Wall clock time and date at job start Tue Mar 31 2020 18:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47286 * 2 1 4 4 N 1.46501 * 109.47499 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00590 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99522 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00506 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47169 * 120.00296 * 9 7 5 12 12 H 1.48503 * 109.46703 * 239.99947 * 9 7 5 13 13 N 1.46506 * 109.47247 * 120.00370 * 2 1 3 14 14 C 1.34777 * 119.99707 * 293.88792 * 13 2 1 15 15 O 1.21275 * 119.99975 * 3.13926 * 14 13 2 16 16 C 1.50695 * 119.99817 * 183.13822 * 14 13 2 17 17 C 1.52997 * 109.47129 * 174.71985 * 16 14 13 18 18 C 1.52997 * 115.55206 * 279.85833 * 17 16 14 19 19 F 1.39901 * 109.47236 * 67.92198 * 18 17 16 20 20 F 1.39898 * 109.47564 * 187.92269 * 18 17 16 21 21 F 1.39899 * 109.47345 * 307.92399 * 18 17 16 22 22 C 1.53002 * 117.49855 * 134.15238 * 17 16 14 23 23 C 1.52997 * 60.00039 * 252.51097 * 22 17 16 24 24 C 1.53011 * 109.47094 * 240.00071 * 2 1 3 25 25 C 1.52999 * 117.51812 * 219.33276 * 24 2 1 26 26 C 1.52999 * 117.49790 * 287.96369 * 24 2 1 27 27 H 1.09004 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47095 * 299.99836 * 1 2 3 29 29 H 1.08998 * 109.47169 * 59.99682 * 1 2 3 30 30 H 1.08998 * 109.47276 * 300.00252 * 3 2 1 31 31 H 1.09001 * 109.46920 * 60.00057 * 3 2 1 32 32 H 0.97001 * 119.99409 * 359.97438 * 4 3 2 33 33 H 0.97001 * 120.00037 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99686 * 113.89092 * 13 2 1 35 35 H 1.08997 * 109.47516 * 294.72336 * 16 14 13 36 36 H 1.09003 * 109.46965 * 54.72255 * 16 14 13 37 37 H 1.08997 * 117.49915 * 0.02562 * 22 17 16 38 38 H 1.08997 * 117.49950 * 145.01947 * 22 17 16 39 39 H 1.09003 * 117.50387 * 252.51412 * 23 22 17 40 40 H 1.09001 * 117.50057 * 107.48472 * 23 22 17 41 41 H 1.08996 * 115.54357 * 73.63108 * 24 2 1 42 42 H 1.09001 * 117.49456 * 214.97586 * 25 24 2 43 43 H 1.08995 * 117.49668 * 359.97438 * 25 24 2 44 44 H 1.08996 * 117.50005 * 359.96824 * 26 24 2 45 45 H 1.08995 * 117.49682 * 144.99836 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0002 6 1 3.6497 3.5636 0.0002 7 6 5.5778 2.6284 -0.0002 8 7 6.2359 1.4885 -0.0012 9 14 6.5118 4.2461 0.0010 10 1 5.5468 5.3747 0.0014 11 1 7.3657 4.3238 1.2136 12 1 7.3655 4.3257 -1.2115 13 7 2.0183 -0.6907 1.1962 14 6 1.7973 -0.1629 2.4164 15 8 1.1453 0.8535 2.5285 16 6 2.3603 -0.8359 3.6416 17 6 2.0798 0.0284 4.8725 18 6 3.0306 1.2088 5.0806 19 9 2.8316 2.1522 4.0669 20 9 2.7766 1.7990 6.3232 21 9 4.3533 0.7548 5.0417 22 6 1.5408 -0.6735 6.1206 23 6 0.6187 0.2169 5.2853 24 6 2.0400 -0.7213 -1.2493 25 6 3.2651 -1.6244 -1.0935 26 6 1.8808 -2.2421 -1.3015 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9899 0.6024 -0.0006 33 1 7.2059 1.4884 -0.0009 34 1 2.5007 -1.5278 1.1098 35 1 1.8912 -1.8116 3.7682 36 1 3.4365 -0.9627 3.5243 37 1 1.3863 -1.7511 6.0649 38 1 1.8636 -0.2944 7.0902 39 1 0.3348 1.1819 5.7053 40 1 -0.1428 -0.2748 4.6798 41 1 1.9353 -0.1719 -2.1849 42 1 3.9665 -1.6691 -1.9267 43 1 3.7082 -1.7045 -0.1010 44 1 1.4133 -2.7288 -0.4456 45 1 1.6716 -2.6932 -2.2714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495258933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:44 Heat of formation + Delta-G solvation = -117.208375 kcal Electronic energy + Delta-G solvation = -31793.437753 eV Core-core repulsion = 27205.470653 eV Total energy + Delta-G solvation = -4587.967100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.69890 -47.31926 -47.01622 -40.24292 -38.40705 -36.88069 -34.38003 -33.27398 -31.66201 -30.09549 -28.98854 -26.35613 -25.60024 -23.27108 -22.73419 -22.16214 -21.90530 -21.33636 -20.03753 -18.80266 -18.07740 -17.86587 -17.54092 -16.95030 -16.91783 -15.48991 -15.00870 -14.85615 -14.76865 -14.40493 -14.07141 -13.97335 -13.77593 -13.64802 -13.50411 -13.44837 -13.26181 -13.23940 -13.15726 -12.57287 -12.41684 -12.28262 -12.07929 -11.76368 -11.59064 -11.50622 -11.31165 -11.23928 -10.84374 -10.75896 -10.68407 -10.65499 -10.47751 -10.03967 -9.86496 -9.80341 -9.54285 -9.22871 -8.67379 -8.48063 -6.71245 -5.63935 -2.88312 2.96127 3.01552 3.18039 3.51185 3.57589 3.59428 3.62632 4.00479 4.08595 4.12912 4.40693 4.47077 4.71296 4.81004 4.92728 4.94849 5.14931 5.15767 5.17952 5.32215 5.37304 5.43175 5.48486 5.64590 5.69283 5.72942 5.74944 5.80018 5.80761 5.89141 6.00724 6.20882 6.26242 6.35948 6.39857 6.44315 6.59907 6.66524 6.98933 7.23094 7.84756 7.91999 8.56454 8.67138 9.68452 10.27864 10.64782 11.59515 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008885 B = 0.006249 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.576221 B = 4479.307793 C = 6636.047078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.201 3.799 3 C 0.139 3.861 4 N -0.723 5.723 5 C -0.223 4.223 6 H 0.067 0.933 7 C -0.017 4.017 8 N -0.936 5.936 9 Si 0.900 3.100 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.294 1.294 13 N -0.717 5.717 14 C 0.519 3.481 15 O -0.514 6.514 16 C -0.106 4.106 17 C -0.178 4.178 18 C 0.486 3.514 19 F -0.154 7.154 20 F -0.191 7.191 21 F -0.181 7.181 22 C -0.153 4.153 23 C -0.120 4.120 24 C -0.138 4.138 25 C -0.165 4.165 26 C -0.191 4.191 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.384 0.616 33 H 0.251 0.749 34 H 0.394 0.606 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 -11.470 8.035 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.115 3.885 3 C 0.011 3.989 4 N -0.368 5.368 5 C -0.354 4.354 6 H 0.085 0.915 7 C -0.212 4.212 8 N -0.586 5.586 9 Si 0.732 3.268 10 H -0.207 1.207 11 H -0.221 1.221 12 H -0.221 1.221 13 N -0.371 5.371 14 C 0.304 3.696 15 O -0.389 6.389 16 C -0.146 4.146 17 C -0.180 4.180 18 C 0.432 3.568 19 F -0.135 7.135 20 F -0.172 7.172 21 F -0.162 7.162 22 C -0.190 4.190 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.202 4.202 26 C -0.228 4.228 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.218 0.782 33 H 0.060 0.940 34 H 0.230 0.770 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.593 -10.493 8.108 18.288 hybrid contribution 1.506 0.437 -0.182 1.579 sum -11.087 -10.056 7.926 16.937 Atomic orbital electron populations 1.22051 0.94439 1.01405 1.03057 1.20061 0.93034 0.93354 0.82013 1.21144 0.86721 0.91485 0.99533 1.42216 0.99090 1.06237 1.89229 1.19265 0.88985 0.86277 1.40918 0.91515 1.24625 0.96276 0.96490 1.03797 1.69654 1.06362 1.23568 1.59008 0.86190 0.79994 0.83569 0.77002 1.20687 1.22083 1.22121 1.46074 1.59010 1.26420 1.05574 1.20097 0.80437 0.84932 0.84137 1.90658 1.38957 1.23214 1.86095 1.21163 1.04352 0.98505 0.90537 1.21958 0.98379 0.98390 0.99286 1.19354 0.79703 0.83939 0.73829 1.93354 1.94632 1.66275 1.59194 1.93115 1.94073 1.85848 1.44178 1.93185 1.37944 1.88956 1.96120 1.23293 1.02094 0.99762 0.93871 1.22947 0.90236 1.01903 1.00641 1.22389 1.02660 0.91423 0.99164 1.22900 0.90751 1.03027 1.03511 1.23016 1.01214 0.96012 1.02594 0.93090 0.90844 0.92018 0.96383 0.92762 0.78172 0.93952 0.77043 0.87661 0.87563 0.87190 0.87456 0.87676 0.87203 0.86845 0.88416 0.88611 0.89291 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.43 37.15 0.31 -1.81 16 2 C 0.20 3.26 0.51 -131.82 -0.07 3.19 16 3 C 0.14 3.00 4.87 -4.04 -0.02 2.98 16 4 N -0.72 -18.51 5.22 -59.91 -0.31 -18.82 16 5 C -0.22 -6.50 9.99 -15.06 -0.15 -6.65 16 6 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 8 N -0.94 -28.55 13.06 55.49 0.72 -27.83 16 9 Si 0.90 23.57 29.55 -169.99 -5.02 18.55 16 10 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 12 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 13 N -0.72 -10.74 4.34 -47.61 -0.21 -10.95 16 14 C 0.52 8.24 6.93 -10.99 -0.08 8.16 16 15 O -0.51 -9.59 10.10 5.56 0.06 -9.54 16 16 C -0.11 -1.33 5.61 -27.89 -0.16 -1.48 16 17 C -0.18 -2.32 1.34 -154.51 -0.21 -2.52 16 18 C 0.49 8.13 3.08 37.16 0.11 8.24 16 19 F -0.15 -3.23 15.60 2.25 0.04 -3.19 16 20 F -0.19 -2.93 15.92 2.25 0.04 -2.90 16 21 F -0.18 -3.24 16.69 2.25 0.04 -3.20 16 22 C -0.15 -1.40 9.59 -26.73 -0.26 -1.66 16 23 C -0.12 -1.32 8.68 -26.73 -0.23 -1.55 16 24 C -0.14 -2.07 4.54 -90.61 -0.41 -2.48 16 25 C -0.16 -2.42 8.59 -26.73 -0.23 -2.65 16 26 C -0.19 -2.24 9.65 -26.73 -0.26 -2.50 16 27 H 0.05 0.62 8.04 -51.93 -0.42 0.20 16 28 H 0.07 1.14 6.52 -51.93 -0.34 0.80 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 1.30 5.85 -51.93 -0.30 1.00 16 32 H 0.38 9.93 6.01 -40.82 -0.25 9.69 16 33 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.39 5.10 5.63 -40.82 -0.23 4.87 16 35 H 0.11 0.91 7.95 -51.93 -0.41 0.49 16 36 H 0.11 1.42 7.58 -51.93 -0.39 1.03 16 37 H 0.11 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.11 0.94 7.56 -51.93 -0.39 0.55 16 39 H 0.10 1.19 8.02 -51.93 -0.42 0.78 16 40 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 42 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.10 1.46 6.21 -51.93 -0.32 1.13 16 44 H 0.09 0.93 7.81 -51.93 -0.41 0.53 16 45 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -33.78 369.37 -7.20 -40.98 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -6.38 Total: 12.65 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.73 Total: -1.32 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: 0.20 Total: -57.60 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 0.11 Total: -9.29 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.78 -7.20 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495258933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.224 kcal (2) G-P(sol) polarization free energy of solvation -33.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds