Wall clock time and date at job start Tue Mar 31 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 H 1.08996 * 109.47627 * 304.13182 * 3 2 1 5 5 C 1.53010 * 109.47164 * 184.13366 * 3 2 1 6 6 C 1.53002 * 109.46730 * 66.91782 * 5 3 2 7 7 F 1.39889 * 109.47395 * 54.19825 * 6 5 3 8 8 F 1.39899 * 109.46624 * 174.20371 * 6 5 3 9 9 F 1.39903 * 109.47020 * 294.19866 * 6 5 3 10 10 C 1.50699 * 109.47273 * 64.13564 * 3 2 1 11 11 O 1.21291 * 119.99845 * 25.72216 * 10 3 2 12 12 N 1.34777 * 120.00290 * 205.71988 * 10 3 2 13 13 C 1.47160 * 120.70676 * 354.76886 * 12 10 3 14 14 C 1.53884 * 108.03000 * 132.73262 * 13 12 10 15 15 H 1.09005 * 112.09935 * 181.90719 * 14 13 12 16 16 C 1.54541 * 107.83201 * 305.86569 * 14 13 12 17 17 C 1.55859 * 104.09429 * 89.27934 * 16 14 13 18 18 C 1.54543 * 104.99979 * 359.97438 * 17 16 14 19 19 H 1.09005 * 112.67982 * 146.69375 * 18 17 16 20 20 C 1.47166 * 120.71133 * 174.73888 * 12 10 3 21 21 N 1.48308 * 107.21229 * 58.35855 * 14 13 12 22 22 C 1.36940 * 128.07737 * 106.70062 * 21 14 13 23 23 H 1.07997 * 120.00134 * 16.14714 * 22 21 14 24 24 C 1.38814 * 119.99859 * 196.15211 * 22 21 14 25 25 N 1.31623 * 120.00062 * 7.28410 * 24 22 21 26 26 Si 1.86801 * 119.99938 * 187.29116 * 24 22 21 27 27 H 1.48501 * 109.47325 * 89.99495 * 26 24 22 28 28 H 1.48498 * 109.47035 * 209.99902 * 26 24 22 29 29 H 1.48505 * 109.46798 * 329.99731 * 26 24 22 30 30 H 1.09000 * 109.47339 * 304.20470 * 1 2 3 31 31 H 1.09001 * 109.47181 * 64.20791 * 1 2 3 32 32 H 1.09003 * 109.46648 * 184.20551 * 1 2 3 33 33 H 1.09001 * 109.47565 * 240.00170 * 2 1 3 34 34 H 1.08998 * 109.47702 * 119.99872 * 2 1 3 35 35 H 1.08997 * 109.46804 * 186.91699 * 5 3 2 36 36 H 1.08995 * 109.46846 * 306.91372 * 5 3 2 37 37 H 1.09004 * 109.75012 * 252.35979 * 13 12 10 38 38 H 1.08998 * 109.75399 * 13.09953 * 13 12 10 39 39 H 1.09003 * 110.36929 * 207.91678 * 16 14 13 40 40 H 1.08999 * 110.36521 * 330.23228 * 16 14 13 41 41 H 1.09005 * 110.28046 * 241.10052 * 17 16 14 42 42 H 1.09002 * 110.39334 * 118.93280 * 17 16 14 43 43 H 1.09006 * 109.74727 * 346.90378 * 20 12 10 44 44 H 1.09000 * 109.74658 * 107.62946 * 20 12 10 45 45 H 0.96998 * 119.99757 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6174 1.9773 -0.8506 5 6 3.5665 1.4438 -0.1040 6 6 3.9846 0.9108 -1.4758 7 9 3.3424 1.6464 -2.4775 8 9 5.3704 1.0349 -1.6217 9 9 3.6233 -0.4366 -1.5825 10 6 1.6230 2.1227 1.2785 11 8 1.4149 1.4644 2.2757 12 7 1.4814 3.4626 1.3138 13 6 1.8394 4.2871 0.1486 14 6 0.6881 5.2756 -0.1071 15 1 0.8706 5.9003 -0.9815 16 6 -0.6174 4.4586 -0.2361 17 6 -1.1528 4.3656 1.2247 18 6 -0.1186 5.1325 2.0794 19 1 -0.5718 5.6447 2.9282 20 6 0.9650 4.1323 2.5182 21 7 0.5157 6.0776 1.1284 22 6 0.8617 7.3854 1.3415 23 1 1.0735 8.0315 0.5025 24 6 0.9402 7.8804 2.6360 25 7 0.8238 7.0633 3.6613 26 14 1.2108 9.7063 2.9229 27 1 -0.1026 10.3946 3.0046 28 1 1.9528 9.9031 4.1940 29 1 1.9973 10.2729 1.7978 30 1 -0.3634 0.5777 0.8499 31 1 -0.3633 0.4471 -0.9253 32 1 -0.3633 -1.0250 0.0754 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.9381 2.4611 0.0193 36 1 3.9843 0.8074 0.6760 37 1 2.7578 4.8368 0.3545 38 1 1.9785 3.6499 -0.7247 39 1 -1.3310 4.9817 -0.8726 40 1 -0.4063 3.4671 -0.6367 41 1 -1.2085 3.3240 1.5411 42 1 -2.1326 4.8372 1.3008 43 1 0.5327 3.3938 3.1935 44 1 1.7742 4.6624 3.0204 45 1 0.8784 7.4093 4.5658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493928480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:03 Heat of formation + Delta-G solvation = -175.119384 kcal Electronic energy + Delta-G solvation = -31812.404969 eV Core-core repulsion = 27221.926659 eV Total energy + Delta-G solvation = -4590.478310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.13542 -48.63536 -48.56260 -41.75751 -39.65321 -36.46509 -35.42694 -34.12495 -32.39773 -32.06888 -31.01527 -28.41293 -27.15735 -25.49375 -25.42365 -23.82023 -23.18508 -21.29128 -21.02356 -20.03445 -19.66172 -19.44862 -18.76631 -18.25644 -17.74398 -16.82057 -16.62400 -16.43827 -15.80817 -15.67001 -15.53485 -15.29981 -15.09990 -14.94629 -14.80025 -14.72595 -14.66571 -14.63096 -14.44280 -14.19643 -13.85902 -13.54262 -13.24643 -13.17861 -13.03929 -12.91158 -12.81032 -12.69577 -12.59073 -12.15737 -11.95231 -11.88257 -11.78503 -11.67361 -11.49114 -11.44103 -11.13412 -10.81434 -10.54913 -9.71523 -8.68045 -7.83759 -5.20280 1.48934 1.50576 1.51600 1.58339 1.79675 2.12330 2.51773 2.79927 3.00155 3.06288 3.36312 3.46966 3.54573 3.68626 3.79525 4.03545 4.10098 4.15361 4.26208 4.32205 4.34518 4.40552 4.44902 4.52127 4.63853 4.71281 4.79539 4.86957 4.88588 5.01047 5.05919 5.11659 5.12924 5.16629 5.28399 5.31190 5.40607 5.43267 5.55898 5.59448 5.85549 6.25156 6.61388 7.07717 7.22924 7.74753 8.53376 9.27452 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.003890 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.146288 B = 7195.339417 C = 7810.757869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.104 4.104 4 H 0.121 0.879 5 C -0.158 4.158 6 C 0.465 3.535 7 F -0.180 7.180 8 F -0.186 7.186 9 F -0.177 7.177 10 C 0.518 3.482 11 O -0.582 6.582 12 N -0.591 5.591 13 C 0.094 3.906 14 C 0.125 3.875 15 H 0.094 0.906 16 C -0.112 4.112 17 C -0.127 4.127 18 C 0.164 3.836 19 H 0.078 0.922 20 C 0.130 3.870 21 N -0.603 5.603 22 C -0.229 4.229 23 H 0.082 0.918 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.969 3.031 27 H -0.292 1.292 28 H -0.302 1.302 29 H -0.269 1.269 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.039 0.961 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.236 -13.118 -13.066 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.125 4.125 4 H 0.139 0.861 5 C -0.197 4.197 6 C 0.411 3.589 7 F -0.162 7.162 8 F -0.167 7.167 9 F -0.159 7.159 10 C 0.307 3.693 11 O -0.462 6.462 12 N -0.321 5.321 13 C -0.030 4.030 14 C 0.018 3.982 15 H 0.112 0.888 16 C -0.151 4.151 17 C -0.166 4.166 18 C 0.056 3.944 19 H 0.096 0.904 20 C 0.006 3.994 21 N -0.324 5.324 22 C -0.358 4.358 23 H 0.100 0.900 24 C -0.249 4.249 25 N -0.587 5.587 26 Si 0.799 3.201 27 H -0.219 1.219 28 H -0.229 1.229 29 H -0.194 1.194 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.073 0.927 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.196 -13.238 -12.416 18.428 hybrid contribution 0.255 1.215 0.878 1.521 sum 3.451 -12.022 -11.537 17.016 Atomic orbital electron populations 1.21749 0.95194 1.02333 1.01480 1.21837 0.97047 0.92866 1.04277 1.21429 0.94658 0.99512 0.96867 0.86075 1.22833 0.96701 1.06729 0.93388 1.20289 0.74552 0.75685 0.88336 1.93191 1.81546 1.76995 1.64432 1.93199 1.31295 1.95715 1.96509 1.93100 1.90827 1.35147 1.96776 1.20690 0.77083 0.81453 0.90100 1.90649 1.53324 1.64730 1.37547 1.48245 1.62448 1.05708 1.15742 1.22652 0.98672 0.93973 0.87679 1.22228 0.93628 0.91568 0.90782 0.88826 1.22704 0.96981 0.99870 0.95513 1.22760 0.98322 0.98709 0.96809 1.21728 0.90747 0.88175 0.93728 0.90378 1.21912 0.97597 0.93903 0.86003 1.45310 1.69184 1.07914 1.10039 1.19313 1.39066 0.85329 0.92074 0.90034 1.25522 1.02442 1.01265 0.95667 1.70017 1.57024 1.34006 0.97618 0.85222 0.77190 0.80900 0.76814 1.21896 1.22860 1.19408 0.94849 0.91442 0.91472 0.87836 0.91693 0.86177 0.85877 0.92662 0.87205 0.91224 0.90215 0.92714 0.92963 0.92662 0.94271 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.75 71.98 0.70 -2.49 16 2 C -0.12 -2.53 4.75 30.59 0.15 -2.39 16 3 C -0.10 -2.24 1.27 -11.54 -0.01 -2.26 16 4 H 0.12 2.24 5.66 -2.39 -0.01 2.22 16 5 C -0.16 -2.87 4.68 30.60 0.14 -2.72 16 6 C 0.47 8.00 3.13 71.98 0.23 8.23 16 7 F -0.18 -3.17 16.45 44.97 0.74 -2.43 16 8 F -0.19 -3.49 17.32 44.97 0.78 -2.71 16 9 F -0.18 -3.08 14.20 44.97 0.64 -2.45 16 10 C 0.52 16.29 5.94 87.66 0.52 16.82 16 11 O -0.58 -22.64 14.82 -3.06 -0.05 -22.68 16 12 N -0.59 -20.30 2.26 -815.04 -1.84 -22.14 16 13 C 0.09 2.82 5.29 86.55 0.46 3.28 16 14 C 0.13 4.23 4.27 45.47 0.19 4.43 16 15 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 16 C -0.11 -3.33 6.31 32.11 0.20 -3.13 16 17 C -0.13 -4.59 6.22 32.11 0.20 -4.39 16 18 C 0.16 7.33 3.14 45.45 0.14 7.47 16 19 H 0.08 4.15 6.33 -2.38 -0.02 4.14 16 20 C 0.13 5.67 5.78 86.54 0.50 6.17 16 21 N -0.60 -27.23 2.81 -636.73 -1.79 -29.02 16 22 C -0.23 -11.60 10.37 84.03 0.87 -10.73 16 23 H 0.08 3.96 7.84 -2.91 -0.02 3.93 16 24 C -0.05 -2.90 5.43 84.86 0.46 -2.43 16 25 N -0.94 -52.75 10.36 21.65 0.22 -52.52 16 26 Si 0.97 43.55 29.56 68.60 2.03 45.58 16 27 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 28 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 29 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 30 H 0.03 0.90 6.74 -2.39 -0.02 0.88 16 31 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.77 5.24 -2.39 -0.01 1.75 16 34 H 0.06 1.53 7.71 -2.39 -0.02 1.51 16 35 H 0.12 2.11 7.65 -2.39 -0.02 2.09 16 36 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.11 2.35 5.47 -2.39 -0.01 2.33 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 1.97 7.84 -2.39 -0.02 1.95 16 41 H 0.05 1.94 7.84 -2.38 -0.02 1.92 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.05 2.49 7.16 -2.38 -0.02 2.47 16 44 H 0.04 2.00 7.81 -2.39 -0.02 1.98 16 45 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 Total: -1.00 -62.28 354.03 6.50 -55.78 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 1.01 Total: 16.75 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: 4.75 Total: 15.85 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -3.40 Total: -103.68 kcal Atomic # 8 Polarization: -22.64 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 2.16 Total: -7.59 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -62.28 6.50 -55.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493928480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.335 kcal (2) G-P(sol) polarization free energy of solvation -62.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds