Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 H 1.09003 * 109.46522 * 306.53178 * 3 2 1 5 5 C 1.52994 * 109.47020 * 66.53155 * 3 2 1 6 6 C 1.53005 * 109.47004 * 185.41675 * 5 3 2 7 7 F 1.39906 * 109.47017 * 64.91462 * 6 5 3 8 8 F 1.39896 * 109.47411 * 184.91728 * 6 5 3 9 9 F 1.39901 * 109.47142 * 304.92282 * 6 5 3 10 10 C 1.50699 * 109.47176 * 186.53312 * 3 2 1 11 11 O 1.21279 * 120.00185 * 275.77661 * 10 3 2 12 12 N 1.34780 * 119.99763 * 95.77229 * 10 3 2 13 13 C 1.46507 * 119.99760 * 179.97438 * 12 10 3 14 14 C 1.52997 * 109.46803 * 180.02562 * 13 12 10 15 15 H 1.08999 * 115.52021 * 29.58735 * 14 13 12 16 16 C 1.53002 * 117.44125 * 244.23860 * 14 13 12 17 17 H 1.08997 * 119.53831 * 4.12220 * 16 14 13 18 18 C 1.57695 * 116.11092 * 161.64335 * 16 14 13 19 19 N 1.48141 * 104.67433 * 87.30750 * 18 16 14 20 20 C 1.36939 * 127.83638 * 139.77854 * 19 18 16 21 21 H 1.08006 * 120.00002 * 341.10921 * 20 19 18 22 22 C 1.38813 * 120.00209 * 161.11429 * 20 19 18 23 23 N 1.31615 * 119.99814 * 351.42311 * 22 20 19 24 24 Si 1.86795 * 120.00143 * 171.42365 * 22 20 19 25 25 H 1.48507 * 109.47132 * 359.97438 * 24 22 20 26 26 H 1.48509 * 109.47302 * 119.99689 * 24 22 20 27 27 H 1.48497 * 109.47608 * 239.99675 * 24 22 20 28 28 C 1.48139 * 104.32540 * 319.77336 * 19 18 16 29 29 C 1.53007 * 117.43961 * 175.00027 * 14 13 12 30 30 H 1.08994 * 119.53961 * 355.87891 * 29 14 13 31 31 H 1.08993 * 109.46851 * 298.42197 * 1 2 3 32 32 H 1.08997 * 109.47033 * 58.42594 * 1 2 3 33 33 H 1.09003 * 109.46737 * 178.42730 * 1 2 3 34 34 H 1.09005 * 109.47464 * 239.99848 * 2 1 3 35 35 H 1.09006 * 109.47309 * 119.99711 * 2 1 3 36 36 H 1.08996 * 109.47420 * 305.41178 * 5 3 2 37 37 H 1.09001 * 109.47102 * 65.42206 * 5 3 2 38 38 H 0.97001 * 120.00664 * 0.02562 * 12 10 3 39 39 H 1.08999 * 109.47040 * 300.00520 * 13 12 10 40 40 H 1.08999 * 109.46968 * 60.00160 * 13 12 10 41 41 H 1.09001 * 110.91997 * 328.22926 * 18 16 14 42 42 H 1.09004 * 109.83430 * 205.84489 * 18 16 14 43 43 H 0.97003 * 119.99797 * 180.02562 * 23 22 20 44 44 H 1.08999 * 110.40833 * 280.80015 * 28 19 18 45 45 H 1.09001 * 110.40786 * 158.37356 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5843 1.9889 -0.8258 5 6 1.6684 2.1148 1.3231 6 6 2.0578 3.5936 1.2709 7 9 1.2928 4.2431 0.2961 8 9 1.8218 4.1824 2.5177 9 9 3.4150 3.7074 0.9507 10 6 3.5383 1.4456 -0.1617 11 8 4.2531 1.3016 0.8075 12 7 4.0839 1.6084 -1.3833 13 6 5.5406 1.6120 -1.5404 14 6 5.8939 1.8129 -3.0154 15 1 5.1762 2.3931 -3.5953 16 6 6.6156 0.6685 -3.7298 17 1 6.7946 -0.2674 -3.2006 18 6 6.5704 0.6960 -5.3058 19 7 7.7280 1.5321 -5.7000 20 6 8.5948 1.3298 -6.7406 21 1 8.6757 0.3528 -7.1939 22 6 9.3697 2.3802 -7.2129 23 7 9.1536 3.6040 -6.7794 24 14 10.7189 2.0570 -8.4636 25 1 10.7583 0.6078 -8.7859 26 1 10.4438 2.8322 -9.7001 27 1 12.0276 2.4737 -7.8990 28 6 7.7351 2.6369 -4.7131 29 6 7.3743 1.9634 -3.3716 30 1 8.1183 1.9921 -2.5756 31 1 -0.3633 0.4891 0.9038 32 1 -0.3633 0.5381 -0.8755 33 1 -0.3633 -1.0273 -0.0282 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5942 2.0276 1.4859 37 1 2.2006 1.6277 2.1402 38 1 3.5123 1.7239 -2.1584 39 1 5.9676 2.4233 -0.9509 40 1 5.9455 0.6604 -1.1957 41 1 5.6412 1.1417 -5.6608 42 1 6.6814 -0.3155 -5.6967 43 1 9.6949 4.3381 -7.1097 44 1 6.9878 3.3858 -4.9756 45 1 8.7248 3.0900 -4.6569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570957961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -148.850837 kcal Electronic energy + Delta-G solvation = -29311.201022 eV Core-core repulsion = 24721.861802 eV Total energy + Delta-G solvation = -4589.339220 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.31567 -47.84045 -47.74702 -40.18330 -38.71432 -36.18039 -34.97122 -33.33987 -31.37143 -30.87687 -28.22759 -27.03623 -26.52402 -24.79174 -23.52686 -22.11058 -21.11040 -20.58172 -19.74754 -19.27967 -18.78940 -18.56998 -17.85825 -17.40399 -16.79391 -16.03865 -15.46784 -14.92812 -14.80575 -14.67936 -14.59802 -14.46031 -14.21905 -14.03969 -14.01147 -13.91364 -13.83733 -13.56868 -13.18058 -12.98257 -12.80856 -12.67408 -12.40646 -12.31363 -12.05329 -11.87915 -11.40618 -11.28308 -11.24361 -11.09658 -10.86261 -10.63200 -10.29148 -10.10254 -9.99533 -9.77734 -9.43271 -9.15318 -8.97028 -8.64171 -6.85535 -5.82999 -3.18358 2.45481 2.50164 2.96363 3.36213 3.42422 3.44888 3.50470 3.62333 3.80639 4.12948 4.31972 4.36602 4.44901 4.46549 4.72465 4.78987 4.87835 4.89633 5.04357 5.20812 5.27991 5.28982 5.38909 5.43615 5.49830 5.53994 5.59670 5.77012 5.77698 5.79504 5.91662 5.94854 6.22169 6.33079 6.53308 6.64844 6.68717 6.89246 7.33440 7.39283 7.51105 7.69949 8.08815 8.18985 9.08630 9.71436 10.49966 11.32012 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002242 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.687100 B =12487.650831 C =13117.715841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 C -0.111 4.111 4 H 0.102 0.898 5 C -0.154 4.154 6 C 0.447 3.553 7 F -0.186 7.186 8 F -0.185 7.185 9 F -0.171 7.171 10 C 0.513 3.487 11 O -0.535 6.535 12 N -0.718 5.718 13 C 0.155 3.845 14 C -0.153 4.153 15 H 0.103 0.897 16 C -0.172 4.172 17 H 0.107 0.893 18 C 0.156 3.844 19 N -0.594 5.594 20 C -0.229 4.229 21 H 0.076 0.924 22 C -0.004 4.004 23 N -0.913 5.913 24 Si 0.912 3.088 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.186 3.814 29 C -0.162 4.162 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.402 0.598 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.254 0.746 44 H 0.025 0.975 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.946 -4.481 16.596 26.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.147 4.147 3 C -0.133 4.133 4 H 0.120 0.880 5 C -0.192 4.192 6 C 0.393 3.607 7 F -0.167 7.167 8 F -0.166 7.166 9 F -0.152 7.152 10 C 0.298 3.702 11 O -0.412 6.412 12 N -0.369 5.369 13 C 0.032 3.968 14 C -0.172 4.172 15 H 0.121 0.879 16 C -0.192 4.192 17 H 0.125 0.875 18 C 0.029 3.971 19 N -0.317 5.317 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.201 4.201 23 N -0.559 5.559 24 Si 0.742 3.258 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.216 1.216 28 C 0.060 3.940 29 C -0.183 4.183 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.188 -4.429 17.087 26.072 hybrid contribution 0.525 0.326 -0.969 1.149 sum -18.662 -4.103 16.118 24.998 Atomic orbital electron populations 1.21865 0.94592 1.02555 1.02278 1.21418 0.96609 0.92678 1.03981 1.21385 0.93937 0.99926 0.98037 0.87991 1.22894 1.05965 0.88902 1.01477 1.20628 0.75343 0.91243 0.73496 1.93187 1.75710 1.84190 1.63639 1.93183 1.94274 1.86537 1.42651 1.93266 1.32898 1.96655 1.92430 1.20304 0.89916 0.76544 0.83393 1.90711 1.62875 1.49124 1.38520 1.46019 1.08480 1.73394 1.09030 1.20889 0.79083 1.01920 0.94929 1.22551 0.97110 1.03565 0.94004 0.87926 1.24720 1.04779 0.92330 0.97342 0.87549 1.21721 0.91105 0.95440 0.88839 1.45125 1.28924 1.26496 1.31134 1.19014 1.14535 0.94608 1.07592 0.90662 1.24962 1.00919 0.94946 0.99308 1.69920 1.41061 0.98407 1.46482 0.86054 0.81538 0.77540 0.80644 1.20320 1.21638 1.21575 1.21014 1.01114 0.89464 0.82360 1.24170 0.91354 1.01431 1.01344 0.88045 0.92351 0.92076 0.91854 0.90409 0.90528 0.86320 0.85898 0.76388 0.91083 0.91447 0.95572 0.93357 0.93569 0.95681 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.66 37.16 0.36 -0.28 16 2 C -0.11 -0.63 5.37 -26.73 -0.14 -0.77 16 3 C -0.11 -0.82 2.14 -91.77 -0.20 -1.01 16 4 H 0.10 0.61 7.76 -51.93 -0.40 0.20 16 5 C -0.15 -1.08 4.52 -26.73 -0.12 -1.20 16 6 C 0.45 4.37 3.16 37.16 0.12 4.49 16 7 F -0.19 -1.81 16.90 2.25 0.04 -1.77 16 8 F -0.18 -1.90 17.32 2.25 0.04 -1.86 16 9 F -0.17 -2.21 14.17 2.25 0.03 -2.18 16 10 C 0.51 5.80 4.93 -10.98 -0.05 5.75 16 11 O -0.54 -7.98 15.20 5.56 0.08 -7.90 16 12 N -0.72 -7.93 5.56 -60.29 -0.33 -8.27 16 13 C 0.15 2.07 5.95 -4.04 -0.02 2.05 16 14 C -0.15 -2.31 5.34 -90.62 -0.48 -2.79 16 15 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 16 C -0.17 -2.95 7.03 -87.38 -0.61 -3.56 16 17 H 0.11 1.68 8.12 -51.93 -0.42 1.26 16 18 C 0.16 3.19 7.10 -0.57 0.00 3.18 16 19 N -0.59 -15.09 3.37 -166.74 -0.56 -15.65 16 20 C -0.23 -6.36 10.34 -15.06 -0.16 -6.52 16 21 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 22 C 0.00 -0.11 5.39 -17.43 -0.09 -0.20 16 23 N -0.91 -26.69 11.03 55.49 0.61 -26.07 16 24 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.19 4.43 5.63 -2.41 -0.01 4.42 16 29 C -0.16 -3.04 6.77 -89.21 -0.60 -3.65 16 30 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.06 0.20 6.58 -51.93 -0.34 -0.15 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.12 0.49 6.42 -51.93 -0.33 0.16 16 37 H 0.12 0.91 7.67 -51.93 -0.40 0.52 16 38 H 0.40 3.53 8.37 -40.82 -0.34 3.19 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.94 7.94 -51.93 -0.41 0.52 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 2.23 6.74 -51.93 -0.35 1.88 16 LS Contribution 374.84 15.07 5.65 5.65 Total: -1.00 -32.51 374.84 -8.27 -40.78 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.77 Total: 0.57 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.03 Total: -0.09 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.28 Total: -49.99 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.51 -8.27 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570957961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.069 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds