Wall clock time and date at job start Tue Mar 31 2020 18:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09000 * 109.47521 * 55.00146 * 3 2 1 5 5 C 1.53003 * 109.47332 * 175.00312 * 3 2 1 6 6 N 1.46501 * 109.47349 * 175.00381 * 5 3 2 7 7 C 1.34775 * 119.99874 * 180.02562 * 6 5 3 8 8 O 1.21278 * 120.00286 * 359.97438 * 7 6 5 9 9 C 1.50699 * 119.99538 * 179.97438 * 7 6 5 10 10 C 1.53011 * 109.46807 * 179.97438 * 9 7 6 11 11 H 1.08992 * 109.70521 * 54.99964 * 10 9 7 12 12 C 1.53469 * 109.70315 * 175.58072 * 10 9 7 13 13 O 1.43175 * 108.23574 * 179.38443 * 12 10 9 14 14 C 1.36113 * 116.72324 * 313.82469 * 13 12 10 15 15 C 1.38701 * 119.38576 * 197.14987 * 14 13 12 16 16 C 1.38195 * 120.06164 * 180.18242 * 15 14 13 17 17 C 1.38251 * 120.11664 * 359.97438 * 16 15 14 18 18 C 1.38197 * 120.11205 * 359.94476 * 17 16 15 19 19 C 1.38704 * 120.06695 * 0.02562 * 18 17 16 20 20 O 1.36106 * 119.40019 * 180.15713 * 19 18 17 21 21 N 1.46505 * 109.47130 * 295.00060 * 3 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 3 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 3 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 3 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48496 * 109.47141 * 59.99751 * 26 24 22 28 28 H 1.48490 * 109.47071 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.46993 * 300.00028 * 26 24 22 30 30 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 31 31 H 1.08995 * 109.46828 * 59.99774 * 1 2 3 32 32 H 1.08994 * 109.46841 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 34 34 H 1.09000 * 109.47681 * 120.00001 * 2 1 3 35 35 H 1.09009 * 109.46837 * 294.99855 * 5 3 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 5 3 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 6 5 3 38 38 H 1.09000 * 109.47726 * 299.99386 * 9 7 6 39 39 H 1.08998 * 109.47231 * 60.00064 * 9 7 6 40 40 H 1.09001 * 109.71390 * 299.12161 * 12 10 9 41 41 H 1.08999 * 109.71464 * 59.76030 * 12 10 9 42 42 H 1.07998 * 119.96863 * 0.15505 * 15 14 13 43 43 H 1.08008 * 119.94331 * 179.97438 * 16 15 14 44 44 H 1.07996 * 119.94809 * 179.97438 * 17 16 15 45 45 H 1.08000 * 119.96682 * 180.02562 * 18 17 16 46 46 H 0.97000 * 119.99792 * 264.99726 * 21 3 2 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5649 1.4443 0.1256 6 7 4.0631 2.8168 0.0060 7 6 5.3858 3.0629 0.0858 8 8 6.1636 2.1483 0.2571 9 6 5.8983 4.4747 -0.0379 10 6 7.4232 4.4765 0.0879 11 1 7.8532 3.7946 -0.6456 12 6 7.9600 5.8949 -0.1471 13 8 9.3847 5.8635 -0.0081 14 6 9.8799 5.1968 1.0703 15 6 11.1904 5.4203 1.4657 16 6 11.7087 4.7481 2.5562 17 6 10.9227 3.8519 3.2564 18 6 9.6156 3.6258 2.8687 19 6 9.0890 4.2976 1.7754 20 8 7.7991 4.0670 1.4074 21 7 1.6524 2.0975 -1.2518 22 6 0.4157 2.6734 -1.3688 23 1 -0.2740 2.6452 -0.5381 24 6 0.0506 3.2991 -2.5530 25 7 0.8912 3.3339 -3.5651 26 14 -1.6337 4.0915 -2.7099 27 1 -1.7782 5.1545 -1.6831 28 1 -1.7766 4.6867 -4.0628 29 1 -2.6855 3.0627 -2.5086 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8935 -0.5138 0.8899 35 1 3.8500 1.0377 1.0960 36 1 3.9955 0.8311 -0.6660 37 1 3.4411 3.5483 -0.1315 38 1 5.6130 4.8812 -1.0082 39 1 5.4680 5.0881 0.7537 40 1 7.6951 6.2268 -1.1510 41 1 7.5346 6.5759 0.5901 42 1 11.8066 6.1199 0.9204 43 1 12.7296 4.9233 2.8622 44 1 11.3306 3.3278 4.1080 45 1 9.0036 2.9255 3.4176 46 1 2.2720 2.1232 -1.9978 47 1 0.6359 3.7708 -4.3927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494991161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:55 Heat of formation + Delta-G solvation = -100.452847 kcal Electronic energy + Delta-G solvation = -28505.206963 eV Core-core repulsion = 24459.823178 eV Total energy + Delta-G solvation = -4045.383785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.31417 -40.68344 -38.73078 -38.34006 -38.07533 -35.20553 -34.21492 -33.89939 -31.61865 -31.50798 -30.44690 -29.50521 -27.98332 -25.66936 -24.89702 -23.88512 -23.55925 -21.73648 -21.59809 -21.11153 -19.83476 -19.22577 -18.58642 -18.01424 -17.69924 -17.04627 -16.86176 -16.31728 -16.13347 -16.05345 -15.83842 -15.56096 -15.37424 -15.10470 -14.84211 -14.77158 -14.63088 -14.44590 -14.18145 -13.84876 -13.76427 -13.07714 -12.95336 -12.81535 -12.74364 -12.74070 -12.69390 -12.37139 -12.14046 -12.12993 -11.96226 -11.87893 -11.62989 -11.44282 -11.33091 -10.96167 -10.78706 -9.99172 -9.62566 -9.05416 -8.96453 -7.86323 -5.13178 0.31587 0.34585 1.51872 1.53253 1.58224 1.67756 2.02274 2.17525 2.30645 2.60960 2.76375 3.19876 3.47245 3.53884 3.60835 3.78322 3.89490 3.96991 4.02718 4.14400 4.26068 4.27503 4.38278 4.38881 4.44063 4.48004 4.50420 4.56066 4.62940 4.68642 4.76687 4.88148 4.91992 5.09639 5.13577 5.20823 5.21852 5.24042 5.49162 5.52284 5.58682 5.62808 5.71612 5.74310 5.94873 6.33804 6.43625 6.62763 7.29055 7.42112 8.13208 8.39013 9.36238 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018511 B = 0.002348 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.213972 B =11920.238291 C =13105.275540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.166 3.834 4 H 0.059 0.941 5 C 0.124 3.876 6 N -0.711 5.711 7 C 0.507 3.493 8 O -0.582 6.582 9 C -0.127 4.127 10 C 0.069 3.931 11 H 0.069 0.931 12 C 0.028 3.972 13 O -0.319 6.319 14 C 0.024 3.976 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.030 3.970 20 O -0.314 6.314 21 N -0.726 5.726 22 C -0.216 4.216 23 H 0.079 0.921 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.958 3.042 27 H -0.278 1.278 28 H -0.304 1.304 29 H -0.285 1.285 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.413 0.587 38 H 0.147 0.853 39 H 0.128 0.872 40 H 0.153 0.847 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.130 0.870 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.558 5.026 12.674 22.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.172 4.172 3 C 0.057 3.943 4 H 0.077 0.923 5 C -0.001 4.001 6 N -0.362 5.362 7 C 0.295 3.705 8 O -0.463 6.463 9 C -0.166 4.166 10 C 0.012 3.988 11 H 0.087 0.913 12 C -0.047 4.047 13 O -0.234 6.234 14 C -0.021 4.021 15 C -0.141 4.141 16 C -0.133 4.133 17 C -0.130 4.130 18 C -0.153 4.153 19 C -0.015 4.015 20 O -0.229 6.229 21 N -0.367 5.367 22 C -0.348 4.348 23 H 0.097 0.903 24 C -0.264 4.264 25 N -0.618 5.618 26 Si 0.789 3.211 27 H -0.204 1.204 28 H -0.231 1.231 29 H -0.212 1.212 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.249 0.751 38 H 0.165 0.835 39 H 0.146 0.854 40 H 0.171 0.829 41 H 0.110 0.890 42 H 0.167 0.833 43 H 0.182 0.818 44 H 0.177 0.823 45 H 0.148 0.852 46 H 0.205 0.795 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.849 4.456 12.807 22.416 hybrid contribution -1.492 0.417 -1.079 1.888 sum 16.356 4.873 11.729 20.708 Atomic orbital electron populations 1.21696 0.95887 1.00576 1.01842 1.22001 0.96701 0.97540 1.00909 1.20686 0.90830 0.93155 0.89593 0.92297 1.21502 0.94372 0.83217 1.01002 1.45949 1.07269 1.10489 1.72495 1.20909 0.82117 0.91870 0.75623 1.90687 1.56779 1.47892 1.50925 1.21726 0.92248 0.94437 1.08188 1.22854 0.95969 0.96574 0.83430 0.91307 1.23896 0.78369 0.95289 1.07131 1.86262 1.23625 1.71151 1.42357 1.19264 0.95644 0.95699 0.91467 1.20800 0.92311 1.02376 0.98588 1.21326 1.01476 0.96147 0.94317 1.21296 0.91976 0.98790 1.00982 1.20746 0.96956 1.00565 0.97010 1.19361 0.85415 0.97968 0.98794 1.86368 1.24293 1.79669 1.32552 1.42546 1.15772 1.66065 1.12269 1.19441 0.92546 1.25236 0.97569 0.90324 1.25346 1.00860 1.03471 0.96687 1.69790 1.36819 1.50825 1.04355 0.85436 0.81112 0.78518 0.76025 1.20404 1.23081 1.21176 0.93134 0.93204 0.92950 0.93704 0.90897 0.90866 0.93429 0.75072 0.83524 0.85395 0.82899 0.89044 0.83307 0.81754 0.82286 0.85164 0.79502 0.94415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 9.18 71.98 0.66 -4.11 16 2 C -0.13 -4.25 5.61 30.59 0.17 -4.08 16 3 C 0.17 5.80 2.59 44.99 0.12 5.92 16 4 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 5 C 0.12 4.06 5.23 86.38 0.45 4.52 16 6 N -0.71 -22.11 5.39 -463.05 -2.49 -24.60 16 7 C 0.51 15.89 7.72 87.66 0.68 16.56 16 8 O -0.58 -22.89 15.46 9.91 0.15 -22.74 16 9 C -0.13 -2.77 5.43 29.85 0.16 -2.61 16 10 C 0.07 1.70 2.55 30.76 0.08 1.78 16 11 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 12 C 0.03 0.53 6.56 72.14 0.47 1.00 16 13 O -0.32 -7.68 10.42 -82.61 -0.86 -8.54 16 14 C 0.02 0.60 6.49 22.56 0.15 0.75 16 15 C -0.12 -2.37 9.96 22.37 0.22 -2.15 16 16 C -0.11 -1.76 10.04 22.26 0.22 -1.53 16 17 C -0.11 -1.91 10.04 22.26 0.22 -1.69 16 18 C -0.13 -3.18 9.96 22.37 0.22 -2.95 16 19 C 0.03 0.82 6.49 22.56 0.15 0.97 16 20 O -0.31 -9.44 9.36 -71.82 -0.67 -10.11 16 21 N -0.73 -31.85 4.51 -322.93 -1.46 -33.31 16 22 C -0.22 -10.54 7.75 84.04 0.65 -9.89 16 23 H 0.08 3.70 7.32 -2.91 -0.02 3.68 16 24 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 25 N -0.97 -55.05 13.06 21.65 0.28 -54.77 16 26 Si 0.96 43.35 29.55 68.60 2.03 45.37 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 2.02 5.99 -2.39 -0.01 2.01 16 32 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.41 12.54 8.14 -92.71 -0.75 11.79 16 38 H 0.15 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.15 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 45 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 46 H 0.37 18.24 7.80 -92.71 -0.72 17.52 16 47 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -69.12 387.43 1.59 -67.53 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.49 Total: 41.96 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.10 Total: -0.81 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -3.67 Total: -112.68 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.38 Total: -41.39 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Total: -69.12 1.59 -67.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494991161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.918 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds