Wall clock time and date at job start Tue Mar 31 2020 18:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.53011 * 109.46807 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.70521 * 54.99964 * 10 9 7 12 12 C 1.53469 * 109.70315 * 175.58072 * 10 9 7 13 13 O 1.43175 * 108.23574 * 179.38443 * 12 10 9 14 14 C 1.36113 * 116.72324 * 313.82469 * 13 12 10 15 15 C 1.38701 * 119.38576 * 197.14987 * 14 13 12 16 16 C 1.38195 * 120.06164 * 180.18242 * 15 14 13 17 17 C 1.38251 * 120.11664 * 359.97438 * 16 15 14 18 18 C 1.38197 * 120.11205 * 359.94476 * 17 16 15 19 19 C 1.38704 * 120.06695 * 0.02562 * 18 17 16 20 20 O 1.36106 * 119.40019 * 180.15713 * 19 18 17 21 21 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 3 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 3 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 3 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48496 * 109.47141 * 59.99751 * 26 24 22 28 28 H 1.48490 * 109.47071 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46993 * 300.00028 * 26 24 22 30 30 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 31 31 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 32 32 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 34 34 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 35 35 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 38 38 H 1.09000 * 109.47726 * 299.99386 * 9 7 6 39 39 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 40 40 H 1.09001 * 109.71390 * 299.12161 * 12 10 9 41 41 H 1.08999 * 109.71464 * 59.76030 * 12 10 9 42 42 H 1.07998 * 119.96863 * 0.15505 * 15 14 13 43 43 H 1.08008 * 119.94331 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.94809 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.96682 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99792 * 264.99726 * 21 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 6 7.4232 4.4765 0.0879 11 1 7.8532 3.7946 -0.6456 12 6 7.9600 5.8949 -0.1471 13 8 9.3847 5.8635 -0.0081 14 6 9.8799 5.1968 1.0703 15 6 11.1904 5.4203 1.4657 16 6 11.7087 4.7481 2.5562 17 6 10.9227 3.8519 3.2564 18 6 9.6156 3.6258 2.8687 19 6 9.0890 4.2976 1.7754 20 8 7.7991 4.0670 1.4074 21 7 1.6524 2.0975 -1.2518 22 6 0.4157 2.6734 -1.3688 23 1 -0.2740 2.6452 -0.5381 24 6 0.0506 3.2991 -2.5530 25 7 0.8912 3.3339 -3.5651 26 14 -1.6337 4.0915 -2.7099 27 1 -1.7782 5.1545 -1.6831 28 1 -1.7766 4.6867 -4.0628 29 1 -2.6855 3.0627 -2.5086 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 3.8500 1.0377 1.0960 36 1 3.9955 0.8311 -0.6660 37 1 3.4411 3.5483 -0.1315 38 1 5.6130 4.8812 -1.0082 39 1 5.4680 5.0881 0.7537 40 1 7.6951 6.2268 -1.1510 41 1 7.5346 6.5759 0.5901 42 1 11.8066 6.1199 0.9204 43 1 12.7296 4.9233 2.8622 44 1 11.3306 3.3278 4.1080 45 1 9.0036 2.9255 3.4176 46 1 2.2720 2.1232 -1.9978 47 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494991161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:56 Heat of formation + Delta-G solvation = -80.939396 kcal Electronic energy + Delta-G solvation = -28504.360797 eV Core-core repulsion = 24459.823178 eV Total energy + Delta-G solvation = -4044.537619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.43815 -39.42799 -37.85559 -37.34263 -36.66983 -33.70010 -33.06861 -32.38634 -30.81749 -29.87113 -29.42697 -28.23707 -26.91876 -24.28774 -23.51814 -22.89016 -22.36511 -20.80212 -20.25047 -19.80367 -18.88894 -17.76933 -17.40173 -17.00192 -16.57320 -15.74205 -15.48340 -15.24825 -15.21928 -14.87645 -14.67466 -14.43157 -14.09126 -13.98856 -13.88408 -13.48623 -13.23255 -13.06147 -12.95217 -12.72499 -12.33681 -12.10005 -11.96733 -11.85583 -11.45598 -11.35863 -11.07277 -10.99637 -10.91845 -10.77051 -10.56316 -10.46969 -10.23902 -10.07205 -9.60624 -9.55153 -8.99835 -8.80425 -8.64111 -8.19463 -7.08590 -5.86606 -3.15707 1.13096 1.16390 2.83883 2.91784 3.06236 3.35832 3.41280 3.42517 3.42956 3.57446 4.08521 4.45857 4.47595 4.50064 4.64288 4.80713 4.92696 5.05200 5.10502 5.17471 5.21410 5.29770 5.37767 5.40455 5.43814 5.53502 5.55981 5.72310 5.89356 5.93647 5.94967 5.97366 6.04509 6.14342 6.29011 6.40160 6.46831 6.52210 6.55156 6.58427 6.79759 6.87960 6.99797 7.21396 7.31577 7.61321 7.90210 8.30899 8.54711 9.42851 9.97740 10.33921 11.35189 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002348 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.213972 B =11920.238291 C =13105.275540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.053 0.947 5 C 0.116 3.884 6 N -0.712 5.712 7 C 0.512 3.488 8 O -0.543 6.543 9 C -0.136 4.136 10 C 0.071 3.929 11 H 0.094 0.906 12 C 0.025 3.975 13 O -0.307 6.307 14 C 0.044 3.956 15 C -0.115 4.115 16 C -0.123 4.123 17 C -0.117 4.117 18 C -0.115 4.115 19 C 0.062 3.938 20 O -0.289 6.289 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.072 0.928 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.903 3.097 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.040 0.960 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.410 0.590 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.385 0.615 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.832 4.266 10.937 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.053 3.947 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.364 5.364 7 C 0.297 3.703 8 O -0.421 6.421 9 C -0.176 4.176 10 C 0.014 3.986 11 H 0.112 0.888 12 C -0.050 4.050 13 O -0.221 6.221 14 C -0.001 4.001 15 C -0.134 4.134 16 C -0.142 4.142 17 C -0.135 4.135 18 C -0.134 4.134 19 C 0.016 3.984 20 O -0.203 6.203 21 N -0.363 5.363 22 C -0.368 4.368 23 H 0.090 0.910 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.734 3.266 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.247 0.753 38 H 0.139 0.861 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.097 0.903 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.219 0.781 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 17.136 3.700 11.019 20.707 hybrid contribution -1.346 0.756 -0.658 1.678 sum 15.791 4.457 10.360 19.405 Atomic orbital electron populations 1.21770 0.95721 0.99654 1.03231 1.22068 0.96964 0.98421 1.00032 1.20567 0.89975 0.92795 0.91388 0.92864 1.21654 0.95534 0.82640 1.01038 1.45946 1.06965 1.10862 1.72613 1.20191 0.82710 0.90451 0.76939 1.90706 1.55981 1.46197 1.49181 1.21684 0.92837 0.97132 1.05984 1.22835 0.95652 0.95563 0.84556 0.88822 1.23723 0.79358 0.96833 1.05131 1.86299 1.22484 1.71133 1.42200 1.18968 0.94750 0.95247 0.91141 1.20417 0.92948 1.02009 0.98021 1.20875 1.00114 0.97620 0.95545 1.20910 0.93078 0.99070 1.00441 1.20502 0.95653 1.00229 0.96987 1.19017 0.85339 0.96486 0.97533 1.86422 1.23382 1.78832 1.31678 1.42447 1.16737 1.65877 1.11285 1.19161 0.92020 1.27579 0.98068 0.90971 1.24730 0.98062 1.01560 0.96408 1.69647 1.35290 1.48835 1.04062 0.86334 0.84243 0.79256 0.76734 1.21312 1.21793 1.21275 0.94126 0.89668 0.94871 0.92537 0.93850 0.91940 0.91910 0.75343 0.86115 0.87606 0.85657 0.90305 0.85016 0.85276 0.85231 0.84806 0.78116 0.93440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.28 5.61 -26.73 -0.15 -2.43 16 3 C 0.16 2.93 2.59 -67.93 -0.18 2.76 16 4 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 5 C 0.12 1.93 5.23 -4.04 -0.02 1.91 16 6 N -0.71 -11.21 5.39 -60.29 -0.32 -11.54 16 7 C 0.51 8.00 7.72 -10.99 -0.08 7.92 16 8 O -0.54 -10.39 15.46 -7.97 -0.12 -10.52 16 9 C -0.14 -1.55 5.43 -27.88 -0.15 -1.70 16 10 C 0.07 0.87 2.55 -26.48 -0.07 0.80 16 11 H 0.09 1.28 7.96 -51.93 -0.41 0.87 16 12 C 0.03 0.25 6.56 37.40 0.25 0.49 16 13 O -0.31 -3.75 10.42 -32.88 -0.34 -4.09 16 14 C 0.04 0.55 6.49 -39.14 -0.25 0.30 16 15 C -0.12 -1.20 9.96 -39.43 -0.39 -1.60 16 16 C -0.12 -1.10 10.04 -39.59 -0.40 -1.50 16 17 C -0.12 -1.10 10.04 -39.59 -0.40 -1.49 16 18 C -0.12 -1.36 9.96 -39.42 -0.39 -1.75 16 19 C 0.06 0.84 6.49 -39.14 -0.25 0.58 16 20 O -0.29 -4.21 9.36 -44.07 -0.41 -4.63 16 21 N -0.72 -15.90 4.51 -53.42 -0.24 -16.14 16 22 C -0.24 -5.85 7.75 -15.06 -0.12 -5.97 16 23 H 0.07 1.75 7.32 -52.49 -0.38 1.36 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -26.08 13.06 55.49 0.72 -25.35 16 26 Si 0.90 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.41 6.39 8.14 -40.82 -0.33 6.06 16 38 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.38 9.30 7.80 -40.82 -0.32 8.99 16 47 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 387.43 15.07 5.84 5.84 Total: -1.00 -31.16 387.43 -9.50 -40.66 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -7.23 Total: 14.06 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.37 Total: -4.30 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.16 Total: -53.04 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.88 Total: -19.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.16 -9.50 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494991161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.279 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds