Wall clock time and date at job start Tue Mar 31 2020 17:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 H 1.08996 * 109.47627 * 304.13182 * 3 2 1 5 5 C 1.53010 * 109.47164 * 184.13366 * 3 2 1 6 6 C 1.53002 * 109.46730 * 66.91782 * 5 3 2 7 7 F 1.39889 * 109.47395 * 54.19825 * 6 5 3 8 8 F 1.39899 * 109.46624 * 174.20371 * 6 5 3 9 9 F 1.39903 * 109.47020 * 294.19866 * 6 5 3 10 10 C 1.50699 * 109.47273 * 64.13564 * 3 2 1 11 11 O 1.21291 * 119.99845 * 25.72216 * 10 3 2 12 12 N 1.34777 * 120.00290 * 205.71988 * 10 3 2 13 13 C 1.47160 * 120.70676 * 354.76886 * 12 10 3 14 14 C 1.53884 * 108.03000 * 132.73262 * 13 12 10 15 15 H 1.09005 * 112.09935 * 181.90719 * 14 13 12 16 16 C 1.54541 * 107.83201 * 305.86569 * 14 13 12 17 17 C 1.55859 * 104.09429 * 89.27934 * 16 14 13 18 18 C 1.54543 * 104.99979 * 359.97438 * 17 16 14 19 19 H 1.09005 * 112.67982 * 146.69375 * 18 17 16 20 20 C 1.47166 * 120.71133 * 174.73888 * 12 10 3 21 21 N 1.48308 * 107.21229 * 58.35855 * 14 13 12 22 22 C 1.36940 * 128.07737 * 106.70062 * 21 14 13 23 23 H 1.07997 * 120.00134 * 16.14714 * 22 21 14 24 24 C 1.38814 * 119.99859 * 196.15211 * 22 21 14 25 25 N 1.31623 * 120.00062 * 7.28410 * 24 22 21 26 26 Si 1.86801 * 119.99938 * 187.29116 * 24 22 21 27 27 H 1.48501 * 109.47325 * 89.99495 * 26 24 22 28 28 H 1.48498 * 109.47035 * 209.99902 * 26 24 22 29 29 H 1.48505 * 109.46798 * 329.99731 * 26 24 22 30 30 H 1.09000 * 109.47339 * 304.20470 * 1 2 3 31 31 H 1.09001 * 109.47181 * 64.20791 * 1 2 3 32 32 H 1.09003 * 109.46648 * 184.20551 * 1 2 3 33 33 H 1.09001 * 109.47565 * 240.00170 * 2 1 3 34 34 H 1.08998 * 109.47702 * 119.99872 * 2 1 3 35 35 H 1.08997 * 109.46804 * 186.91699 * 5 3 2 36 36 H 1.08995 * 109.46846 * 306.91372 * 5 3 2 37 37 H 1.09004 * 109.75012 * 252.35979 * 13 12 10 38 38 H 1.08998 * 109.75399 * 13.09953 * 13 12 10 39 39 H 1.09003 * 110.36929 * 207.91678 * 16 14 13 40 40 H 1.08999 * 110.36521 * 330.23228 * 16 14 13 41 41 H 1.09005 * 110.28046 * 241.10052 * 17 16 14 42 42 H 1.09002 * 110.39334 * 118.93280 * 17 16 14 43 43 H 1.09006 * 109.74727 * 346.90378 * 20 12 10 44 44 H 1.09000 * 109.74658 * 107.62946 * 20 12 10 45 45 H 0.96998 * 119.99757 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6174 1.9773 -0.8506 5 6 3.5665 1.4438 -0.1040 6 6 3.9846 0.9108 -1.4758 7 9 3.3424 1.6464 -2.4775 8 9 5.3704 1.0349 -1.6217 9 9 3.6233 -0.4366 -1.5825 10 6 1.6230 2.1227 1.2785 11 8 1.4149 1.4644 2.2757 12 7 1.4814 3.4626 1.3138 13 6 1.8394 4.2871 0.1486 14 6 0.6881 5.2756 -0.1071 15 1 0.8706 5.9003 -0.9815 16 6 -0.6174 4.4586 -0.2361 17 6 -1.1528 4.3656 1.2247 18 6 -0.1186 5.1325 2.0794 19 1 -0.5718 5.6447 2.9282 20 6 0.9650 4.1323 2.5182 21 7 0.5157 6.0776 1.1284 22 6 0.8617 7.3854 1.3415 23 1 1.0735 8.0315 0.5025 24 6 0.9402 7.8804 2.6360 25 7 0.8238 7.0633 3.6613 26 14 1.2108 9.7063 2.9229 27 1 -0.1026 10.3946 3.0046 28 1 1.9528 9.9031 4.1940 29 1 1.9973 10.2729 1.7978 30 1 -0.3634 0.5777 0.8499 31 1 -0.3633 0.4471 -0.9253 32 1 -0.3633 -1.0250 0.0754 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9381 2.4611 0.0193 36 1 3.9843 0.8074 0.6760 37 1 2.7578 4.8368 0.3545 38 1 1.9785 3.6499 -0.7247 39 1 -1.3310 4.9817 -0.8726 40 1 -0.4063 3.4671 -0.6367 41 1 -1.2085 3.3240 1.5411 42 1 -2.1326 4.8372 1.3008 43 1 0.5327 3.3938 3.1935 44 1 1.7742 4.6624 3.0204 45 1 0.8784 7.4093 4.5658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493928480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:04 Heat of formation + Delta-G solvation = -161.538746 kcal Electronic energy + Delta-G solvation = -31811.816068 eV Core-core repulsion = 27221.926659 eV Total energy + Delta-G solvation = -4589.889409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.31831 -47.81939 -47.74545 -40.34690 -38.20698 -35.34439 -33.83355 -32.40591 -31.34821 -30.64628 -29.29525 -27.14687 -25.82253 -23.99336 -23.77890 -22.95976 -21.99613 -19.85310 -19.48296 -18.86472 -18.72995 -18.27236 -17.78090 -16.98177 -16.21185 -15.42896 -15.14231 -14.88642 -14.77341 -14.68597 -14.40966 -14.14497 -14.02795 -13.92886 -13.85350 -13.64866 -13.63369 -13.11594 -13.01128 -12.81329 -12.73115 -12.12635 -11.94355 -11.88751 -11.75141 -11.62396 -11.27899 -11.08496 -10.95527 -10.88082 -10.82587 -10.65982 -10.34354 -10.08971 -9.93002 -9.75752 -9.62189 -9.27121 -8.82238 -8.12961 -6.89111 -5.89167 -3.26221 2.51875 2.94107 3.32265 3.37942 3.39920 3.43019 3.69050 3.87348 3.91297 4.36377 4.52109 4.70005 4.77880 4.96443 5.17326 5.22063 5.27726 5.31429 5.44133 5.53284 5.58058 5.66574 5.70786 5.76313 5.81656 5.89985 6.01398 6.14995 6.21333 6.27689 6.33650 6.34769 6.46338 6.57966 6.63752 6.74268 6.81771 6.91369 7.24120 7.45429 7.64758 7.99482 8.09295 8.59703 9.00371 9.62293 10.38555 11.23414 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.003890 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.146288 B = 7195.339417 C = 7810.757869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.113 4.113 4 H 0.104 0.896 5 C -0.159 4.159 6 C 0.456 3.544 7 F -0.180 7.180 8 F -0.184 7.184 9 F -0.178 7.178 10 C 0.516 3.484 11 O -0.549 6.549 12 N -0.588 5.588 13 C 0.088 3.912 14 C 0.133 3.867 15 H 0.078 0.922 16 C -0.124 4.124 17 C -0.135 4.135 18 C 0.167 3.833 19 H 0.121 0.879 20 C 0.112 3.888 21 N -0.583 5.583 22 C -0.228 4.228 23 H 0.077 0.923 24 C -0.001 4.001 25 N -0.913 5.913 26 Si 0.913 3.087 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.878 -12.051 -9.924 15.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.134 4.134 4 H 0.122 0.878 5 C -0.198 4.198 6 C 0.402 3.598 7 F -0.162 7.162 8 F -0.165 7.165 9 F -0.159 7.159 10 C 0.302 3.698 11 O -0.428 6.428 12 N -0.319 5.319 13 C -0.037 4.037 14 C 0.024 3.976 15 H 0.096 0.904 16 C -0.163 4.163 17 C -0.174 4.174 18 C 0.059 3.941 19 H 0.138 0.862 20 C -0.011 4.011 21 N -0.304 5.304 22 C -0.356 4.356 23 H 0.094 0.906 24 C -0.198 4.198 25 N -0.559 5.559 26 Si 0.743 3.257 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.830 -12.152 -9.215 15.511 hybrid contribution 0.371 0.942 -0.093 1.017 sum 3.202 -11.210 -9.309 14.919 Atomic orbital electron populations 1.21748 0.95131 1.01891 1.02014 1.21817 0.97123 0.93458 1.03934 1.21454 0.93310 0.99441 0.99244 0.87784 1.22849 0.98139 1.06033 0.92731 1.20512 0.74703 0.75761 0.88819 1.93187 1.81580 1.76991 1.64439 1.93195 1.31097 1.95703 1.96544 1.93099 1.90871 1.35170 1.96808 1.20009 0.78439 0.82295 0.89045 1.90657 1.52233 1.64178 1.35745 1.48274 1.62192 1.04995 1.16434 1.22651 1.00136 0.93855 0.87041 1.21929 0.92106 0.91330 0.92210 0.90394 1.22753 0.97899 0.98548 0.97121 1.22894 0.99463 0.99321 0.95738 1.21922 0.89825 0.88030 0.94310 0.86196 1.22469 0.99182 0.94571 0.84833 1.45144 1.68776 1.08121 1.08317 1.18998 1.40726 0.83817 0.92068 0.90572 1.24857 1.01333 0.98136 0.95523 1.69816 1.55268 1.32938 0.97886 0.86121 0.77721 0.84538 0.77332 1.21551 1.21690 1.20646 0.91955 0.93061 0.92591 0.89847 0.90442 0.86710 0.86474 0.91421 0.91524 0.92539 0.92918 0.92986 0.92817 0.91373 0.90229 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.75 37.16 0.36 -1.44 16 2 C -0.13 -1.48 4.75 -26.73 -0.13 -1.61 16 3 C -0.11 -1.40 1.27 -91.77 -0.12 -1.52 16 4 H 0.10 1.22 5.66 -51.93 -0.29 0.92 16 5 C -0.16 -1.68 4.68 -26.72 -0.12 -1.81 16 6 C 0.46 4.73 3.13 37.16 0.12 4.84 16 7 F -0.18 -1.97 16.45 2.25 0.04 -1.94 16 8 F -0.18 -2.00 17.32 2.25 0.04 -1.96 16 9 F -0.18 -1.87 14.20 2.25 0.03 -1.84 16 10 C 0.52 8.47 5.94 -10.99 -0.07 8.40 16 11 O -0.55 -10.71 14.82 5.55 0.08 -10.63 16 12 N -0.59 -10.36 2.26 -171.55 -0.39 -10.75 16 13 C 0.09 1.43 5.29 -3.22 -0.02 1.41 16 14 C 0.13 2.41 4.27 -65.66 -0.28 2.13 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C -0.12 -2.04 6.31 -24.40 -0.15 -2.20 16 17 C -0.13 -2.49 6.22 -24.39 -0.15 -2.65 16 18 C 0.17 3.62 3.14 -65.67 -0.21 3.42 16 19 H 0.12 3.01 6.33 -51.93 -0.33 2.68 16 20 C 0.11 2.35 5.78 -3.23 -0.02 2.33 16 21 N -0.58 -13.17 2.81 -152.61 -0.43 -13.60 16 22 C -0.23 -5.76 10.37 -15.06 -0.16 -5.91 16 23 H 0.08 1.88 7.84 -52.49 -0.41 1.47 16 24 C 0.00 -0.03 5.43 -17.43 -0.09 -0.12 16 25 N -0.91 -24.46 10.36 55.49 0.57 -23.89 16 26 Si 0.91 20.76 29.56 -169.99 -5.02 15.74 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.06 0.90 6.74 -51.93 -0.35 0.55 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.87 5.24 -51.93 -0.27 0.60 16 34 H 0.08 0.99 7.71 -51.93 -0.40 0.59 16 35 H 0.11 1.19 7.65 -51.93 -0.40 0.79 16 36 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.87 5.47 -51.93 -0.28 0.58 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.78 7.84 -51.93 -0.41 0.37 16 41 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.07 1.45 7.16 -51.93 -0.37 1.08 16 44 H 0.08 1.92 7.81 -51.93 -0.41 1.51 16 45 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -27.66 354.03 -7.20 -34.86 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.42 Total: 3.39 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.03 Total: 5.28 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.24 Total: -48.24 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.11 Total: -5.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.66 -7.20 -34.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493928480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.678 kcal (2) G-P(sol) polarization free energy of solvation -27.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds