Wall clock time and date at job start Tue Mar 31 2020 18:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47685 * 354.51448 * 3 2 1 5 5 C 1.34779 * 119.99844 * 270.00315 * 4 3 2 6 6 O 1.21284 * 119.99785 * 179.97438 * 5 4 3 7 7 C 1.50693 * 120.00150 * 359.97438 * 5 4 3 8 8 C 1.52996 * 109.47056 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.75357 * 54.30109 * 8 7 5 10 10 C 1.54263 * 110.84738 * 290.82481 * 8 7 5 11 11 O 1.45366 * 106.63440 * 226.61681 * 10 8 7 12 12 C 1.34009 * 111.49357 * 357.73342 * 11 10 8 13 13 O 1.20825 * 125.69642 * 199.68553 * 12 11 10 14 14 C 1.51992 * 108.71004 * 19.50719 * 12 11 10 15 15 C 1.46502 * 120.00102 * 89.99465 * 4 3 2 16 16 C 1.53039 * 109.45819 * 60.00750 * 15 4 3 17 17 C 1.53192 * 109.31596 * 178.61544 * 16 15 4 18 18 N 1.46931 * 108.77565 * 54.62962 * 17 16 15 19 19 C 1.36933 * 120.63025 * 126.37324 * 18 17 16 20 20 H 1.08003 * 119.99756 * 332.13537 * 19 18 17 21 21 C 1.38810 * 119.99898 * 152.13970 * 19 18 17 22 22 N 1.31610 * 120.00090 * 342.99442 * 21 19 18 23 23 Si 1.86805 * 119.99845 * 162.99929 * 21 19 18 24 24 H 1.48502 * 109.46992 * 266.23159 * 23 21 19 25 25 H 1.48503 * 109.46878 * 146.23043 * 23 21 19 26 26 H 1.48501 * 109.47000 * 26.23150 * 23 21 19 27 27 C 1.46930 * 118.73686 * 306.64806 * 18 17 16 28 28 C 1.52764 * 109.00948 * 53.30825 * 27 18 17 29 29 H 4.40645 * 5.51281 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.47287 * 234.50989 * 3 2 1 31 31 H 1.09004 * 109.47027 * 114.51758 * 3 2 1 32 32 H 1.09001 * 109.46800 * 300.00301 * 7 5 4 33 33 H 1.09004 * 109.47253 * 59.99950 * 7 5 4 34 34 H 1.08995 * 110.02545 * 345.91430 * 10 8 7 35 35 H 1.09005 * 110.02210 * 107.32316 * 10 8 7 36 36 H 1.09001 * 110.89613 * 213.34548 * 14 12 11 37 37 H 1.09000 * 110.66633 * 90.00796 * 14 12 11 38 38 H 1.09000 * 109.45886 * 179.97438 * 15 4 3 39 39 H 1.09001 * 109.50122 * 58.65953 * 16 15 4 40 40 H 1.09004 * 109.51973 * 298.57853 * 16 15 4 41 41 H 1.09001 * 109.58323 * 294.84684 * 17 16 15 42 42 H 1.08996 * 109.59033 * 174.41764 * 17 16 15 43 43 H 0.97003 * 120.00299 * 180.02562 * 22 21 19 44 44 H 1.09005 * 109.58125 * 173.14505 * 27 18 17 45 45 H 1.08997 * 109.58640 * 293.56844 * 27 18 17 46 46 H 1.09002 * 109.56068 * 185.55082 * 28 27 18 47 47 H 1.08999 * 109.35752 * 65.49633 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3739 0.1320 5 6 3.3599 -1.8947 1.3547 6 8 3.7644 -3.0328 1.4640 7 6 3.1088 -1.0627 2.5858 8 6 3.4411 -1.8843 3.8329 9 1 4.4560 -2.2778 3.7771 10 6 2.4201 -3.0243 4.0275 11 8 2.0291 -2.9982 5.4273 12 6 2.6942 -2.0529 6.1055 13 8 2.8345 -2.0126 7.3048 14 6 3.2475 -1.0409 5.1155 15 6 3.3795 -2.1826 -1.0649 16 6 4.4341 -1.4970 -1.9366 17 6 4.7125 -2.3622 -3.1699 18 7 3.4415 -2.6285 -3.8573 19 6 3.2961 -2.3458 -5.1892 20 1 3.8794 -1.5568 -5.6406 21 6 2.3991 -3.0733 -5.9593 22 7 1.9410 -4.2270 -5.5220 23 14 1.8421 -2.4146 -7.6162 24 1 0.5763 -1.6566 -7.4475 25 1 1.6198 -3.5478 -8.5499 26 1 2.8875 -1.5160 -8.1684 27 6 2.3276 -3.1983 -3.0870 28 6 2.0778 -2.3288 -1.8560 29 1 -1.0498 -0.0003 0.0002 30 1 3.0091 0.5974 0.8367 31 1 3.0091 0.4273 -0.9350 32 1 3.7388 -0.1737 2.5582 33 1 2.0608 -0.7645 2.6153 34 1 1.5493 -2.8577 3.3935 35 1 2.8802 -3.9826 3.7862 36 1 4.2005 -0.6402 5.4609 37 1 2.5301 -0.2383 4.9445 38 1 3.7377 -3.1689 -0.7698 39 1 5.3536 -1.3721 -1.3648 40 1 4.0667 -0.5206 -2.2527 41 1 5.1650 -3.3043 -2.8606 42 1 5.3878 -1.8334 -3.8424 43 1 1.3144 -4.7355 -6.0602 44 1 1.4299 -3.2210 -3.7050 45 1 2.5817 -4.2100 -2.7709 46 1 1.3201 -2.7961 -1.2269 47 1 1.7321 -1.3449 -2.1728 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500034624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:32 Heat of formation + Delta-G solvation = -57.211278 kcal Electronic energy + Delta-G solvation = -29384.786552 eV Core-core repulsion = 25341.277862 eV Total energy + Delta-G solvation = -4043.508690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.12992 -41.19110 -39.16321 -38.55542 -36.98795 -35.37052 -34.55241 -33.39963 -32.04532 -31.40390 -29.86341 -28.36775 -28.13830 -26.69636 -23.98445 -23.85386 -22.46532 -22.22862 -20.79929 -20.53691 -19.06322 -18.64033 -18.38961 -18.08531 -17.69942 -17.22806 -17.03475 -16.74649 -16.50195 -15.74448 -15.40372 -15.33556 -14.96923 -14.83922 -14.65239 -14.50821 -14.44462 -14.20688 -14.12324 -13.94171 -13.42020 -13.18649 -13.05931 -12.90766 -12.65111 -12.57647 -12.46841 -12.23542 -12.14725 -11.99339 -11.91589 -11.52404 -11.50069 -11.36631 -11.31725 -11.24328 -11.04929 -10.64666 -10.57426 -9.76471 -8.71511 -7.88040 -5.33906 0.96545 1.46346 1.48304 1.48899 1.57701 1.68618 1.98056 2.23254 2.36914 2.51083 2.94275 3.20597 3.28051 3.49809 3.58792 3.64667 3.66739 3.84071 4.01906 4.10068 4.27805 4.30761 4.36957 4.41586 4.46862 4.48692 4.55443 4.67059 4.67538 4.75120 4.80889 4.85481 4.88248 5.05597 5.08628 5.09315 5.12733 5.18710 5.31906 5.46688 5.57085 5.64112 5.69226 5.78163 6.36835 6.38166 6.42995 6.76819 7.13492 7.17199 7.84354 8.36572 9.19016 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023569 B = 0.002536 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.702399 B =11036.422230 C =11235.160060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.227 4.227 3 C 0.210 3.790 4 N -0.599 5.599 5 C 0.508 3.492 6 O -0.578 6.578 7 C -0.123 4.123 8 C -0.099 4.099 9 H 0.105 0.895 10 C 0.061 3.939 11 O -0.374 6.374 12 C 0.478 3.522 13 O -0.505 6.505 14 C -0.161 4.161 15 C 0.155 3.845 16 C -0.122 4.122 17 C 0.141 3.859 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.072 0.928 21 C -0.053 4.053 22 N -0.938 5.938 23 Si 0.967 3.033 24 H -0.286 1.286 25 H -0.299 1.299 26 H -0.265 1.265 27 C 0.182 3.818 28 C -0.119 4.119 29 H 0.233 0.767 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.148 0.852 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.136 0.864 37 H 0.149 0.851 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.007 0.993 42 H 0.064 0.936 43 H 0.249 0.751 44 H 0.054 0.946 45 H -0.013 1.013 46 H 0.047 0.953 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 14.461 17.461 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.229 4.229 3 C 0.089 3.911 4 N -0.329 5.329 5 C 0.298 3.702 6 O -0.458 6.458 7 C -0.162 4.162 8 C -0.118 4.118 9 H 0.123 0.877 10 C -0.013 4.013 11 O -0.291 6.291 12 C 0.322 3.678 13 O -0.392 6.392 14 C -0.199 4.199 15 C 0.052 3.948 16 C -0.161 4.161 17 C 0.015 3.985 18 N -0.332 5.332 19 C -0.389 4.389 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.584 5.584 23 Si 0.795 3.205 24 H -0.213 1.213 25 H -0.226 1.226 26 H -0.189 1.189 27 C 0.055 3.945 28 C -0.159 4.159 29 H 0.249 0.751 30 H 0.164 0.836 31 H 0.125 0.875 32 H 0.166 0.834 33 H 0.138 0.862 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.154 0.846 37 H 0.166 0.834 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.025 0.975 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.005 0.995 46 H 0.066 0.934 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.647 13.625 18.051 22.675 hybrid contribution -0.875 -0.749 -1.400 1.813 sum 0.772 12.876 16.651 21.063 Atomic orbital electron populations 1.25610 0.96907 0.97884 1.00389 1.23880 0.95590 1.02205 1.01190 1.18787 0.83211 0.82517 1.06577 1.48181 1.64574 1.14606 1.05570 1.21388 0.76035 0.87405 0.85334 1.90718 1.47521 1.20697 1.86821 1.21854 1.06608 0.99529 0.88188 1.22203 1.01134 0.94466 0.93956 0.87702 1.24165 0.99611 1.01583 0.75912 1.86759 1.60557 1.56350 1.25400 1.24017 0.73599 0.81878 0.88328 1.90694 1.55941 1.76470 1.16092 1.23212 1.06706 0.98125 0.91841 1.20777 0.95082 0.94885 0.84104 1.22178 0.98431 0.99533 0.95999 1.21039 0.87927 0.96132 0.93376 1.44324 1.08460 1.74280 1.06126 1.19552 1.21977 1.11597 0.85746 0.91003 1.25830 1.02408 0.95265 1.01305 1.70198 1.35286 1.13092 1.39846 0.85261 0.78520 0.77142 0.79587 1.21267 1.22563 1.18911 1.20404 0.91862 0.91801 0.90420 1.22127 0.96620 1.00568 0.96622 0.75060 0.83624 0.87467 0.83422 0.86201 0.88199 0.89132 0.84568 0.83353 0.91211 0.89967 0.90759 0.97467 0.91783 0.94210 0.92715 0.99526 0.93413 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 19.25 74.32 1.43 -1.93 16 2 C -0.23 -4.11 11.92 31.13 0.37 -3.74 16 3 C 0.21 3.02 5.15 84.58 0.44 3.46 16 4 N -0.60 -12.67 2.37 -808.17 -1.91 -14.59 16 5 C 0.51 10.13 7.48 87.65 0.66 10.79 16 6 O -0.58 -16.70 14.54 -3.04 -0.04 -16.75 16 7 C -0.12 -1.04 3.53 29.84 0.11 -0.93 16 8 C -0.10 -1.07 2.67 -9.78 -0.03 -1.09 16 9 H 0.10 1.30 7.97 -2.39 -0.02 1.28 16 10 C 0.06 1.02 6.63 72.41 0.48 1.50 16 11 O -0.37 -8.06 10.95 -49.68 -0.54 -8.61 16 12 C 0.48 9.45 8.63 71.65 0.62 10.07 16 13 O -0.50 -14.02 18.00 21.60 0.39 -13.63 16 14 C -0.16 -1.29 6.54 30.85 0.20 -1.09 16 15 C 0.15 4.75 2.48 45.02 0.11 4.86 16 16 C -0.12 -3.54 5.31 30.67 0.16 -3.38 16 17 C 0.14 5.53 6.52 86.36 0.56 6.09 16 18 N -0.61 -29.62 3.00 -699.90 -2.10 -31.72 16 19 C -0.26 -13.78 9.58 84.03 0.81 -12.97 16 20 H 0.07 3.68 7.89 -2.91 -0.02 3.65 16 21 C -0.05 -2.91 4.91 84.86 0.42 -2.50 16 22 N -0.94 -55.53 11.20 21.65 0.24 -55.29 16 23 Si 0.97 43.99 29.59 68.60 2.03 46.02 16 24 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 27 C 0.18 8.74 5.28 86.22 0.45 9.19 16 28 C -0.12 -4.35 4.71 30.53 0.14 -4.20 16 29 H 0.23 2.87 7.80 -4.43 -0.03 2.83 16 30 H 0.15 0.69 6.44 -2.39 -0.02 0.68 16 31 H 0.11 1.62 6.46 -2.38 -0.02 1.60 16 32 H 0.15 0.12 7.40 -2.39 -0.02 0.10 16 33 H 0.12 0.69 7.85 -2.38 -0.02 0.67 16 34 H 0.10 1.55 7.70 -2.39 -0.02 1.53 16 35 H 0.09 1.79 8.07 -2.38 -0.02 1.77 16 36 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.15 0.35 7.91 -2.39 -0.02 0.33 16 38 H 0.07 2.58 6.90 -2.39 -0.02 2.56 16 39 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 2.01 6.72 -2.39 -0.02 2.00 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.29 16 42 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 43 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 44 H 0.05 3.00 6.06 -2.38 -0.01 2.98 16 45 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.06 2.21 7.02 -2.39 -0.02 2.20 16 Total: -1.00 -78.33 380.72 5.96 -72.37 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: 0.97 Total: 8.08 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.93 Total: 14.12 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.77 Total: -101.60 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -0.20 Total: -38.99 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -78.33 5.96 -72.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500034624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.161 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds