Wall clock time and date at job start Tue Mar 31 2020 18:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47115 * 2 1 4 4 H 1.09000 * 109.47507 * 303.06635 * 3 2 1 5 5 C 1.50698 * 109.47029 * 183.06770 * 3 2 1 6 6 O 1.21285 * 120.00344 * 240.00062 * 5 3 2 7 7 N 1.34779 * 120.00208 * 60.00382 * 5 3 2 8 8 C 1.39922 * 120.00428 * 184.12229 * 7 5 3 9 9 C 1.38878 * 120.07326 * 144.13885 * 8 7 5 10 10 C 1.38104 * 119.92993 * 179.97438 * 9 8 7 11 11 C 1.38278 * 120.07156 * 0.26234 * 10 9 8 12 12 C 1.50703 * 119.93303 * 179.74549 * 11 10 9 13 13 C 1.38281 * 120.14238 * 359.48664 * 11 10 9 14 14 C 1.38115 * 120.06981 * 0.51319 * 13 11 10 15 15 N 1.46498 * 109.47137 * 63.07217 * 3 2 1 16 16 C 1.36940 * 120.00293 * 54.28074 * 15 3 2 17 17 H 1.08001 * 119.99732 * 323.97171 * 16 15 3 18 18 C 1.38811 * 119.99820 * 143.96721 * 16 15 3 19 19 N 1.31617 * 119.99991 * 337.17299 * 18 16 15 20 20 Si 1.86801 * 119.99619 * 157.17257 * 18 16 15 21 21 H 1.48496 * 109.47235 * 90.00311 * 20 18 16 22 22 H 1.48504 * 109.46794 * 210.00111 * 20 18 16 23 23 H 1.48503 * 109.47205 * 329.99790 * 20 18 16 24 24 C 1.46507 * 119.99916 * 234.28583 * 15 3 2 25 25 C 1.52995 * 109.47123 * 89.99576 * 24 15 3 26 26 C 1.50701 * 109.46945 * 179.97438 * 25 24 15 27 27 O 1.20817 * 120.00050 * 0.02562 * 26 25 24 28 28 O 1.34231 * 119.99914 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47020 * 299.99909 * 1 2 3 31 31 H 1.09000 * 109.47231 * 59.99978 * 1 2 3 32 32 H 1.09007 * 109.47195 * 239.99965 * 2 1 3 33 33 H 1.09000 * 109.47231 * 120.00022 * 2 1 3 34 34 H 0.96997 * 119.99633 * 4.11715 * 7 5 3 35 35 H 1.08000 * 120.03265 * 359.96645 * 9 8 7 36 36 H 1.08001 * 119.96572 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.47307 * 89.99273 * 12 11 10 38 38 H 1.08995 * 109.47520 * 210.00203 * 12 11 10 39 39 H 1.09009 * 109.46653 * 329.99952 * 12 11 10 40 40 H 1.08004 * 119.96913 * 180.23139 * 13 11 10 41 41 H 1.08000 * 120.03950 * 179.77214 * 14 13 11 42 42 H 0.97001 * 119.99245 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.46670 * 209.99682 * 24 15 3 44 44 H 1.09004 * 109.46654 * 329.99502 * 24 15 3 45 45 H 1.09005 * 109.47262 * 300.00303 * 25 24 15 46 46 H 1.09000 * 109.47210 * 59.99913 * 25 24 15 47 47 H 0.96697 * 117.00182 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6325 1.9720 -0.8612 5 6 3.5451 1.4431 -0.0760 6 8 4.1969 1.9522 0.8110 7 7 4.1669 0.8780 -1.1299 8 6 5.5637 0.8016 -1.1596 9 6 6.1884 -0.3039 -1.7220 10 6 7.5673 -0.3759 -1.7503 11 6 8.3258 0.6486 -1.2145 12 6 9.8302 0.5640 -1.2418 13 6 7.7069 1.7531 -0.6584 14 6 6.3284 1.8313 -0.6270 15 7 1.6131 2.1114 1.2314 16 6 1.9067 1.5573 2.4488 17 1 1.8968 0.4842 2.5702 18 6 2.2172 2.3750 3.5268 19 7 2.6677 3.5942 3.3196 20 14 1.9955 1.7448 5.2712 21 1 3.2495 1.0913 5.7246 22 1 1.6766 2.8820 6.1715 23 1 0.8842 0.7604 5.3045 24 6 0.8718 3.3731 1.1605 25 6 -0.6288 3.0804 1.1025 26 6 -1.3913 4.3783 1.0302 27 8 -0.7956 5.4294 1.0251 28 8 -2.7322 4.3665 0.9714 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6460 0.5242 -1.8677 35 1 5.5965 -1.1064 -2.1368 36 1 8.0537 -1.2356 -2.1872 37 1 10.2028 1.0141 -2.1621 38 1 10.2398 1.0980 -0.3844 39 1 10.1361 -0.4813 -1.1989 40 1 8.3021 2.5534 -0.2440 41 1 5.8455 2.6925 -0.1892 42 1 2.8850 4.1653 4.0730 43 1 1.0911 3.9733 2.0435 44 1 1.1702 3.9200 0.2661 45 1 -0.8480 2.4800 0.2195 46 1 -0.9272 2.5335 1.9969 47 1 -3.1772 5.2238 0.9259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594735342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:10 Heat of formation + Delta-G solvation = -81.239296 kcal Electronic energy + Delta-G solvation = -29544.914193 eV Core-core repulsion = 25500.363569 eV Total energy + Delta-G solvation = -4044.550623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.99374 -39.71337 -38.32120 -36.28335 -35.62217 -34.35496 -33.02332 -31.46755 -31.11344 -30.64811 -29.66352 -27.10093 -25.49426 -24.77533 -22.67913 -22.34183 -21.70677 -20.74738 -20.10443 -19.36360 -17.69545 -17.48878 -16.63038 -15.91451 -15.80564 -15.61650 -15.26614 -14.98947 -14.87317 -14.18990 -14.00280 -13.69185 -13.61995 -13.37936 -13.33432 -13.12113 -12.97553 -12.58783 -12.31547 -12.16098 -11.95006 -11.74854 -11.65957 -11.43423 -11.25728 -11.10784 -10.96174 -10.84917 -10.76289 -10.60322 -10.42883 -10.08718 -10.03993 -9.99057 -9.68237 -9.59987 -8.83402 -8.57812 -8.42677 -7.58754 -6.66446 -5.75794 -3.32640 1.58017 1.69487 2.72127 3.38172 3.44111 3.47000 3.48067 3.53355 3.71280 4.11738 4.49261 5.00747 5.08271 5.22056 5.27281 5.36353 5.41452 5.45499 5.62819 5.63288 5.65258 5.69422 5.72547 5.82637 5.89456 5.96237 6.00572 6.06974 6.15263 6.18032 6.27298 6.34351 6.40289 6.48396 6.58498 6.74342 6.79754 6.82142 6.84088 6.86415 6.95086 6.96992 7.45612 7.66958 7.84629 8.02549 8.34165 8.48050 9.06227 9.15750 9.76674 10.30212 11.25968 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003499 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.625309 B = 8000.740962 C = 8799.257976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.155 3.845 4 H 0.074 0.926 5 C 0.476 3.524 6 O -0.458 6.458 7 N -0.694 5.694 8 C 0.159 3.841 9 C -0.155 4.155 10 C -0.106 4.106 11 C -0.119 4.119 12 C -0.107 4.107 13 C -0.102 4.102 14 C -0.117 4.117 15 N -0.546 5.546 16 C -0.264 4.264 17 H 0.064 0.936 18 C 0.027 3.973 19 N -0.861 5.861 20 Si 0.889 3.111 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.160 3.840 25 C -0.133 4.133 26 C 0.476 3.524 27 O -0.516 6.516 28 O -0.528 6.528 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.399 0.601 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.140 0.860 42 H 0.253 0.747 43 H 0.108 0.892 44 H 0.033 0.967 45 H 0.089 0.911 46 H 0.104 0.896 47 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -6.175 -11.907 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.043 3.957 4 H 0.092 0.908 5 C 0.261 3.739 6 O -0.325 6.325 7 N -0.343 5.343 8 C 0.064 3.936 9 C -0.175 4.175 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.164 4.164 13 C -0.120 4.120 14 C -0.138 4.138 15 N -0.263 5.263 16 C -0.394 4.394 17 H 0.082 0.918 18 C -0.176 4.176 19 N -0.500 5.500 20 Si 0.718 3.282 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.202 1.202 24 C 0.033 3.967 25 C -0.173 4.173 26 C 0.318 3.682 27 O -0.404 6.404 28 O -0.340 6.340 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.234 0.766 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.063 0.937 43 H 0.126 0.874 44 H 0.051 0.949 45 H 0.107 0.893 46 H 0.122 0.878 47 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 1.275 -5.688 -10.995 12.444 hybrid contribution -0.529 0.063 0.548 0.764 sum 0.746 -5.625 -10.447 11.889 Atomic orbital electron populations 1.21740 0.95555 1.00442 1.02261 1.21773 0.96586 0.96648 1.01276 1.20685 0.87656 0.94802 0.92555 0.90803 1.23013 0.92904 0.77468 0.80523 1.90791 1.66120 1.39318 1.36225 1.44357 1.03905 1.62652 1.23383 1.17914 0.84033 0.93469 0.98198 1.20868 0.94851 0.96853 1.04969 1.20694 0.93056 0.98368 1.00298 1.19793 0.95727 0.95461 1.01047 1.20703 0.91751 1.02033 1.01923 1.20933 0.94287 0.97626 0.99195 1.21375 0.93368 0.98901 1.00134 1.43706 1.58208 1.24307 1.00115 1.18763 1.44170 0.91323 0.85101 0.91820 1.25147 0.97042 0.96796 0.98587 1.70051 1.41275 1.08755 1.29930 0.86539 0.78182 0.78072 0.85361 1.21309 1.21577 1.20235 1.20798 0.84169 0.88301 1.03440 1.22438 0.99098 0.91142 1.04605 1.24218 0.79770 0.93134 0.71047 1.90697 1.69589 1.34383 1.45711 1.84623 1.22980 1.40349 1.86039 0.93928 0.90720 0.93861 0.93316 0.90989 0.76605 0.86239 0.86431 0.91780 0.91882 0.92038 0.86279 0.84253 0.93655 0.87406 0.94898 0.89257 0.87809 0.74478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.97 37.16 0.33 -1.65 16 2 C -0.12 -1.92 5.15 -26.73 -0.14 -2.06 16 3 C 0.16 2.87 2.56 -69.09 -0.18 2.69 16 4 H 0.07 1.21 7.85 -51.93 -0.41 0.81 16 5 C 0.48 9.61 6.90 -10.99 -0.08 9.53 16 6 O -0.46 -11.66 13.04 5.55 0.07 -11.59 16 7 N -0.69 -11.04 5.17 -9.86 -0.05 -11.09 16 8 C 0.16 2.63 6.28 -83.69 -0.53 2.10 16 9 C -0.15 -2.13 9.97 -39.39 -0.39 -2.52 16 10 C -0.11 -1.36 9.69 -39.62 -0.38 -1.74 16 11 C -0.12 -1.60 5.88 -104.59 -0.62 -2.22 16 12 C -0.11 -1.09 10.01 36.01 0.36 -0.73 16 13 C -0.10 -1.57 9.69 -39.61 -0.38 -1.95 16 14 C -0.12 -2.11 8.69 -39.39 -0.34 -2.46 16 15 N -0.55 -12.15 1.49 -166.98 -0.25 -12.40 16 16 C -0.26 -6.69 7.76 -15.06 -0.12 -6.81 16 17 H 0.06 1.63 6.58 -52.49 -0.35 1.28 16 18 C 0.03 0.74 4.93 -17.43 -0.09 0.65 16 19 N -0.86 -24.81 11.45 55.49 0.64 -24.17 16 20 Si 0.89 21.39 29.61 -169.99 -5.03 16.36 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.16 3.52 4.54 -4.04 -0.02 3.50 16 25 C -0.13 -2.34 5.09 -27.88 -0.14 -2.49 16 26 C 0.48 8.25 8.33 36.01 0.30 8.55 16 27 O -0.52 -10.70 16.74 -18.74 -0.31 -11.02 16 28 O -0.53 -7.15 13.42 -39.26 -0.53 -7.68 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.19 6.19 -51.93 -0.32 0.87 16 31 H 0.04 0.53 7.99 -51.93 -0.41 0.11 16 32 H 0.05 0.61 7.57 -51.93 -0.39 0.22 16 33 H 0.07 1.31 6.67 -51.93 -0.35 0.96 16 34 H 0.40 4.84 8.33 -40.82 -0.34 4.50 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 39 H 0.06 0.55 8.08 -51.92 -0.42 0.13 16 40 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.14 2.91 6.30 -52.49 -0.33 2.58 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.11 2.85 5.42 -51.93 -0.28 2.56 16 44 H 0.03 0.73 7.93 -51.93 -0.41 0.32 16 45 H 0.09 1.37 6.73 -51.93 -0.35 1.02 16 46 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 47 H 0.40 3.59 9.10 45.56 0.41 4.01 16 LS Contribution 386.42 15.07 5.82 5.82 Total: -1.00 -33.62 386.42 -8.08 -41.71 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -6.04 Total: 11.66 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -2.40 Total: 2.40 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.34 Total: -47.66 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.77 Total: -30.29 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.62 -8.08 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594735342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.530 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds