Wall clock time and date at job start Tue Mar 31 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47096 * 2 1 4 4 H 1.09003 * 109.46522 * 306.53178 * 3 2 1 5 5 C 1.52994 * 109.47020 * 66.53155 * 3 2 1 6 6 C 1.53005 * 109.47004 * 185.41675 * 5 3 2 7 7 F 1.39906 * 109.47017 * 64.91462 * 6 5 3 8 8 F 1.39896 * 109.47411 * 184.91728 * 6 5 3 9 9 F 1.39901 * 109.47142 * 304.92282 * 6 5 3 10 10 C 1.50699 * 109.47176 * 186.53312 * 3 2 1 11 11 O 1.21279 * 120.00185 * 275.77661 * 10 3 2 12 12 N 1.34780 * 119.99763 * 95.77229 * 10 3 2 13 13 C 1.46507 * 119.99760 * 179.97438 * 12 10 3 14 14 C 1.52997 * 109.46803 * 180.02562 * 13 12 10 15 15 H 1.08999 * 115.52021 * 29.58735 * 14 13 12 16 16 C 1.53002 * 117.44125 * 244.23860 * 14 13 12 17 17 H 1.08997 * 119.53831 * 4.12220 * 16 14 13 18 18 C 1.57695 * 116.11092 * 161.64335 * 16 14 13 19 19 N 1.48141 * 104.67433 * 87.30750 * 18 16 14 20 20 C 1.36939 * 127.83638 * 139.77854 * 19 18 16 21 21 H 1.08006 * 120.00002 * 341.10921 * 20 19 18 22 22 C 1.38813 * 120.00209 * 161.11429 * 20 19 18 23 23 N 1.31615 * 119.99814 * 351.42311 * 22 20 19 24 24 Si 1.86795 * 120.00143 * 171.42365 * 22 20 19 25 25 H 1.48507 * 109.47132 * 359.97438 * 24 22 20 26 26 H 1.48509 * 109.47302 * 119.99689 * 24 22 20 27 27 H 1.48497 * 109.47608 * 239.99675 * 24 22 20 28 28 C 1.48139 * 104.32540 * 319.77336 * 19 18 16 29 29 C 1.53007 * 117.43961 * 175.00027 * 14 13 12 30 30 H 1.08994 * 119.53961 * 355.87891 * 29 14 13 31 31 H 1.08993 * 109.46851 * 298.42197 * 1 2 3 32 32 H 1.08997 * 109.47033 * 58.42594 * 1 2 3 33 33 H 1.09003 * 109.46737 * 178.42730 * 1 2 3 34 34 H 1.09005 * 109.47464 * 239.99848 * 2 1 3 35 35 H 1.09006 * 109.47309 * 119.99711 * 2 1 3 36 36 H 1.08996 * 109.47420 * 305.41178 * 5 3 2 37 37 H 1.09001 * 109.47102 * 65.42206 * 5 3 2 38 38 H 0.97001 * 120.00664 * 0.02562 * 12 10 3 39 39 H 1.08999 * 109.47040 * 300.00520 * 13 12 10 40 40 H 1.08999 * 109.46968 * 60.00160 * 13 12 10 41 41 H 1.09001 * 110.91997 * 328.22926 * 18 16 14 42 42 H 1.09004 * 109.83430 * 205.84489 * 18 16 14 43 43 H 0.97003 * 119.99797 * 180.02562 * 23 22 20 44 44 H 1.08999 * 110.40833 * 280.80015 * 28 19 18 45 45 H 1.09001 * 110.40786 * 158.37356 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5843 1.9889 -0.8258 5 6 1.6684 2.1148 1.3231 6 6 2.0578 3.5936 1.2709 7 9 1.2928 4.2431 0.2961 8 9 1.8218 4.1824 2.5177 9 9 3.4150 3.7074 0.9507 10 6 3.5383 1.4456 -0.1617 11 8 4.2531 1.3016 0.8075 12 7 4.0839 1.6084 -1.3833 13 6 5.5406 1.6120 -1.5404 14 6 5.8939 1.8129 -3.0154 15 1 5.1762 2.3931 -3.5953 16 6 6.6156 0.6685 -3.7298 17 1 6.7946 -0.2674 -3.2006 18 6 6.5704 0.6960 -5.3058 19 7 7.7280 1.5321 -5.7000 20 6 8.5948 1.3298 -6.7406 21 1 8.6757 0.3528 -7.1939 22 6 9.3697 2.3802 -7.2129 23 7 9.1536 3.6040 -6.7794 24 14 10.7189 2.0570 -8.4636 25 1 10.7583 0.6078 -8.7859 26 1 10.4438 2.8322 -9.7001 27 1 12.0276 2.4737 -7.8990 28 6 7.7351 2.6369 -4.7131 29 6 7.3743 1.9634 -3.3716 30 1 8.1183 1.9921 -2.5756 31 1 -0.3633 0.4891 0.9038 32 1 -0.3633 0.5381 -0.8755 33 1 -0.3633 -1.0273 -0.0282 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.5942 2.0276 1.4859 37 1 2.2006 1.6277 2.1402 38 1 3.5123 1.7239 -2.1584 39 1 5.9676 2.4233 -0.9509 40 1 5.9455 0.6604 -1.1957 41 1 5.6412 1.1417 -5.6608 42 1 6.6814 -0.3155 -5.6967 43 1 9.6949 4.3381 -7.1097 44 1 6.9878 3.3858 -4.9756 45 1 8.7248 3.0900 -4.6569 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570957961.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:50 Heat of formation + Delta-G solvation = -168.525342 kcal Electronic energy + Delta-G solvation = -29312.054172 eV Core-core repulsion = 24721.861802 eV Total energy + Delta-G solvation = -4590.192371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.10415 -48.61695 -48.58048 -41.10894 -40.19561 -36.87350 -36.23004 -34.96870 -32.72210 -31.86051 -29.38570 -28.73858 -27.71752 -26.27944 -24.18213 -23.07401 -22.46916 -21.80027 -20.90867 -20.73640 -19.58427 -19.34163 -18.83027 -18.59641 -18.18989 -17.13171 -16.70588 -16.35887 -16.01343 -15.55774 -15.48357 -15.24915 -15.21497 -15.10197 -15.01132 -14.76370 -14.72712 -14.64020 -14.55587 -14.33878 -13.92423 -13.71670 -13.36752 -13.17995 -12.96822 -12.88086 -12.79535 -12.75348 -12.63570 -12.28527 -11.96167 -11.89277 -11.87530 -11.79562 -11.64535 -11.04693 -10.85172 -10.71368 -10.51333 -10.02935 -8.88647 -7.94318 -5.31573 1.45519 1.46492 1.57408 1.60946 1.80358 2.08659 2.46463 2.74679 2.82347 2.95221 3.10398 3.25110 3.57121 3.64268 3.70563 3.75454 3.86451 3.97282 4.15547 4.22365 4.26310 4.32203 4.33110 4.51092 4.55003 4.57941 4.66314 4.73013 4.76379 4.91897 4.92531 5.01615 5.19448 5.21883 5.25401 5.33831 5.43946 5.47663 5.49307 5.52331 5.63183 6.16935 6.54229 6.99593 7.23785 7.66830 8.46628 9.20419 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021858 B = 0.002242 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.687100 B =12487.650831 C =13117.715841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.105 4.105 4 H 0.121 0.879 5 C -0.147 4.147 6 C 0.440 3.560 7 F -0.185 7.185 8 F -0.190 7.190 9 F -0.194 7.194 10 C 0.510 3.490 11 O -0.574 6.574 12 N -0.714 5.714 13 C 0.165 3.835 14 C -0.113 4.113 15 H 0.108 0.892 16 C -0.154 4.154 17 H 0.130 0.870 18 C 0.149 3.851 19 N -0.620 5.620 20 C -0.242 4.242 21 H 0.080 0.920 22 C -0.062 4.062 23 N -0.946 5.946 24 Si 0.980 3.020 25 H -0.263 1.263 26 H -0.290 1.290 27 H -0.292 1.292 28 C 0.193 3.807 29 C -0.181 4.181 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.415 0.585 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.056 0.944 43 H 0.250 0.750 44 H 0.003 0.997 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.037 -6.110 17.156 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.142 4.142 3 C -0.126 4.126 4 H 0.139 0.861 5 C -0.185 4.185 6 C 0.387 3.613 7 F -0.167 7.167 8 F -0.172 7.172 9 F -0.175 7.175 10 C 0.297 3.703 11 O -0.454 6.454 12 N -0.366 5.366 13 C 0.041 3.959 14 C -0.132 4.132 15 H 0.126 0.874 16 C -0.174 4.174 17 H 0.148 0.852 18 C 0.024 3.976 19 N -0.344 5.344 20 C -0.370 4.370 21 H 0.098 0.902 22 C -0.256 4.256 23 N -0.594 5.594 24 Si 0.807 3.193 25 H -0.188 1.188 26 H -0.217 1.217 27 H -0.219 1.219 28 C 0.067 3.933 29 C -0.202 4.202 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.137 0.863 38 H 0.251 0.749 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.021 0.979 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.326 -6.085 17.643 28.339 hybrid contribution 1.120 0.850 -1.124 1.800 sum -20.206 -5.236 16.519 26.619 Atomic orbital electron populations 1.21867 0.92963 1.03139 1.03115 1.21409 0.97873 0.91200 1.03734 1.21446 0.90807 1.01424 0.98934 0.86070 1.22986 1.07996 0.86419 1.01130 1.21109 0.74352 0.92693 0.73190 1.93184 1.75474 1.84428 1.63614 1.93169 1.94192 1.86831 1.42986 1.93221 1.34845 1.96843 1.92617 1.21015 0.91549 0.75196 0.82562 1.90696 1.64196 1.50777 1.39686 1.45937 1.07538 1.73253 1.09863 1.20617 0.80752 1.01575 0.92956 1.22434 0.94509 1.01273 0.94995 0.87390 1.24649 1.04414 0.93074 0.95236 0.85182 1.21887 0.89574 0.94994 0.91181 1.45439 1.30308 1.27439 1.31206 1.19398 1.14869 0.94815 1.07967 0.90222 1.25809 1.03379 0.94788 1.01621 1.70109 1.42142 0.99156 1.47980 0.85005 0.78285 0.77992 0.77973 1.18765 1.21710 1.21854 1.20728 0.98336 0.89262 0.84968 1.23857 0.94272 1.02615 0.99442 0.87271 0.91316 0.91455 0.91458 0.90416 0.91148 0.82860 0.86344 0.74867 0.92184 0.91316 0.95071 0.92553 0.94128 0.97940 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.66 71.98 0.70 -0.03 16 2 C -0.10 -0.90 5.37 30.60 0.16 -0.74 16 3 C -0.10 -1.26 2.14 -11.54 -0.02 -1.28 16 4 H 0.12 1.02 7.76 -2.39 -0.02 1.00 16 5 C -0.15 -1.70 4.52 30.59 0.14 -1.57 16 6 C 0.44 7.96 3.16 71.98 0.23 8.18 16 7 F -0.19 -3.26 16.90 44.97 0.76 -2.50 16 8 F -0.19 -3.71 17.32 44.97 0.78 -2.93 16 9 F -0.19 -4.89 14.17 44.97 0.64 -4.26 16 10 C 0.51 10.61 4.93 87.66 0.43 11.04 16 11 O -0.57 -16.57 15.20 -3.03 -0.05 -16.62 16 12 N -0.71 -14.21 5.56 -463.05 -2.57 -16.78 16 13 C 0.17 4.11 5.95 86.38 0.51 4.62 16 14 C -0.11 -3.21 5.34 -10.79 -0.06 -3.26 16 15 H 0.11 3.02 8.04 -2.39 -0.02 3.00 16 16 C -0.15 -4.98 7.03 -8.69 -0.06 -5.05 16 17 H 0.13 3.67 8.12 -2.39 -0.02 3.65 16 18 C 0.15 5.95 7.10 87.73 0.62 6.57 16 19 N -0.62 -31.94 3.37 -681.43 -2.30 -34.24 16 20 C -0.24 -13.57 10.34 84.03 0.87 -12.70 16 21 H 0.08 4.28 7.84 -2.91 -0.02 4.25 16 22 C -0.06 -3.54 5.39 84.86 0.46 -3.08 16 23 N -0.95 -57.29 11.03 21.65 0.24 -57.05 16 24 Si 0.98 45.56 29.56 68.60 2.03 47.59 16 25 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 27 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 28 C 0.19 9.49 5.63 86.54 0.49 9.98 16 29 C -0.18 -6.74 6.77 -9.88 -0.07 -6.81 16 30 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.07 0.19 6.58 -2.39 -0.02 0.17 16 32 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.15 0.69 6.42 -2.39 -0.02 0.67 16 37 H 0.12 1.55 7.67 -2.39 -0.02 1.53 16 38 H 0.41 6.10 8.37 -92.71 -0.78 5.33 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.75 7.94 -2.39 -0.02 1.73 16 41 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.04 2.50 6.74 -2.39 -0.02 2.48 16 Total: -1.00 -72.87 374.84 4.16 -68.71 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.23 Total: 12.19 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.40 Total: 5.88 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.63 Total: -108.08 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.05 Total: -16.62 kcal Atomic # 9 Polarization: -11.86 SS G_CDS: 2.18 Total: -9.68 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -72.87 4.16 -68.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570957961.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.818 kcal (2) G-P(sol) polarization free energy of solvation -72.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds