Wall clock time and date at job start Tue Mar 31 2020 18:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47286 * 2 1 4 4 N 1.46501 * 109.47499 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00590 * 180.02562 * 4 3 2 6 6 H 1.07999 * 119.99522 * 359.97438 * 5 4 3 7 7 C 1.38808 * 120.00506 * 179.97438 * 5 4 3 8 8 N 1.31625 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00124 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47169 * 120.00296 * 9 7 5 12 12 H 1.48503 * 109.46703 * 239.99947 * 9 7 5 13 13 N 1.46506 * 109.47247 * 120.00370 * 2 1 3 14 14 C 1.34777 * 119.99707 * 293.88792 * 13 2 1 15 15 O 1.21275 * 119.99975 * 3.13926 * 14 13 2 16 16 C 1.50695 * 119.99817 * 183.13822 * 14 13 2 17 17 C 1.52997 * 109.47129 * 174.71985 * 16 14 13 18 18 C 1.52997 * 115.55206 * 279.85833 * 17 16 14 19 19 F 1.39901 * 109.47236 * 67.92198 * 18 17 16 20 20 F 1.39898 * 109.47564 * 187.92269 * 18 17 16 21 21 F 1.39899 * 109.47345 * 307.92399 * 18 17 16 22 22 C 1.53002 * 117.49855 * 134.15238 * 17 16 14 23 23 C 1.52997 * 60.00039 * 252.51097 * 22 17 16 24 24 C 1.53011 * 109.47094 * 240.00071 * 2 1 3 25 25 C 1.52999 * 117.51812 * 219.33276 * 24 2 1 26 26 C 1.52999 * 117.49790 * 287.96369 * 24 2 1 27 27 H 1.09004 * 109.47603 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47095 * 299.99836 * 1 2 3 29 29 H 1.08998 * 109.47169 * 59.99682 * 1 2 3 30 30 H 1.08998 * 109.47276 * 300.00252 * 3 2 1 31 31 H 1.09001 * 109.46920 * 60.00057 * 3 2 1 32 32 H 0.97001 * 119.99409 * 359.97438 * 4 3 2 33 33 H 0.97001 * 120.00037 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99686 * 113.89092 * 13 2 1 35 35 H 1.08997 * 109.47516 * 294.72336 * 16 14 13 36 36 H 1.09003 * 109.46965 * 54.72255 * 16 14 13 37 37 H 1.08997 * 117.49915 * 0.02562 * 22 17 16 38 38 H 1.08997 * 117.49950 * 145.01947 * 22 17 16 39 39 H 1.09003 * 117.50387 * 252.51412 * 23 22 17 40 40 H 1.09001 * 117.50057 * 107.48472 * 23 22 17 41 41 H 1.08996 * 115.54357 * 73.63108 * 24 2 1 42 42 H 1.09001 * 117.49456 * 214.97586 * 25 24 2 43 43 H 1.08995 * 117.49668 * 359.97438 * 25 24 2 44 44 H 1.08996 * 117.50005 * 359.96824 * 26 24 2 45 45 H 1.08995 * 117.49682 * 144.99836 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1897 2.6284 -0.0002 6 1 3.6497 3.5636 0.0002 7 6 5.5778 2.6284 -0.0002 8 7 6.2359 1.4885 -0.0012 9 14 6.5118 4.2461 0.0010 10 1 5.5468 5.3747 0.0014 11 1 7.3657 4.3238 1.2136 12 1 7.3655 4.3257 -1.2115 13 7 2.0183 -0.6907 1.1962 14 6 1.7973 -0.1629 2.4164 15 8 1.1453 0.8535 2.5285 16 6 2.3603 -0.8359 3.6416 17 6 2.0798 0.0284 4.8725 18 6 3.0306 1.2088 5.0806 19 9 2.8316 2.1522 4.0669 20 9 2.7766 1.7990 6.3232 21 9 4.3533 0.7548 5.0417 22 6 1.5408 -0.6735 6.1206 23 6 0.6187 0.2169 5.2853 24 6 2.0400 -0.7213 -1.2493 25 6 3.2651 -1.6244 -1.0935 26 6 1.8808 -2.2421 -1.3015 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6766 1.9563 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.9899 0.6024 -0.0006 33 1 7.2059 1.4884 -0.0009 34 1 2.5007 -1.5278 1.1098 35 1 1.8912 -1.8116 3.7682 36 1 3.4365 -0.9627 3.5243 37 1 1.3863 -1.7511 6.0649 38 1 1.8636 -0.2944 7.0902 39 1 0.3348 1.1819 5.7053 40 1 -0.1428 -0.2748 4.6798 41 1 1.9353 -0.1719 -2.1849 42 1 3.9665 -1.6691 -1.9267 43 1 3.7082 -1.7045 -0.1010 44 1 1.4133 -2.7288 -0.4456 45 1 1.6716 -2.6932 -2.2714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495258933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:43 Heat of formation + Delta-G solvation = -138.487851 kcal Electronic energy + Delta-G solvation = -31794.360500 eV Core-core repulsion = 27205.470653 eV Total energy + Delta-G solvation = -4588.889847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -51.04733 -48.63516 -48.48045 -41.47256 -39.47588 -37.95567 -36.20334 -34.73174 -33.25416 -31.84002 -30.04082 -27.57844 -27.40357 -24.83393 -23.83455 -23.51636 -23.09491 -22.47305 -21.18675 -20.16397 -19.40290 -19.22913 -19.12769 -18.60231 -18.04972 -16.98420 -16.34486 -16.08979 -16.04027 -15.84690 -15.45470 -15.34570 -15.17859 -15.13660 -14.99995 -14.84213 -14.69894 -14.64460 -14.44377 -14.01965 -13.88538 -13.68434 -13.40500 -13.10190 -12.88751 -12.71325 -12.62769 -12.46381 -12.36255 -12.30745 -12.16175 -12.00660 -11.77233 -11.63955 -11.36664 -11.08362 -10.98619 -10.91931 -10.35323 -9.78242 -8.86790 -7.93576 -5.16696 1.39687 1.41462 1.50455 1.78231 1.84036 2.18012 2.53275 2.57907 2.86254 2.98212 3.00114 3.39022 3.43787 3.48101 3.64655 3.81627 3.86203 3.88537 4.03298 4.13793 4.21210 4.36252 4.51184 4.56776 4.63220 4.69965 4.71234 4.75418 4.84932 4.88482 4.92910 4.96755 5.02304 5.12318 5.15125 5.25268 5.30554 5.33488 5.41262 5.49080 5.80770 6.30263 6.74904 7.38159 7.49314 8.16063 8.46837 9.29445 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.008885 B = 0.006249 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3150.576221 B = 4479.307793 C = 6636.047078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.210 3.790 3 C 0.138 3.862 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.057 0.943 7 C -0.069 4.069 8 N -0.959 5.959 9 Si 0.958 3.042 10 H -0.276 1.276 11 H -0.296 1.296 12 H -0.287 1.287 13 N -0.712 5.712 14 C 0.507 3.493 15 O -0.547 6.547 16 C -0.098 4.098 17 C -0.204 4.204 18 C 0.473 3.527 19 F -0.188 7.188 20 F -0.186 7.186 21 F -0.193 7.193 22 C -0.115 4.115 23 C -0.122 4.122 24 C -0.160 4.160 25 C -0.184 4.184 26 C -0.143 4.143 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.010 0.990 31 H 0.029 0.971 32 H 0.382 0.618 33 H 0.249 0.751 34 H 0.405 0.595 35 H 0.155 0.845 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.541 -14.067 8.615 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.124 3.876 3 C 0.011 3.989 4 N -0.369 5.369 5 C -0.367 4.367 6 H 0.075 0.925 7 C -0.261 4.261 8 N -0.610 5.610 9 Si 0.788 3.212 10 H -0.201 1.201 11 H -0.224 1.224 12 H -0.214 1.214 13 N -0.367 5.367 14 C 0.294 3.706 15 O -0.424 6.424 16 C -0.138 4.138 17 C -0.205 4.205 18 C 0.419 3.581 19 F -0.170 7.170 20 F -0.168 7.168 21 F -0.175 7.175 22 C -0.151 4.151 23 C -0.159 4.159 24 C -0.178 4.178 25 C -0.221 4.221 26 C -0.179 4.179 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.216 0.784 33 H 0.058 0.942 34 H 0.243 0.757 35 H 0.173 0.827 36 H 0.113 0.887 37 H 0.166 0.834 38 H 0.130 0.870 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.119 0.881 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.131 0.869 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.978 -13.109 8.686 21.040 hybrid contribution 1.923 1.332 -0.339 2.364 sum -12.055 -11.777 8.347 18.807 Atomic orbital electron populations 1.21954 0.92387 1.03076 1.02468 1.19830 0.94353 0.90139 0.83298 1.21204 0.84444 0.95602 0.97672 1.42264 1.00731 1.05045 1.88818 1.19511 0.89609 0.87246 1.40338 0.92523 1.25300 0.97014 0.99471 1.04338 1.69772 1.06277 1.25032 1.59966 0.85289 0.78673 0.80410 0.76798 1.20081 1.22388 1.21370 1.46038 1.58882 1.26665 1.05079 1.20812 0.79937 0.84671 0.85183 1.90648 1.40511 1.24607 1.86645 1.21215 1.03768 1.00240 0.88566 1.22029 0.98658 0.97986 1.01868 1.20084 0.80148 0.84729 0.73156 1.93277 1.94820 1.67998 1.60891 1.93108 1.93985 1.86048 1.43641 1.93147 1.39211 1.88959 1.96154 1.23512 0.98118 1.01409 0.92110 1.23014 0.89354 1.02270 1.01224 1.22299 1.03887 0.93698 0.97941 1.22863 0.91814 1.04796 1.02666 1.23096 0.97505 0.92749 1.04568 0.90142 0.92515 0.91562 0.97233 0.95349 0.78417 0.94222 0.75721 0.82689 0.88674 0.83427 0.87044 0.88867 0.86051 0.88073 0.89689 0.89421 0.86933 0.87027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.43 71.98 0.61 -3.13 16 2 C 0.21 6.71 0.51 3.60 0.00 6.71 16 3 C 0.14 6.16 4.87 86.38 0.42 6.58 16 4 N -0.73 -38.34 5.22 -343.46 -1.79 -40.13 16 5 C -0.23 -14.11 9.99 84.03 0.84 -13.27 16 6 H 0.06 3.45 7.83 -2.91 -0.02 3.42 16 7 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 8 N -0.96 -59.60 13.06 21.65 0.28 -59.32 16 9 Si 0.96 49.40 29.55 68.60 2.03 51.43 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.30 -15.35 7.11 99.48 0.71 -14.64 16 12 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 13 N -0.71 -20.56 4.34 -422.92 -1.84 -22.39 16 14 C 0.51 15.76 6.93 87.66 0.61 16.37 16 15 O -0.55 -20.71 10.10 -3.01 -0.03 -20.74 16 16 C -0.10 -2.28 5.61 29.85 0.17 -2.11 16 17 C -0.20 -5.00 1.34 -52.18 -0.07 -5.07 16 18 C 0.47 16.08 3.08 71.98 0.22 16.30 16 19 F -0.19 -8.35 15.60 44.97 0.70 -7.64 16 20 F -0.19 -5.78 15.92 44.97 0.72 -5.07 16 21 F -0.19 -7.09 16.69 44.97 0.75 -6.33 16 22 C -0.12 -1.69 9.59 30.59 0.29 -1.40 16 23 C -0.12 -2.43 8.68 30.59 0.27 -2.17 16 24 C -0.16 -4.62 4.54 -10.79 -0.05 -4.66 16 25 C -0.18 -5.24 8.59 30.60 0.26 -4.97 16 26 C -0.14 -2.85 9.65 30.60 0.30 -2.56 16 27 H 0.08 1.67 8.04 -2.38 -0.02 1.65 16 28 H 0.06 1.72 6.52 -2.39 -0.02 1.70 16 29 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.03 1.44 5.85 -2.39 -0.01 1.42 16 32 H 0.38 20.32 6.01 -92.71 -0.56 19.76 16 33 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 34 H 0.40 9.73 5.63 -92.71 -0.52 9.21 16 35 H 0.16 1.96 7.95 -2.39 -0.02 1.94 16 36 H 0.09 2.45 7.58 -2.39 -0.02 2.43 16 37 H 0.15 1.11 8.08 -2.39 -0.02 1.09 16 38 H 0.11 1.59 7.56 -2.39 -0.02 1.58 16 39 H 0.09 2.07 8.02 -2.39 -0.02 2.05 16 40 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.09 2.62 6.21 -2.39 -0.01 2.61 16 44 H 0.11 1.78 7.81 -2.39 -0.02 1.76 16 45 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -77.16 369.37 5.10 -72.05 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: -0.04 Total: 35.22 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 4.33 Total: 2.93 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -3.35 Total: -121.85 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.03 Total: -20.74 kcal Atomic # 9 Polarization: -21.21 SS G_CDS: 2.17 Total: -19.04 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Total: -77.16 5.10 -72.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495258933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.436 kcal (2) G-P(sol) polarization free energy of solvation -77.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds