Wall clock time and date at job start Tue Mar 31 2020 17:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 H 1.08991 * 109.47047 * 55.00313 * 3 2 1 5 5 C 1.52998 * 109.47194 * 294.99910 * 3 2 1 6 6 C 1.53001 * 109.46791 * 175.00095 * 3 2 1 7 7 O 1.42908 * 109.46943 * 184.99893 * 6 3 2 8 8 N 1.41603 * 113.99897 * 180.02562 * 7 6 3 9 9 C 1.34775 * 119.99833 * 180.02562 * 8 7 6 10 10 O 1.21364 * 119.99760 * 359.97438 * 9 8 7 11 11 C 1.49348 * 120.00016 * 179.97438 * 9 8 7 12 12 O 1.21380 * 120.00063 * 359.97438 * 11 9 8 13 13 N 1.34775 * 120.00389 * 179.97438 * 11 9 8 14 14 C 1.39718 * 120.00713 * 175.38114 * 13 11 9 15 15 C 1.38929 * 120.07814 * 214.82095 * 14 13 11 16 16 C 1.38097 * 119.91936 * 179.76380 * 15 14 13 17 17 C 1.38296 * 120.07878 * 0.49203 * 16 15 14 18 18 C 1.50701 * 119.92320 * 179.76388 * 17 16 15 19 19 C 1.50694 * 109.47166 * 270.02158 * 18 17 16 20 20 H 1.07999 * 120.00103 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00232 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99591 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47030 * 89.99672 * 23 21 19 25 25 H 1.48493 * 109.47237 * 209.99736 * 23 21 19 26 26 H 1.48503 * 109.47210 * 330.00169 * 23 21 19 27 27 C 1.38290 * 120.15217 * 359.78042 * 17 16 15 28 28 C 1.38094 * 120.07634 * 359.96309 * 27 17 16 29 29 H 1.09006 * 109.47057 * 300.00666 * 1 2 3 30 30 H 1.09001 * 109.46776 * 59.99556 * 1 2 3 31 31 H 1.08993 * 109.47589 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47399 * 239.99649 * 2 1 3 33 33 H 1.09001 * 109.47021 * 119.99951 * 2 1 3 34 34 H 1.08993 * 109.47137 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47221 * 300.00352 * 5 3 2 36 36 H 1.09005 * 109.47167 * 59.99752 * 5 3 2 37 37 H 1.09005 * 109.47330 * 304.99627 * 6 3 2 38 38 H 1.08997 * 109.47167 * 65.00113 * 6 3 2 39 39 H 0.97005 * 119.99928 * 359.97438 * 8 7 6 40 40 H 0.97006 * 119.99336 * 355.38091 * 13 11 9 41 41 H 1.07992 * 120.03894 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.95939 * 180.25349 * 16 15 14 43 43 H 1.09002 * 109.47277 * 30.02379 * 18 17 16 44 44 H 1.09005 * 109.46903 * 150.01631 * 18 17 16 45 45 H 0.97002 * 119.99958 * 180.02562 * 22 21 19 46 46 H 1.07995 * 119.96050 * 179.97438 * 27 17 16 47 47 H 1.07995 * 120.03960 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 8 4.0317 2.7898 0.2428 8 7 5.4379 2.9030 0.3647 9 6 6.0083 4.1183 0.4832 10 8 5.3167 5.1156 0.4849 11 6 7.4914 4.2378 0.6123 12 8 8.1830 3.2403 0.6110 13 7 8.0619 5.4531 0.7303 14 6 9.4378 5.5609 0.9478 15 6 9.9387 6.5823 1.7453 16 6 11.2989 6.6829 1.9621 17 6 12.1629 5.7746 1.3782 18 6 13.6469 5.8908 1.6128 19 6 14.2558 6.7711 0.5520 20 1 13.6307 7.2028 -0.2157 21 6 15.6111 7.0245 0.5607 22 7 16.3724 6.4983 1.4952 23 14 16.3659 8.1150 -0.7547 24 1 16.3507 9.5272 -0.2955 25 1 17.7668 7.6911 -1.0052 26 1 15.5802 7.9939 -2.0090 27 6 11.6681 4.7600 0.5792 28 6 10.3087 4.6503 0.3624 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9991 3.1540 -1.3075 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3970 37 1 3.8571 0.8799 1.0113 38 1 4.0029 0.9834 -0.7597 39 1 5.9905 2.1058 0.3636 40 1 7.5171 6.2530 0.6641 41 1 9.2650 7.2947 2.1979 42 1 11.6886 7.4742 2.5853 43 1 13.8264 6.3283 2.5949 44 1 14.1005 4.9007 1.5678 45 1 17.3258 6.6769 1.5016 46 1 12.3457 4.0526 0.1244 47 1 9.9230 3.8580 -0.2619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516187654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:44 Heat of formation + Delta-G solvation = -54.067006 kcal Electronic energy + Delta-G solvation = -26944.810015 eV Core-core repulsion = 22901.437671 eV Total energy + Delta-G solvation = -4043.372344 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05723 -39.44900 -38.49649 -37.97465 -36.41700 -35.19119 -33.08006 -32.61509 -30.64616 -30.41089 -30.25866 -27.38712 -27.00578 -24.98178 -23.82737 -22.97464 -22.48205 -21.14549 -20.52275 -20.11679 -19.21156 -18.26873 -17.00419 -16.77766 -16.57270 -16.31784 -16.00857 -15.32318 -15.24971 -14.96929 -14.79237 -14.45977 -14.27128 -14.16452 -13.79146 -13.41273 -13.15722 -12.94936 -12.78293 -12.64583 -12.54919 -12.29749 -12.11995 -11.92081 -11.59428 -11.45830 -11.40848 -11.30986 -11.21608 -11.10935 -10.87084 -10.62553 -10.42979 -10.14079 -9.87499 -9.48555 -9.44790 -9.34855 -8.44512 -8.38118 -7.54229 -6.05821 -4.10074 0.99265 1.05640 1.94837 2.00285 2.90017 2.98215 3.29691 3.36193 3.40267 3.85569 4.07704 4.18200 4.21054 4.33637 4.45099 4.50510 4.65164 4.75000 4.88923 5.03147 5.06292 5.14960 5.28208 5.35348 5.43412 5.43506 5.46643 5.49129 5.56211 5.73431 5.76510 5.87279 5.91298 5.98055 6.10907 6.18015 6.38576 6.55811 6.67692 6.71339 7.07950 7.11405 7.20548 7.44495 7.52736 7.62140 7.78270 7.80851 7.89803 8.29234 8.95241 9.54001 11.03832 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.001579 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.112744 B =17729.011116 C =17832.700108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.083 4.083 4 H 0.084 0.916 5 C -0.151 4.151 6 C 0.031 3.969 7 O -0.134 6.134 8 N -0.571 5.571 9 C 0.523 3.477 10 O -0.500 6.500 11 C 0.517 3.483 12 O -0.501 6.501 13 N -0.627 5.627 14 C 0.091 3.909 15 C -0.132 4.132 16 C -0.109 4.109 17 C -0.034 4.034 18 C 0.046 3.954 19 C -0.513 4.513 20 H 0.058 0.942 21 C 0.059 3.941 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.110 4.110 28 C -0.113 4.113 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.421 0.579 40 H 0.420 0.580 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.030 0.970 44 H 0.030 0.970 45 H 0.262 0.738 46 H 0.124 0.876 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.208 -11.623 -2.347 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.103 0.897 5 C -0.209 4.209 6 C -0.046 4.046 7 O -0.138 6.138 8 N -0.274 5.274 9 C 0.304 3.696 10 O -0.373 6.373 11 C 0.297 3.703 12 O -0.376 6.376 13 N -0.273 5.273 14 C -0.001 4.001 15 C -0.152 4.152 16 C -0.127 4.127 17 C -0.035 4.035 18 C 0.010 3.990 19 C -0.551 4.551 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 C -0.128 4.128 28 C -0.133 4.133 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.263 0.737 40 H 0.257 0.743 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.142 0.858 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -29.210 -11.472 -2.284 31.465 hybrid contribution 0.374 0.325 -0.730 0.883 sum -28.835 -11.147 -3.014 31.061 Atomic orbital electron populations 1.21799 0.95006 1.01947 1.02300 1.21515 0.96655 0.94760 1.02538 1.21139 0.91228 0.97582 1.00361 0.89742 1.21901 1.01683 1.01283 0.95988 1.23251 0.96053 0.83598 1.01718 1.90596 1.00603 1.26350 1.96281 1.47042 0.96494 1.09346 1.74555 1.20060 0.88481 0.82615 0.78459 1.90803 1.63349 1.35792 1.47357 1.19525 0.86990 0.84601 0.79178 1.90808 1.63197 1.36220 1.47371 1.42896 1.07902 1.08179 1.68362 1.17504 0.80511 1.00211 1.01876 1.20803 0.96228 0.98930 0.99230 1.20921 0.91557 0.99507 1.00738 1.20803 0.98816 0.91612 0.92247 1.18380 0.84664 0.98171 0.97820 1.21058 0.92625 1.29693 1.11741 0.92400 1.25007 0.97198 0.96077 0.95981 1.69958 1.05548 1.44292 1.33443 0.86535 0.78435 0.80696 0.82034 1.20578 1.21167 1.19801 1.21022 0.93856 0.98977 0.98983 1.21128 0.92973 0.99334 0.99823 0.92506 0.92192 0.92429 0.91472 0.91551 0.91710 0.92532 0.91960 0.91555 0.91523 0.73677 0.74298 0.86341 0.85672 0.95186 0.95167 0.92818 0.85803 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.67 37.16 0.36 -0.21 16 2 C -0.12 -0.46 5.40 -26.73 -0.14 -0.61 16 3 C -0.08 -0.45 2.63 -90.62 -0.24 -0.69 16 4 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -0.87 8.85 37.16 0.33 -0.55 16 6 C 0.03 0.19 5.61 37.16 0.21 0.40 16 7 O -0.13 -1.34 10.64 -29.65 -0.32 -1.66 16 8 N -0.57 -5.73 6.38 30.88 0.20 -5.54 16 9 C 0.52 6.42 8.03 -11.63 -0.09 6.32 16 10 O -0.50 -7.31 16.89 -12.70 -0.21 -7.52 16 11 C 0.52 6.73 7.73 -11.63 -0.09 6.64 16 12 O -0.50 -7.34 13.91 5.47 0.08 -7.27 16 13 N -0.63 -8.19 5.32 -10.30 -0.05 -8.24 16 14 C 0.09 1.44 6.30 -83.75 -0.53 0.91 16 15 C -0.13 -2.08 9.97 -39.38 -0.39 -2.47 16 16 C -0.11 -2.01 9.69 -39.61 -0.38 -2.40 16 17 C -0.03 -0.73 5.07 -104.58 -0.53 -1.26 16 18 C 0.05 1.17 5.10 -29.04 -0.15 1.02 16 19 C -0.51 -14.11 9.09 -34.44 -0.31 -14.42 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.11 -2.13 9.69 -39.62 -0.38 -2.51 16 28 C -0.11 -1.96 8.70 -39.38 -0.34 -2.30 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.22 6.56 -51.93 -0.34 -0.12 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.42 3.28 8.01 -40.82 -0.33 2.95 16 40 H 0.42 4.60 8.30 -40.82 -0.34 4.26 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.13 2.22 8.06 -52.49 -0.42 1.79 16 43 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 44 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 47 H 0.13 2.15 6.22 -52.49 -0.33 1.82 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -32.32 399.27 -8.48 -40.80 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.11 Total: 3.04 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.79 Total: -10.57 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.88 Total: -39.11 kcal Atomic # 8 Polarization: -15.99 SS G_CDS: -0.45 Total: -16.45 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.32 -8.48 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516187654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.268 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds