Wall clock time and date at job start Tue Mar 31 2020 18:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46996 * 2 1 4 4 H 1.09000 * 109.47486 * 57.06723 * 3 2 1 5 5 C 1.50699 * 109.47124 * 177.06921 * 3 2 1 6 6 O 1.21291 * 120.00350 * 101.89608 * 5 3 2 7 7 N 1.34776 * 119.99793 * 281.89374 * 5 3 2 8 8 C 1.39930 * 120.00330 * 185.19652 * 7 5 3 9 9 C 1.38876 * 120.06656 * 325.67107 * 8 7 5 10 10 C 1.38114 * 119.92849 * 179.78668 * 9 8 7 11 11 C 1.38284 * 120.06790 * 0.48999 * 10 9 8 12 12 C 1.50701 * 119.92583 * 179.76336 * 11 10 9 13 13 C 1.38274 * 120.14153 * 359.74486 * 11 10 9 14 14 C 1.38119 * 120.07331 * 0.02562 * 13 11 10 15 15 N 1.46496 * 109.47120 * 297.06407 * 3 2 1 16 16 C 1.36941 * 120.00242 * 305.39543 * 15 3 2 17 17 H 1.07994 * 119.99714 * 37.19244 * 16 15 3 18 18 C 1.38808 * 120.00127 * 217.19484 * 16 15 3 19 19 N 1.31615 * 120.00179 * 201.63115 * 18 16 15 20 20 Si 1.86804 * 120.00084 * 21.90533 * 18 16 15 21 21 H 1.48499 * 109.46992 * 264.67747 * 20 18 16 22 22 H 1.48500 * 109.46930 * 24.67269 * 20 18 16 23 23 H 1.48494 * 109.47420 * 144.67406 * 20 18 16 24 24 C 1.46506 * 119.99965 * 125.39347 * 15 3 2 25 25 C 1.53005 * 109.47083 * 270.00192 * 24 15 3 26 26 C 1.50698 * 109.47028 * 180.02562 * 25 24 15 27 27 O 1.20821 * 120.00037 * 359.97438 * 26 25 24 28 28 O 1.34227 * 119.99546 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.47586 * 300.00617 * 1 2 3 30 30 H 1.09002 * 109.47113 * 60.00021 * 1 2 3 31 31 H 1.09001 * 109.47325 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47486 * 239.99790 * 2 1 3 33 33 H 1.09006 * 109.46972 * 119.99239 * 2 1 3 34 34 H 0.97000 * 120.00566 * 5.20221 * 7 5 3 35 35 H 1.08005 * 120.03765 * 0.02706 * 9 8 7 36 36 H 1.08002 * 119.96362 * 180.23065 * 10 9 8 37 37 H 1.08997 * 109.46951 * 269.97660 * 12 11 10 38 38 H 1.08992 * 109.47159 * 29.98211 * 12 11 10 39 39 H 1.09009 * 109.46694 * 149.98077 * 12 11 10 40 40 H 1.08005 * 119.96626 * 179.97438 * 13 11 10 41 41 H 1.08001 * 120.03640 * 180.02562 * 14 13 11 42 42 H 0.97002 * 119.99789 * 0.26962 * 19 18 16 43 43 H 1.08993 * 109.47082 * 29.99975 * 24 15 3 44 44 H 1.09002 * 109.46882 * 150.00590 * 24 15 3 45 45 H 1.09006 * 109.46755 * 300.00016 * 25 24 15 46 46 H 1.08998 * 109.47022 * 59.99678 * 25 24 15 47 47 H 0.96703 * 116.99915 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6343 1.9713 0.8625 5 6 3.5452 1.4431 0.0726 6 8 4.2006 1.6424 -0.9283 7 7 4.1631 1.2224 1.2499 8 6 5.5553 1.3302 1.3405 9 6 6.3532 0.9588 0.2663 10 6 7.7269 1.0706 0.3572 11 6 8.3082 1.5422 1.5199 12 6 9.8076 1.6579 1.6175 13 6 7.5166 1.9083 2.5929 14 6 6.1421 1.8033 2.5067 15 7 1.6102 2.1123 -1.2299 16 6 1.9069 1.5626 -2.4486 17 1 1.8838 0.4907 -2.5774 18 6 2.2374 2.3833 -3.5182 19 7 2.1082 1.9414 -4.7512 20 14 2.8728 4.1122 -3.2075 21 1 1.7451 5.0753 -3.2843 22 1 3.4890 4.1780 -1.8580 23 1 3.8895 4.4577 -4.2332 24 6 0.8630 3.3703 -1.1562 25 6 -0.6363 3.0704 -1.0994 26 6 -1.4050 4.3644 -1.0242 27 8 -0.8143 5.4184 -1.0163 28 8 -2.7458 4.3460 -0.9650 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.6428 0.9886 2.0345 35 1 5.9000 0.5866 -0.6407 36 1 8.3478 0.7855 -0.4792 37 1 10.2193 0.7263 2.0055 38 1 10.2219 1.8544 0.6287 39 1 10.0658 2.4768 2.2890 40 1 7.9737 2.2758 3.4999 41 1 5.5244 2.0897 3.3450 42 1 1.7783 1.0435 -4.9125 43 1 1.1584 3.9164 -0.2604 44 1 1.0796 3.9738 -2.0377 45 1 -0.9317 2.5242 -1.9953 46 1 -0.8530 2.4669 -0.2180 47 1 -3.1949 5.2011 -0.9175 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594735340.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:06 Heat of formation + Delta-G solvation = -104.890759 kcal Electronic energy + Delta-G solvation = -29698.816404 eV Core-core repulsion = 25653.240177 eV Total energy + Delta-G solvation = -4045.576228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53098 -41.17569 -39.77849 -38.08294 -37.03683 -35.88176 -34.67607 -33.72325 -32.35316 -31.83834 -31.50761 -28.62139 -26.78468 -26.29088 -24.10995 -23.85706 -23.06871 -22.10264 -21.84794 -20.92518 -19.36648 -18.97736 -18.49971 -18.06865 -17.40194 -17.22865 -16.56223 -16.49622 -16.25908 -16.06721 -15.63991 -15.33645 -14.95321 -14.69657 -14.61423 -14.53894 -14.39617 -14.29193 -14.06510 -13.60834 -13.39674 -13.22281 -13.13053 -12.94737 -12.79121 -12.66745 -12.50381 -12.47123 -12.09080 -11.99368 -11.86227 -11.76391 -11.56198 -11.44686 -11.25830 -11.02931 -10.59297 -10.40267 -9.83523 -9.06658 -8.86388 -8.38780 -5.52836 0.35799 0.49248 1.25372 1.35499 1.49079 1.66128 1.83665 2.06644 2.29661 2.50466 2.89006 3.20365 3.33487 3.85559 4.00366 4.04312 4.05476 4.07623 4.17069 4.23625 4.27841 4.45893 4.52444 4.52981 4.58749 4.68577 4.70606 4.82649 4.88022 4.89225 4.90183 4.99343 5.10999 5.11574 5.18057 5.20873 5.42190 5.43892 5.47657 5.60855 5.65247 5.67831 5.72847 5.95983 6.18019 6.37213 6.64663 6.93985 7.06291 7.41442 7.58476 8.07099 8.94670 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003627 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.237691 B = 7718.520919 C = 8224.586004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.154 3.846 4 H 0.119 0.881 5 C 0.478 3.522 6 O -0.533 6.533 7 N -0.670 5.670 8 C 0.129 3.871 9 C -0.151 4.151 10 C -0.119 4.119 11 C -0.114 4.114 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.143 4.143 15 N -0.583 5.583 16 C -0.281 4.281 17 H 0.042 0.958 18 C -0.042 4.042 19 N -0.960 5.960 20 Si 1.089 2.911 21 H -0.286 1.286 22 H -0.282 1.282 23 H -0.323 1.323 24 C 0.145 3.855 25 C -0.122 4.122 26 C 0.488 3.512 27 O -0.556 6.556 28 O -0.509 6.509 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.424 0.576 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.031 0.969 45 H 0.099 0.901 46 H 0.135 0.865 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.838 -1.804 21.673 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C 0.043 3.957 4 H 0.137 0.863 5 C 0.265 3.735 6 O -0.406 6.406 7 N -0.319 5.319 8 C 0.034 3.966 9 C -0.171 4.171 10 C -0.138 4.138 11 C -0.115 4.115 12 C -0.164 4.164 13 C -0.121 4.121 14 C -0.163 4.163 15 N -0.304 5.304 16 C -0.411 4.411 17 H 0.060 0.940 18 C -0.239 4.239 19 N -0.603 5.603 20 Si 0.923 3.077 21 H -0.215 1.215 22 H -0.208 1.208 23 H -0.253 1.253 24 C 0.020 3.980 25 C -0.162 4.162 26 C 0.332 3.668 27 O -0.447 6.447 28 O -0.323 6.323 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.262 0.738 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.175 0.825 41 H 0.172 0.828 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.117 0.883 46 H 0.153 0.847 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 2.097 -0.370 20.159 20.271 hybrid contribution -0.768 -1.031 -0.141 1.293 sum 1.330 -1.401 20.018 20.111 Atomic orbital electron populations 1.21701 0.93566 1.01793 1.02487 1.21667 0.98163 0.94187 1.01274 1.20913 0.86854 0.96626 0.91266 0.86316 1.23007 0.93372 0.74846 0.82290 1.90717 1.67372 1.46249 1.36275 1.43807 1.04830 1.69912 1.13339 1.18082 0.83635 0.99030 0.95831 1.21296 0.94524 1.02192 0.99129 1.21105 0.93708 1.00379 0.98614 1.20240 0.97857 0.99942 0.93477 1.20781 0.89226 1.03287 1.03070 1.21209 0.92559 0.99257 0.99048 1.21208 0.96112 1.01546 0.97458 1.44065 1.59711 1.24949 1.01626 1.19561 1.42754 0.91777 0.87036 0.94036 1.26640 0.97450 1.06973 0.92834 1.70970 1.49105 1.18930 1.21275 0.83352 0.75443 0.74459 0.74483 1.21483 1.20782 1.25312 1.20982 0.89512 0.87325 1.00170 1.22054 0.94841 0.92484 1.06795 1.23785 0.81047 0.91815 0.70130 1.90700 1.71012 1.35131 1.47902 1.84525 1.20471 1.42445 1.84820 0.90455 0.93292 0.92410 0.95041 0.89425 0.73776 0.88039 0.85914 0.90081 0.91851 0.90009 0.82533 0.82807 0.93755 0.91495 0.95147 0.88280 0.84726 0.71377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.95 71.98 0.64 -2.73 16 2 C -0.11 -3.30 5.21 30.59 0.16 -3.14 16 3 C 0.15 5.14 2.56 44.24 0.11 5.25 16 4 H 0.12 2.94 7.84 -2.39 -0.02 2.92 16 5 C 0.48 18.25 6.90 87.66 0.61 18.85 16 6 O -0.53 -26.92 12.58 -3.06 -0.04 -26.96 16 7 N -0.67 -19.03 5.34 -303.50 -1.62 -20.65 16 8 C 0.13 3.93 6.32 38.15 0.24 4.17 16 9 C -0.15 -5.42 8.71 22.39 0.20 -5.22 16 10 C -0.12 -3.58 9.69 22.25 0.22 -3.37 16 11 C -0.11 -2.68 5.88 -19.84 -0.12 -2.80 16 12 C -0.11 -1.74 10.01 71.24 0.71 -1.03 16 13 C -0.10 -2.11 9.69 22.25 0.22 -1.89 16 14 C -0.14 -3.25 9.97 22.39 0.22 -3.02 16 15 N -0.58 -25.04 1.27 -682.21 -0.87 -25.91 16 16 C -0.28 -15.22 7.73 84.03 0.65 -14.57 16 17 H 0.04 2.48 6.74 -2.91 -0.02 2.46 16 18 C -0.04 -2.54 5.31 84.86 0.45 -2.09 16 19 N -0.96 -62.53 13.71 21.65 0.30 -62.23 16 20 Si 1.09 60.71 25.33 68.60 1.74 62.45 16 21 H -0.29 -15.26 6.67 99.48 0.66 -14.60 16 22 H -0.28 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.32 -18.85 7.11 99.48 0.71 -18.14 16 24 C 0.15 5.87 3.74 86.38 0.32 6.19 16 25 C -0.12 -3.86 5.06 29.85 0.15 -3.71 16 26 C 0.49 14.92 8.33 71.24 0.59 15.51 16 27 O -0.56 -20.95 16.74 21.98 0.37 -20.58 16 28 O -0.51 -11.35 13.42 -51.39 -0.69 -12.04 16 29 H 0.08 1.39 7.97 -2.39 -0.02 1.37 16 30 H 0.05 1.46 6.14 -2.39 -0.01 1.45 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.03 1.19 6.70 -2.39 -0.02 1.17 16 33 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 34 H 0.42 7.87 8.82 -92.71 -0.82 7.05 16 35 H 0.10 4.44 6.15 -2.91 -0.02 4.43 16 36 H 0.12 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.08 1.03 8.08 -2.38 -0.02 1.02 16 40 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 41 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.25 16.32 8.73 -92.71 -0.81 15.51 16 43 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 44 H 0.03 1.48 3.14 -2.39 -0.01 1.47 16 45 H 0.10 3.47 8.13 -2.38 -0.02 3.45 16 46 H 0.13 3.26 6.68 -2.39 -0.02 3.24 16 47 H 0.42 5.50 9.10 -74.06 -0.67 4.82 16 Total: -1.00 -85.19 382.16 4.00 -81.18 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.56 Total: 18.34 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.38 Total: 6.39 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -2.19 Total: -108.79 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.36 Total: -59.58 kcal Atomic # 14 Polarization: 60.71 SS G_CDS: 1.74 Total: 62.45 kcal Total: -85.19 4.00 -81.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594735340.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.706 kcal (2) G-P(sol) polarization free energy of solvation -85.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds