Wall clock time and date at job start Tue Mar 31 2020 18:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47685 * 354.51448 * 3 2 1 5 5 C 1.34779 * 119.99844 * 270.00315 * 4 3 2 6 6 O 1.21284 * 119.99785 * 179.97438 * 5 4 3 7 7 C 1.50693 * 120.00150 * 359.97438 * 5 4 3 8 8 C 1.52996 * 109.47056 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.75357 * 54.30109 * 8 7 5 10 10 C 1.54263 * 110.84738 * 290.82481 * 8 7 5 11 11 O 1.45366 * 106.63440 * 226.61681 * 10 8 7 12 12 C 1.34009 * 111.49357 * 357.73342 * 11 10 8 13 13 O 1.20825 * 125.69642 * 199.68553 * 12 11 10 14 14 C 1.51992 * 108.71004 * 19.50719 * 12 11 10 15 15 C 1.46502 * 120.00102 * 89.99465 * 4 3 2 16 16 C 1.53039 * 109.45819 * 60.00750 * 15 4 3 17 17 C 1.53192 * 109.31596 * 178.61544 * 16 15 4 18 18 N 1.46931 * 108.77565 * 54.62962 * 17 16 15 19 19 C 1.36933 * 120.63025 * 126.37324 * 18 17 16 20 20 H 1.08003 * 119.99756 * 332.13537 * 19 18 17 21 21 C 1.38810 * 119.99898 * 152.13970 * 19 18 17 22 22 N 1.31610 * 120.00090 * 342.99442 * 21 19 18 23 23 Si 1.86805 * 119.99845 * 162.99929 * 21 19 18 24 24 H 1.48502 * 109.46992 * 266.23159 * 23 21 19 25 25 H 1.48503 * 109.46878 * 146.23043 * 23 21 19 26 26 H 1.48501 * 109.47000 * 26.23150 * 23 21 19 27 27 C 1.46930 * 118.73686 * 306.64806 * 18 17 16 28 28 C 1.52764 * 109.00948 * 53.30825 * 27 18 17 29 29 H 4.40645 * 5.51281 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47287 * 234.50989 * 3 2 1 31 31 H 1.09004 * 109.47027 * 114.51758 * 3 2 1 32 32 H 1.09001 * 109.46800 * 300.00301 * 7 5 4 33 33 H 1.09004 * 109.47253 * 59.99950 * 7 5 4 34 34 H 1.08995 * 110.02545 * 345.91430 * 10 8 7 35 35 H 1.09005 * 110.02210 * 107.32316 * 10 8 7 36 36 H 1.09001 * 110.89613 * 213.34548 * 14 12 11 37 37 H 1.09000 * 110.66633 * 90.00796 * 14 12 11 38 38 H 1.09000 * 109.45886 * 179.97438 * 15 4 3 39 39 H 1.09001 * 109.50122 * 58.65953 * 16 15 4 40 40 H 1.09004 * 109.51973 * 298.57853 * 16 15 4 41 41 H 1.09001 * 109.58323 * 294.84684 * 17 16 15 42 42 H 1.08996 * 109.59033 * 174.41764 * 17 16 15 43 43 H 0.97003 * 120.00299 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.58125 * 173.14505 * 27 18 17 45 45 H 1.08997 * 109.58640 * 293.56844 * 27 18 17 46 46 H 1.09002 * 109.56068 * 185.55082 * 28 27 18 47 47 H 1.08999 * 109.35752 * 65.49633 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3739 0.1320 5 6 3.3599 -1.8947 1.3547 6 8 3.7644 -3.0328 1.4640 7 6 3.1088 -1.0627 2.5858 8 6 3.4411 -1.8843 3.8329 9 1 4.4560 -2.2778 3.7771 10 6 2.4201 -3.0243 4.0275 11 8 2.0291 -2.9982 5.4273 12 6 2.6942 -2.0529 6.1055 13 8 2.8345 -2.0126 7.3048 14 6 3.2475 -1.0409 5.1155 15 6 3.3795 -2.1826 -1.0649 16 6 4.4341 -1.4970 -1.9366 17 6 4.7125 -2.3622 -3.1699 18 7 3.4415 -2.6285 -3.8573 19 6 3.2961 -2.3458 -5.1892 20 1 3.8794 -1.5568 -5.6406 21 6 2.3991 -3.0733 -5.9593 22 7 1.9410 -4.2270 -5.5220 23 14 1.8421 -2.4146 -7.6162 24 1 0.5763 -1.6566 -7.4475 25 1 1.6198 -3.5478 -8.5499 26 1 2.8875 -1.5160 -8.1684 27 6 2.3276 -3.1983 -3.0870 28 6 2.0778 -2.3288 -1.8560 29 1 -1.0498 -0.0003 0.0002 30 1 3.0091 0.5974 0.8367 31 1 3.0091 0.4273 -0.9350 32 1 3.7388 -0.1737 2.5582 33 1 2.0608 -0.7645 2.6153 34 1 1.5493 -2.8577 3.3935 35 1 2.8802 -3.9826 3.7862 36 1 4.2005 -0.6402 5.4609 37 1 2.5301 -0.2383 4.9445 38 1 3.7377 -3.1689 -0.7698 39 1 5.3536 -1.3721 -1.3648 40 1 4.0667 -0.5206 -2.2527 41 1 5.1650 -3.3043 -2.8606 42 1 5.3878 -1.8334 -3.8424 43 1 1.3144 -4.7355 -6.0602 44 1 1.4299 -3.2210 -3.7050 45 1 2.5817 -4.2100 -2.7709 46 1 1.3201 -2.7961 -1.2269 47 1 1.7321 -1.3449 -2.1728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500034624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:33 Heat of formation + Delta-G solvation = -37.508852 kcal Electronic energy + Delta-G solvation = -29383.932191 eV Core-core repulsion = 25341.277862 eV Total energy + Delta-G solvation = -4042.654329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36753 -40.21095 -37.96644 -37.49065 -35.78392 -34.63042 -33.17139 -32.22164 -30.49301 -29.85167 -29.06442 -27.61963 -27.22277 -25.02008 -22.61602 -22.27159 -21.73777 -21.24644 -19.71539 -19.30491 -18.16645 -17.62121 -17.27002 -17.02539 -16.78453 -16.33544 -16.02406 -15.70317 -14.94115 -14.61285 -14.25409 -13.97215 -13.91422 -13.73006 -13.66464 -13.54357 -13.27943 -13.07855 -12.91341 -12.67060 -12.49340 -12.28418 -11.83247 -11.59792 -11.56547 -11.29753 -11.02754 -10.79946 -10.77997 -10.60434 -10.52740 -10.49667 -10.26925 -10.21924 -10.13896 -9.87697 -9.77017 -9.56990 -8.72976 -8.47588 -6.74749 -5.84144 -3.27138 1.74064 2.32631 2.52646 2.72335 2.95870 3.18445 3.33656 3.40832 3.42213 3.55944 3.81794 4.11259 4.25059 4.27218 4.44520 4.54992 4.80251 4.85878 4.92500 5.05446 5.11740 5.17304 5.22392 5.28951 5.36884 5.41504 5.43668 5.51942 5.60790 5.75123 5.82823 5.99191 6.11299 6.22595 6.38587 6.48430 6.50306 6.55892 6.69613 6.76115 6.87075 7.14660 7.27609 7.33883 7.50547 7.59616 7.74440 8.05030 8.39239 9.15348 9.78537 10.34934 11.24600 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002536 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.702399 B =11036.422230 C =11235.160060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.208 4.208 3 C 0.215 3.785 4 N -0.599 5.599 5 C 0.512 3.488 6 O -0.536 6.536 7 C -0.135 4.135 8 C -0.106 4.106 9 H 0.109 0.891 10 C 0.065 3.935 11 O -0.351 6.351 12 C 0.486 3.514 13 O -0.459 6.459 14 C -0.184 4.184 15 C 0.144 3.856 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.254 4.254 20 H 0.066 0.934 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.174 3.826 28 C -0.141 4.141 29 H 0.216 0.784 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.021 0.979 42 H 0.058 0.942 43 H 0.254 0.746 44 H 0.090 0.910 45 H 0.019 0.981 46 H 0.049 0.951 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 10.715 16.622 19.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.209 4.209 3 C 0.092 3.908 4 N -0.331 5.331 5 C 0.300 3.700 6 O -0.413 6.413 7 C -0.175 4.175 8 C -0.125 4.125 9 H 0.127 0.873 10 C -0.009 4.009 11 O -0.267 6.267 12 C 0.326 3.674 13 O -0.343 6.343 14 C -0.222 4.222 15 C 0.043 3.957 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.314 5.314 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C 0.047 3.953 28 C -0.181 4.181 29 H 0.233 0.767 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.135 0.865 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.108 0.892 45 H 0.037 0.963 46 H 0.067 0.933 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.003 9.830 17.201 19.837 hybrid contribution -0.678 0.510 -1.148 1.427 sum 0.326 10.340 16.053 19.098 Atomic orbital electron populations 1.24946 0.95944 0.98470 1.00572 1.23460 0.94843 1.01732 1.00885 1.18407 0.83906 0.84013 1.04442 1.48301 1.64284 1.13777 1.06696 1.20515 0.77408 0.87546 0.84507 1.90716 1.45796 1.18528 1.86283 1.21798 1.04526 0.99432 0.91696 1.22255 1.02131 0.95052 0.93067 0.87259 1.24099 0.98795 1.01144 0.76896 1.86792 1.60173 1.55439 1.24332 1.23214 0.74471 0.81388 0.88297 1.90724 1.54206 1.75446 1.13939 1.23225 1.05125 0.99230 0.94630 1.21282 0.96766 0.95075 0.82623 1.22397 0.97249 1.00316 0.97951 1.20858 0.89591 0.95801 0.91683 1.44074 1.06768 1.74256 1.06343 1.19181 1.22545 1.12047 0.84590 0.91609 1.25054 1.01737 0.94991 0.97777 1.70028 1.34350 1.11659 1.38507 0.86284 0.78828 0.78008 0.83692 1.21495 1.21738 1.20370 1.20672 0.93376 0.92159 0.89077 1.22466 0.95084 1.01930 0.98668 0.76742 0.88441 0.87397 0.87687 0.88143 0.88678 0.87505 0.86790 0.86524 0.88378 0.92731 0.92088 0.96152 0.92378 0.93567 0.89216 0.96266 0.93264 0.92346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 19.25 29.55 0.57 -1.28 16 2 C -0.21 -2.24 11.92 -37.12 -0.44 -2.68 16 3 C 0.22 2.03 5.15 -6.83 -0.04 1.99 16 4 N -0.60 -7.24 2.37 -169.38 -0.40 -7.65 16 5 C 0.51 5.86 7.48 -10.99 -0.08 5.78 16 6 O -0.54 -8.01 14.54 5.55 0.08 -7.92 16 7 C -0.13 -0.91 3.53 -27.89 -0.10 -1.00 16 8 C -0.11 -0.75 2.67 -89.05 -0.24 -0.99 16 9 H 0.11 0.82 7.97 -51.93 -0.41 0.41 16 10 C 0.06 0.58 6.63 37.82 0.25 0.83 16 11 O -0.35 -3.87 10.95 -38.29 -0.42 -4.29 16 12 C 0.49 5.12 8.63 36.64 0.32 5.44 16 13 O -0.46 -6.44 18.00 -18.37 -0.33 -6.77 16 14 C -0.18 -1.12 6.54 -26.34 -0.17 -1.29 16 15 C 0.14 2.28 2.48 -67.89 -0.17 2.11 16 16 C -0.14 -2.18 5.31 -26.61 -0.14 -2.32 16 17 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 18 N -0.59 -14.16 3.00 -172.57 -0.52 -14.68 16 19 C -0.25 -6.72 9.58 -15.06 -0.14 -6.86 16 20 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 21 C 0.00 0.09 4.91 -17.44 -0.09 0.00 16 22 N -0.90 -25.66 11.20 55.49 0.62 -25.04 16 23 Si 0.90 21.14 29.59 -169.99 -5.03 16.12 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 C 0.17 4.00 5.28 -3.93 -0.02 3.98 16 28 C -0.14 -2.57 4.71 -26.83 -0.13 -2.69 16 29 H 0.22 1.59 7.80 -54.10 -0.42 1.17 16 30 H 0.10 0.56 6.44 -51.93 -0.33 0.23 16 31 H 0.11 1.06 6.46 -51.93 -0.34 0.72 16 32 H 0.10 0.44 7.40 -51.93 -0.38 0.06 16 33 H 0.10 0.58 7.85 -51.93 -0.41 0.18 16 34 H 0.10 0.80 7.70 -51.93 -0.40 0.40 16 35 H 0.11 1.03 8.07 -51.93 -0.42 0.61 16 36 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.12 0.48 7.91 -51.93 -0.41 0.07 16 38 H 0.10 1.79 6.90 -51.93 -0.36 1.43 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.93 6.72 -51.93 -0.35 0.58 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.09 2.34 6.06 -51.93 -0.31 2.02 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.08 7.02 -51.93 -0.36 0.71 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -33.31 380.72 -7.89 -41.20 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.99 Total: -0.63 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.64 Total: 3.92 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: -0.30 Total: -47.36 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.67 Total: -18.98 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.31 -7.89 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500034624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.687 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds