Wall clock time and date at job start Tue Mar 31 2020 17:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47307 * 2 1 4 4 H 1.08991 * 109.47047 * 55.00313 * 3 2 1 5 5 C 1.52998 * 109.47194 * 294.99910 * 3 2 1 6 6 C 1.53001 * 109.46791 * 175.00095 * 3 2 1 7 7 O 1.42908 * 109.46943 * 184.99893 * 6 3 2 8 8 N 1.41603 * 113.99897 * 180.02562 * 7 6 3 9 9 C 1.34775 * 119.99833 * 180.02562 * 8 7 6 10 10 O 1.21364 * 119.99760 * 359.97438 * 9 8 7 11 11 C 1.49348 * 120.00016 * 179.97438 * 9 8 7 12 12 O 1.21380 * 120.00063 * 359.97438 * 11 9 8 13 13 N 1.34775 * 120.00389 * 179.97438 * 11 9 8 14 14 C 1.39718 * 120.00713 * 175.38114 * 13 11 9 15 15 C 1.38929 * 120.07814 * 214.82095 * 14 13 11 16 16 C 1.38097 * 119.91936 * 179.76380 * 15 14 13 17 17 C 1.38296 * 120.07878 * 0.49203 * 16 15 14 18 18 C 1.50701 * 119.92320 * 179.76388 * 17 16 15 19 19 C 1.50694 * 109.47166 * 270.02158 * 18 17 16 20 20 H 1.07999 * 120.00103 * 359.97438 * 19 18 17 21 21 C 1.37884 * 120.00232 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99591 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00220 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47030 * 89.99672 * 23 21 19 25 25 H 1.48493 * 109.47237 * 209.99736 * 23 21 19 26 26 H 1.48503 * 109.47210 * 330.00169 * 23 21 19 27 27 C 1.38290 * 120.15217 * 359.78042 * 17 16 15 28 28 C 1.38094 * 120.07634 * 359.96309 * 27 17 16 29 29 H 1.09006 * 109.47057 * 300.00666 * 1 2 3 30 30 H 1.09001 * 109.46776 * 59.99556 * 1 2 3 31 31 H 1.08993 * 109.47589 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47399 * 239.99649 * 2 1 3 33 33 H 1.09001 * 109.47021 * 119.99951 * 2 1 3 34 34 H 1.08993 * 109.47137 * 180.02562 * 5 3 2 35 35 H 1.09004 * 109.47221 * 300.00352 * 5 3 2 36 36 H 1.09005 * 109.47167 * 59.99752 * 5 3 2 37 37 H 1.09005 * 109.47330 * 304.99627 * 6 3 2 38 38 H 1.08997 * 109.47167 * 65.00113 * 6 3 2 39 39 H 0.97005 * 119.99928 * 359.97438 * 8 7 6 40 40 H 0.97006 * 119.99336 * 355.38091 * 13 11 9 41 41 H 1.07992 * 120.03894 * 359.97438 * 15 14 13 42 42 H 1.07999 * 119.95939 * 180.25349 * 16 15 14 43 43 H 1.09002 * 109.47277 * 30.02379 * 18 17 16 44 44 H 1.09005 * 109.46903 * 150.01631 * 18 17 16 45 45 H 0.97002 * 119.99958 * 180.02562 * 22 21 19 46 46 H 1.07995 * 119.96050 * 179.97438 * 27 17 16 47 47 H 1.07995 * 120.03960 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 8 4.0317 2.7898 0.2428 8 7 5.4379 2.9030 0.3647 9 6 6.0083 4.1183 0.4832 10 8 5.3167 5.1156 0.4849 11 6 7.4914 4.2378 0.6123 12 8 8.1830 3.2403 0.6110 13 7 8.0619 5.4531 0.7303 14 6 9.4378 5.5609 0.9478 15 6 9.9387 6.5823 1.7453 16 6 11.2989 6.6829 1.9621 17 6 12.1629 5.7746 1.3782 18 6 13.6469 5.8908 1.6128 19 6 14.2558 6.7711 0.5520 20 1 13.6307 7.2028 -0.2157 21 6 15.6111 7.0245 0.5607 22 7 16.3724 6.4983 1.4952 23 14 16.3659 8.1150 -0.7547 24 1 16.3507 9.5272 -0.2955 25 1 17.7668 7.6911 -1.0052 26 1 15.5802 7.9939 -2.0090 27 6 11.6681 4.7600 0.5792 28 6 10.3087 4.6503 0.3624 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9991 3.1540 -1.3075 35 1 2.0699 1.5874 -2.1492 36 1 0.5490 2.1252 -1.3970 37 1 3.8571 0.8799 1.0113 38 1 4.0029 0.9834 -0.7597 39 1 5.9905 2.1058 0.3636 40 1 7.5171 6.2530 0.6641 41 1 9.2650 7.2947 2.1979 42 1 11.6886 7.4742 2.5853 43 1 13.8264 6.3283 2.5949 44 1 14.1005 4.9007 1.5678 45 1 17.3258 6.6769 1.5016 46 1 12.3457 4.0526 0.1244 47 1 9.9230 3.8580 -0.2619 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001516187654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:43 Heat of formation + Delta-G solvation = -72.950231 kcal Electronic energy + Delta-G solvation = -26945.628853 eV Core-core repulsion = 22901.437671 eV Total energy + Delta-G solvation = -4044.191182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15361 -40.51549 -39.47978 -38.95777 -37.04202 -36.46003 -35.01242 -33.43034 -32.31649 -31.81255 -30.71547 -28.82124 -27.74743 -26.30430 -24.68707 -24.20228 -23.86132 -22.29001 -21.55369 -20.95366 -20.13559 -19.20519 -18.48952 -18.11432 -17.73636 -17.44218 -16.83376 -16.75671 -16.13480 -15.95786 -15.84589 -15.60370 -15.45298 -14.88319 -14.71700 -14.60036 -14.50133 -14.31279 -13.96038 -13.70800 -13.31370 -13.24233 -13.20332 -12.97940 -12.93223 -12.70682 -12.60738 -12.43730 -12.08485 -12.05085 -11.87587 -11.66160 -11.61861 -11.51260 -11.47864 -11.15393 -10.83382 -10.58184 -10.24825 -9.78976 -9.00541 -8.17461 -6.31187 -0.09661 0.19324 0.55215 0.64797 1.42112 1.42647 1.54111 1.89819 1.95019 2.41563 2.92795 3.03311 3.13059 3.33699 3.74250 3.79715 4.02647 4.03067 4.12126 4.30180 4.32327 4.37466 4.50770 4.52128 4.58136 4.61658 4.64563 4.69448 4.78127 5.04223 5.08508 5.11110 5.15242 5.18658 5.22965 5.27195 5.36421 5.38674 5.39679 5.45767 5.49528 5.54327 5.63468 5.77056 6.05201 6.08100 6.13374 6.22892 6.60277 6.78042 6.81787 7.37474 8.91079 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.035701 B = 0.001579 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.112744 B =17729.011116 C =17832.700108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.077 0.923 5 C -0.150 4.150 6 C 0.024 3.976 7 O -0.152 6.152 8 N -0.558 5.558 9 C 0.530 3.470 10 O -0.526 6.526 11 C 0.524 3.476 12 O -0.516 6.516 13 N -0.620 5.620 14 C 0.106 3.894 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.066 4.066 18 C 0.055 3.945 19 C -0.528 4.528 20 H 0.056 0.944 21 C 0.006 3.994 22 N -0.930 5.930 23 Si 0.964 3.036 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.267 1.267 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.432 0.568 40 H 0.433 0.567 41 H 0.158 0.842 42 H 0.128 0.872 43 H 0.008 0.992 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.117 0.883 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.465 -11.657 -3.172 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.095 0.905 5 C -0.207 4.207 6 C -0.052 4.052 7 O -0.157 6.157 8 N -0.261 5.261 9 C 0.311 3.689 10 O -0.401 6.401 11 C 0.305 3.695 12 O -0.391 6.391 13 N -0.268 5.268 14 C 0.013 3.987 15 C -0.138 4.138 16 C -0.132 4.132 17 C -0.067 4.067 18 C 0.019 3.981 19 C -0.566 4.566 20 H 0.075 0.925 21 C -0.192 4.192 22 N -0.570 5.570 23 Si 0.789 3.211 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.191 1.191 27 C -0.137 4.137 28 C -0.135 4.135 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.276 0.724 40 H 0.273 0.727 41 H 0.176 0.824 42 H 0.146 0.854 43 H 0.026 0.974 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.135 0.865 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -31.498 -11.535 -3.114 33.688 hybrid contribution 0.910 0.217 -0.460 1.042 sum -30.588 -11.319 -3.573 32.810 Atomic orbital electron populations 1.21813 0.94877 1.02305 1.02183 1.21493 0.96704 0.93632 1.03181 1.21153 0.90626 0.98483 0.99754 0.90499 1.21888 1.02242 1.00093 0.96517 1.23532 0.96439 0.82157 1.03076 1.90606 0.99881 1.28849 1.96346 1.46910 0.97201 1.09118 1.72870 1.19712 0.87771 0.82935 0.78523 1.90800 1.63623 1.36685 1.48995 1.19639 0.87372 0.84197 0.78286 1.90811 1.63681 1.36763 1.47860 1.42801 1.06788 1.08994 1.68198 1.17550 0.81648 0.99151 1.00332 1.21062 0.95391 0.99164 0.98175 1.20983 0.92635 0.98978 1.00585 1.20492 0.96760 0.94169 0.95261 1.18116 0.87824 0.96002 0.96207 1.21399 0.93137 1.29930 1.12167 0.92549 1.25898 0.97719 0.97450 0.98171 1.70081 1.05907 1.45717 1.35292 0.85459 0.77511 0.78917 0.79254 1.19617 1.20668 1.19094 1.20963 0.94945 0.98668 0.99149 1.21179 0.92162 1.00044 1.00090 0.92755 0.92227 0.91840 0.90827 0.90905 0.93799 0.91994 0.91154 0.90076 0.90203 0.72400 0.72744 0.82410 0.85366 0.97406 0.97883 0.92615 0.86494 0.84423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 71.98 0.70 -0.20 16 2 C -0.11 -0.66 5.40 30.59 0.17 -0.49 16 3 C -0.08 -0.74 2.63 -10.79 -0.03 -0.77 16 4 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.15 -1.56 8.85 71.98 0.64 -0.93 16 6 C 0.02 0.25 5.61 71.98 0.40 0.66 16 7 O -0.15 -2.80 10.64 -21.40 -0.23 -3.03 16 8 N -0.56 -10.14 6.38 -174.57 -1.11 -11.26 16 9 C 0.53 12.00 8.03 87.24 0.70 12.70 16 10 O -0.53 -14.48 16.89 14.10 0.24 -14.24 16 11 C 0.52 12.52 7.73 87.24 0.67 13.20 16 12 O -0.52 -14.11 13.91 -3.34 -0.05 -14.15 16 13 N -0.62 -14.56 5.32 -304.84 -1.62 -16.18 16 14 C 0.11 3.12 6.30 38.22 0.24 3.36 16 15 C -0.12 -3.43 9.97 22.40 0.22 -3.21 16 16 C -0.11 -4.13 9.69 22.25 0.22 -3.92 16 17 C -0.07 -2.87 5.07 -19.84 -0.10 -2.97 16 18 C 0.06 2.93 5.10 29.10 0.15 3.08 16 19 C -0.53 -29.84 9.09 25.60 0.23 -29.61 16 20 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 21 C 0.01 0.33 5.46 84.66 0.46 0.79 16 22 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 23 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.12 -4.68 9.69 22.25 0.22 -4.46 16 28 C -0.12 -3.88 8.70 22.40 0.19 -3.68 16 29 H 0.05 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.06 0.35 6.56 -2.39 -0.02 0.33 16 31 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.04 0.64 7.82 -2.39 -0.02 0.62 16 35 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.07 0.60 6.57 -2.38 -0.02 0.59 16 37 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.43 5.81 8.01 -92.70 -0.74 5.06 16 40 H 0.43 8.18 8.30 -92.70 -0.77 7.41 16 41 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 42 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 43 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 44 H 0.00 0.16 8.08 -2.38 -0.02 0.14 16 45 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 47 H 0.14 4.40 6.22 -2.91 -0.02 4.38 16 Total: -1.00 -70.48 399.27 4.10 -66.38 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.52 Total: 18.37 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: 5.08 Total: -16.45 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -2.45 Total: -82.86 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.04 Total: -31.43 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -70.48 4.10 -66.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516187654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.572 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds