Wall clock time and date at job start Tue Mar 31 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46996 * 2 1 4 4 H 1.09000 * 109.47486 * 57.06723 * 3 2 1 5 5 C 1.50699 * 109.47124 * 177.06921 * 3 2 1 6 6 O 1.21291 * 120.00350 * 101.89608 * 5 3 2 7 7 N 1.34776 * 119.99793 * 281.89374 * 5 3 2 8 8 C 1.39930 * 120.00330 * 185.19652 * 7 5 3 9 9 C 1.38876 * 120.06656 * 325.67107 * 8 7 5 10 10 C 1.38114 * 119.92849 * 179.78668 * 9 8 7 11 11 C 1.38284 * 120.06790 * 0.48999 * 10 9 8 12 12 C 1.50701 * 119.92583 * 179.76336 * 11 10 9 13 13 C 1.38274 * 120.14153 * 359.74486 * 11 10 9 14 14 C 1.38119 * 120.07331 * 0.02562 * 13 11 10 15 15 N 1.46496 * 109.47120 * 297.06407 * 3 2 1 16 16 C 1.36941 * 120.00242 * 305.39543 * 15 3 2 17 17 H 1.07994 * 119.99714 * 37.19244 * 16 15 3 18 18 C 1.38808 * 120.00127 * 217.19484 * 16 15 3 19 19 N 1.31615 * 120.00179 * 201.63115 * 18 16 15 20 20 Si 1.86804 * 120.00084 * 21.90533 * 18 16 15 21 21 H 1.48499 * 109.46992 * 264.67747 * 20 18 16 22 22 H 1.48500 * 109.46930 * 24.67269 * 20 18 16 23 23 H 1.48494 * 109.47420 * 144.67406 * 20 18 16 24 24 C 1.46506 * 119.99965 * 125.39347 * 15 3 2 25 25 C 1.53005 * 109.47083 * 270.00192 * 24 15 3 26 26 C 1.50698 * 109.47028 * 180.02562 * 25 24 15 27 27 O 1.20821 * 120.00037 * 359.97438 * 26 25 24 28 28 O 1.34227 * 119.99546 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.47586 * 300.00617 * 1 2 3 30 30 H 1.09002 * 109.47113 * 60.00021 * 1 2 3 31 31 H 1.09001 * 109.47325 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47486 * 239.99790 * 2 1 3 33 33 H 1.09006 * 109.46972 * 119.99239 * 2 1 3 34 34 H 0.97000 * 120.00566 * 5.20221 * 7 5 3 35 35 H 1.08005 * 120.03765 * 0.02706 * 9 8 7 36 36 H 1.08002 * 119.96362 * 180.23065 * 10 9 8 37 37 H 1.08997 * 109.46951 * 269.97660 * 12 11 10 38 38 H 1.08992 * 109.47159 * 29.98211 * 12 11 10 39 39 H 1.09009 * 109.46694 * 149.98077 * 12 11 10 40 40 H 1.08005 * 119.96626 * 179.97438 * 13 11 10 41 41 H 1.08001 * 120.03640 * 180.02562 * 14 13 11 42 42 H 0.97002 * 119.99789 * 0.26962 * 19 18 16 43 43 H 1.08993 * 109.47082 * 29.99975 * 24 15 3 44 44 H 1.09002 * 109.46882 * 150.00590 * 24 15 3 45 45 H 1.09006 * 109.46755 * 300.00016 * 25 24 15 46 46 H 1.08998 * 109.47022 * 59.99678 * 25 24 15 47 47 H 0.96703 * 116.99915 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6343 1.9713 0.8625 5 6 3.5452 1.4431 0.0726 6 8 4.2006 1.6424 -0.9283 7 7 4.1631 1.2224 1.2499 8 6 5.5553 1.3302 1.3405 9 6 6.3532 0.9588 0.2663 10 6 7.7269 1.0706 0.3572 11 6 8.3082 1.5422 1.5199 12 6 9.8076 1.6579 1.6175 13 6 7.5166 1.9083 2.5929 14 6 6.1421 1.8033 2.5067 15 7 1.6102 2.1123 -1.2299 16 6 1.9069 1.5626 -2.4486 17 1 1.8838 0.4907 -2.5774 18 6 2.2374 2.3833 -3.5182 19 7 2.1082 1.9414 -4.7512 20 14 2.8728 4.1122 -3.2075 21 1 1.7451 5.0753 -3.2843 22 1 3.4890 4.1780 -1.8580 23 1 3.8895 4.4577 -4.2332 24 6 0.8630 3.3703 -1.1562 25 6 -0.6363 3.0704 -1.0994 26 6 -1.4050 4.3644 -1.0242 27 8 -0.8143 5.4184 -1.0163 28 8 -2.7458 4.3460 -0.9650 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.6428 0.9886 2.0345 35 1 5.9000 0.5866 -0.6407 36 1 8.3478 0.7855 -0.4792 37 1 10.2193 0.7263 2.0055 38 1 10.2219 1.8544 0.6287 39 1 10.0658 2.4768 2.2890 40 1 7.9737 2.2758 3.4999 41 1 5.5244 2.0897 3.3450 42 1 1.7783 1.0435 -4.9125 43 1 1.1584 3.9164 -0.2604 44 1 1.0796 3.9738 -2.0377 45 1 -0.9317 2.5242 -1.9953 46 1 -0.8530 2.4669 -0.2180 47 1 -3.1949 5.2011 -0.9175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594735340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:07 Heat of formation + Delta-G solvation = -80.249390 kcal Electronic energy + Delta-G solvation = -29697.747874 eV Core-core repulsion = 25653.240177 eV Total energy + Delta-G solvation = -4044.507698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.18643 -39.89478 -38.50788 -36.56415 -35.79293 -34.52216 -33.12159 -31.84986 -31.28130 -30.74813 -29.97491 -27.29674 -25.62261 -24.58689 -22.79910 -22.43646 -21.86172 -20.83041 -20.49190 -19.37701 -17.88343 -17.59792 -16.99108 -16.53139 -16.09192 -15.83014 -15.32962 -15.13966 -14.90466 -14.49363 -14.21177 -13.87886 -13.68032 -13.46514 -13.33888 -13.20598 -13.10758 -12.89251 -12.64237 -12.23205 -12.08838 -11.97096 -11.73432 -11.67933 -11.44803 -11.36892 -11.27323 -10.98506 -10.95397 -10.55869 -10.40993 -10.20434 -10.04923 -9.79088 -9.55607 -9.24383 -8.90402 -8.68360 -8.39283 -7.71636 -7.11502 -6.23666 -3.40947 1.47044 1.59585 2.54208 3.24149 3.32295 3.50827 3.54510 3.70690 3.85225 4.00146 4.66868 4.80323 4.91763 4.99894 5.17922 5.22288 5.36511 5.37103 5.43497 5.50939 5.55657 5.56856 5.57447 5.60087 5.75114 5.79231 5.89395 5.91608 5.97110 6.01959 6.06365 6.18823 6.23534 6.31515 6.43524 6.48922 6.60425 6.62461 6.72224 6.74455 6.76901 6.79453 6.83945 7.32453 7.78693 8.05863 8.18615 8.48177 8.84578 9.01182 9.52288 10.11811 11.13957 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003627 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.237691 B = 7718.520919 C = 8224.586004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C 0.158 3.842 4 H 0.074 0.926 5 C 0.483 3.517 6 O -0.471 6.471 7 N -0.691 5.691 8 C 0.155 3.845 9 C -0.120 4.120 10 C -0.101 4.101 11 C -0.117 4.117 12 C -0.108 4.108 13 C -0.105 4.105 14 C -0.154 4.154 15 N -0.571 5.571 16 C -0.335 4.335 17 H 0.068 0.932 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 1.053 2.947 21 H -0.294 1.294 22 H -0.280 1.280 23 H -0.302 1.302 24 C 0.150 3.850 25 C -0.132 4.132 26 C 0.478 3.522 27 O -0.521 6.521 28 O -0.524 6.524 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.402 0.598 35 H 0.143 0.857 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.264 0.736 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.112 0.888 46 H 0.099 0.901 47 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.406 -2.232 16.457 16.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.046 3.954 4 H 0.092 0.908 5 C 0.268 3.732 6 O -0.340 6.340 7 N -0.339 5.339 8 C 0.060 3.940 9 C -0.141 4.141 10 C -0.120 4.120 11 C -0.118 4.118 12 C -0.165 4.165 13 C -0.123 4.123 14 C -0.175 4.175 15 N -0.291 5.291 16 C -0.463 4.463 17 H 0.086 0.914 18 C -0.192 4.192 19 N -0.548 5.548 20 Si 0.885 3.115 21 H -0.223 1.223 22 H -0.206 1.206 23 H -0.230 1.230 24 C 0.024 3.976 25 C -0.173 4.173 26 C 0.320 3.680 27 O -0.409 6.409 28 O -0.335 6.335 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.236 0.764 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.131 0.869 46 H 0.117 0.883 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 2.714 -0.797 14.833 15.100 hybrid contribution -0.980 -0.810 1.245 1.780 sum 1.734 -1.606 16.078 16.251 Atomic orbital electron populations 1.21737 0.95376 1.00696 1.02188 1.21725 0.96691 0.96049 1.01583 1.20619 0.87598 0.95314 0.91888 0.90839 1.22842 0.92722 0.75653 0.81997 1.90712 1.66159 1.43147 1.33933 1.44252 1.04632 1.71151 1.13851 1.17914 0.83767 0.97313 0.95010 1.21449 0.93052 0.99956 0.99602 1.20961 0.94505 0.99401 0.97137 1.19823 0.95832 1.01794 0.94373 1.20711 0.91717 1.01695 1.02359 1.20713 0.92853 1.00657 0.98113 1.20856 0.95232 1.03372 0.98010 1.44099 1.58586 1.24768 1.01633 1.19865 1.47695 0.93274 0.85469 0.91426 1.26111 0.95478 1.05080 0.92499 1.70928 1.44728 1.19167 1.20018 0.83905 0.76248 0.75637 0.75663 1.22324 1.20604 1.22983 1.21044 0.87061 0.88322 1.01139 1.22351 0.97394 0.91799 1.05711 1.24109 0.80078 0.92839 0.70954 1.90696 1.70019 1.34094 1.46068 1.84609 1.22488 1.40630 1.85787 0.93828 0.90710 0.93724 0.90716 0.93108 0.76374 0.83938 0.86125 0.91687 0.91804 0.91976 0.86301 0.86166 0.92562 0.93220 0.91455 0.86943 0.88299 0.74151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.95 37.16 0.33 -1.64 16 2 C -0.12 -1.88 5.21 -26.73 -0.14 -2.01 16 3 C 0.16 2.78 2.56 -69.09 -0.18 2.60 16 4 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 5 C 0.48 9.27 6.90 -10.99 -0.08 9.19 16 6 O -0.47 -11.37 12.58 5.55 0.07 -11.30 16 7 N -0.69 -10.41 5.34 -9.86 -0.05 -10.47 16 8 C 0.16 2.44 6.32 -83.69 -0.53 1.92 16 9 C -0.12 -2.07 8.71 -39.39 -0.34 -2.41 16 10 C -0.10 -1.49 9.69 -39.61 -0.38 -1.88 16 11 C -0.12 -1.50 5.88 -104.59 -0.62 -2.12 16 12 C -0.11 -1.04 10.01 36.01 0.36 -0.68 16 13 C -0.10 -1.28 9.69 -39.61 -0.38 -1.67 16 14 C -0.15 -2.02 9.97 -39.39 -0.39 -2.41 16 15 N -0.57 -12.32 1.27 -166.98 -0.21 -12.53 16 16 C -0.33 -8.70 7.73 -15.06 -0.12 -8.81 16 17 H 0.07 1.89 6.74 -52.49 -0.35 1.54 16 18 C 0.01 0.35 5.31 -17.43 -0.09 0.26 16 19 N -0.91 -27.89 13.71 55.49 0.76 -27.13 16 20 Si 1.05 28.29 25.33 -169.99 -4.31 23.98 16 21 H -0.29 -7.67 6.67 56.52 0.38 -7.29 16 22 H -0.28 -7.52 7.11 56.52 0.40 -7.12 16 23 H -0.30 -8.37 7.11 56.52 0.40 -7.97 16 24 C 0.15 3.11 3.74 -4.04 -0.02 3.10 16 25 C -0.13 -2.23 5.06 -27.88 -0.14 -2.38 16 26 C 0.48 7.86 8.33 36.00 0.30 8.16 16 27 O -0.52 -10.22 16.74 -18.75 -0.31 -10.54 16 28 O -0.52 -6.71 13.42 -39.25 -0.53 -7.24 16 29 H 0.04 0.51 7.97 -51.93 -0.41 0.10 16 30 H 0.07 1.20 6.14 -51.93 -0.32 0.88 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.40 6.70 -51.93 -0.35 1.05 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 4.47 8.82 -40.82 -0.36 4.11 16 35 H 0.14 2.82 6.15 -52.48 -0.32 2.50 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.06 0.52 8.08 -51.92 -0.42 0.10 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 43 H 0.05 0.96 7.93 -51.93 -0.41 0.55 16 44 H 0.07 1.62 3.14 -51.93 -0.16 1.46 16 45 H 0.11 2.02 8.13 -51.93 -0.42 1.59 16 46 H 0.10 1.40 6.68 -51.93 -0.35 1.06 16 47 H 0.40 3.30 9.10 45.56 0.41 3.72 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -35.09 382.16 -7.24 -42.33 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.01 Total: 7.90 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -2.41 Total: -0.77 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: 0.50 Total: -50.13 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.77 Total: -29.08 kcal Atomic # 14 Polarization: 28.29 SS G_CDS: -4.31 Total: 23.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.09 -7.24 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594735340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.919 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds