Wall clock time and date at job start Tue Mar 31 2020 18:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47115 * 2 1 4 4 H 1.09000 * 109.47507 * 303.06635 * 3 2 1 5 5 C 1.50698 * 109.47029 * 183.06770 * 3 2 1 6 6 O 1.21285 * 120.00344 * 240.00062 * 5 3 2 7 7 N 1.34779 * 120.00208 * 60.00382 * 5 3 2 8 8 C 1.39922 * 120.00428 * 184.12229 * 7 5 3 9 9 C 1.38878 * 120.07326 * 144.13885 * 8 7 5 10 10 C 1.38104 * 119.92993 * 179.97438 * 9 8 7 11 11 C 1.38278 * 120.07156 * 0.26234 * 10 9 8 12 12 C 1.50703 * 119.93303 * 179.74549 * 11 10 9 13 13 C 1.38281 * 120.14238 * 359.48664 * 11 10 9 14 14 C 1.38115 * 120.06981 * 0.51319 * 13 11 10 15 15 N 1.46498 * 109.47137 * 63.07217 * 3 2 1 16 16 C 1.36940 * 120.00293 * 54.28074 * 15 3 2 17 17 H 1.08001 * 119.99732 * 323.97171 * 16 15 3 18 18 C 1.38811 * 119.99820 * 143.96721 * 16 15 3 19 19 N 1.31617 * 119.99991 * 337.17299 * 18 16 15 20 20 Si 1.86801 * 119.99619 * 157.17257 * 18 16 15 21 21 H 1.48496 * 109.47235 * 90.00311 * 20 18 16 22 22 H 1.48504 * 109.46794 * 210.00111 * 20 18 16 23 23 H 1.48503 * 109.47205 * 329.99790 * 20 18 16 24 24 C 1.46507 * 119.99916 * 234.28583 * 15 3 2 25 25 C 1.52995 * 109.47123 * 89.99576 * 24 15 3 26 26 C 1.50701 * 109.46945 * 179.97438 * 25 24 15 27 27 O 1.20817 * 120.00050 * 0.02562 * 26 25 24 28 28 O 1.34231 * 119.99914 * 180.02562 * 26 25 24 29 29 H 1.08998 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47020 * 299.99909 * 1 2 3 31 31 H 1.09000 * 109.47231 * 59.99978 * 1 2 3 32 32 H 1.09007 * 109.47195 * 239.99965 * 2 1 3 33 33 H 1.09000 * 109.47231 * 120.00022 * 2 1 3 34 34 H 0.96997 * 119.99633 * 4.11715 * 7 5 3 35 35 H 1.08000 * 120.03265 * 359.96645 * 9 8 7 36 36 H 1.08001 * 119.96572 * 179.97438 * 10 9 8 37 37 H 1.09004 * 109.47307 * 89.99273 * 12 11 10 38 38 H 1.08995 * 109.47520 * 210.00203 * 12 11 10 39 39 H 1.09009 * 109.46653 * 329.99952 * 12 11 10 40 40 H 1.08004 * 119.96913 * 180.23139 * 13 11 10 41 41 H 1.08000 * 120.03950 * 179.77214 * 14 13 11 42 42 H 0.97001 * 119.99245 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.46670 * 209.99682 * 24 15 3 44 44 H 1.09004 * 109.46654 * 329.99502 * 24 15 3 45 45 H 1.09005 * 109.47262 * 300.00303 * 25 24 15 46 46 H 1.09000 * 109.47210 * 59.99913 * 25 24 15 47 47 H 0.96697 * 117.00182 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6325 1.9720 -0.8612 5 6 3.5451 1.4431 -0.0760 6 8 4.1969 1.9522 0.8110 7 7 4.1669 0.8780 -1.1299 8 6 5.5637 0.8016 -1.1596 9 6 6.1884 -0.3039 -1.7220 10 6 7.5673 -0.3759 -1.7503 11 6 8.3258 0.6486 -1.2145 12 6 9.8302 0.5640 -1.2418 13 6 7.7069 1.7531 -0.6584 14 6 6.3284 1.8313 -0.6270 15 7 1.6131 2.1114 1.2314 16 6 1.9067 1.5573 2.4488 17 1 1.8968 0.4842 2.5702 18 6 2.2172 2.3750 3.5268 19 7 2.6677 3.5942 3.3196 20 14 1.9955 1.7448 5.2712 21 1 3.2495 1.0913 5.7246 22 1 1.6766 2.8820 6.1715 23 1 0.8842 0.7604 5.3045 24 6 0.8718 3.3731 1.1605 25 6 -0.6288 3.0804 1.1025 26 6 -1.3913 4.3783 1.0302 27 8 -0.7956 5.4294 1.0251 28 8 -2.7322 4.3665 0.9714 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.6460 0.5242 -1.8677 35 1 5.5965 -1.1064 -2.1368 36 1 8.0537 -1.2356 -2.1872 37 1 10.2028 1.0141 -2.1621 38 1 10.2398 1.0980 -0.3844 39 1 10.1361 -0.4813 -1.1989 40 1 8.3021 2.5534 -0.2440 41 1 5.8455 2.6925 -0.1892 42 1 2.8850 4.1653 4.0730 43 1 1.0911 3.9733 2.0435 44 1 1.1702 3.9200 0.2661 45 1 -0.8480 2.4800 0.2195 46 1 -0.9272 2.5335 1.9969 47 1 -3.1772 5.2238 0.9259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594735342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:09 Heat of formation + Delta-G solvation = -103.231097 kcal Electronic energy + Delta-G solvation = -29545.867829 eV Core-core repulsion = 25500.363569 eV Total energy + Delta-G solvation = -4045.504259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.38894 -41.09186 -39.65390 -37.83080 -36.96599 -35.79311 -34.57185 -33.23263 -32.25320 -31.80411 -31.21440 -28.47640 -26.88533 -26.34990 -23.97954 -23.80994 -22.93072 -22.02758 -21.58030 -20.90844 -19.10032 -18.85986 -18.12399 -17.55873 -17.24826 -17.11789 -16.71916 -16.31607 -16.15630 -15.77029 -15.60371 -15.10477 -14.86279 -14.64682 -14.49278 -14.43806 -14.25265 -14.04652 -13.76240 -13.47963 -13.18732 -13.05812 -12.91535 -12.83107 -12.69447 -12.55838 -12.46813 -12.40891 -12.29293 -11.97716 -11.95212 -11.73989 -11.59931 -11.46290 -11.30843 -10.94222 -10.50550 -10.29765 -9.79940 -8.82606 -8.53856 -7.74903 -5.32780 0.40685 0.52330 1.33303 1.43617 1.46658 1.54270 1.99632 2.18098 2.40219 2.56522 2.92969 3.38574 3.63982 3.94978 4.07690 4.11189 4.19296 4.22823 4.31935 4.39495 4.42467 4.50168 4.55910 4.67810 4.75606 4.78314 4.89491 4.89574 4.91650 4.94322 5.12142 5.15351 5.20357 5.22593 5.31404 5.45769 5.52533 5.53591 5.67248 5.70647 5.74690 5.76046 5.79763 5.87735 6.22927 6.47465 6.75270 7.10964 7.21829 7.60862 7.88864 8.38351 9.23474 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012296 B = 0.003499 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.625309 B = 8000.740962 C = 8799.257976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.151 3.849 4 H 0.100 0.900 5 C 0.473 3.527 6 O -0.524 6.524 7 N -0.674 5.674 8 C 0.132 3.868 9 C -0.144 4.144 10 C -0.102 4.102 11 C -0.115 4.115 12 C -0.106 4.106 13 C -0.119 4.119 14 C -0.148 4.148 15 N -0.557 5.557 16 C -0.240 4.240 17 H 0.062 0.938 18 C -0.030 4.030 19 N -0.902 5.902 20 Si 0.939 3.061 21 H -0.299 1.299 22 H -0.298 1.298 23 H -0.258 1.258 24 C 0.164 3.836 25 C -0.118 4.118 26 C 0.486 3.514 27 O -0.558 6.558 28 O -0.511 6.511 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.042 0.958 34 H 0.420 0.580 35 H 0.153 0.847 36 H 0.157 0.843 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.094 0.906 42 H 0.240 0.760 43 H 0.063 0.937 44 H 0.021 0.979 45 H 0.122 0.878 46 H 0.102 0.898 47 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -9.631 -14.751 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.152 4.152 3 C 0.040 3.960 4 H 0.117 0.883 5 C 0.259 3.741 6 O -0.395 6.395 7 N -0.324 5.324 8 C 0.037 3.963 9 C -0.164 4.164 10 C -0.120 4.120 11 C -0.116 4.116 12 C -0.163 4.163 13 C -0.138 4.138 14 C -0.169 4.169 15 N -0.275 5.275 16 C -0.370 4.370 17 H 0.080 0.920 18 C -0.228 4.228 19 N -0.545 5.545 20 Si 0.768 3.232 21 H -0.227 1.227 22 H -0.225 1.225 23 H -0.182 1.182 24 C 0.037 3.963 25 C -0.158 4.158 26 C 0.330 3.670 27 O -0.449 6.449 28 O -0.324 6.324 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.258 0.742 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.050 0.950 43 H 0.081 0.919 44 H 0.040 0.960 45 H 0.140 0.860 46 H 0.120 0.880 47 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 0.455 -9.202 -13.909 16.683 hybrid contribution -0.236 1.086 1.252 1.674 sum 0.219 -8.116 -12.657 15.037 Atomic orbital electron populations 1.21705 0.93812 1.01817 1.02283 1.21700 0.98000 0.93857 1.01668 1.20975 0.86707 0.96747 0.91619 0.88272 1.23252 0.93648 0.76666 0.80542 1.90792 1.67430 1.42345 1.38981 1.43919 1.04173 1.61485 1.22817 1.18094 0.83915 0.94446 0.99800 1.21217 0.95711 0.96173 1.03300 1.21200 0.92750 0.99036 0.99049 1.20222 0.97807 0.94349 0.99243 1.20774 0.89077 1.03606 1.02813 1.21075 0.93398 0.99116 1.00204 1.21194 0.94818 0.98770 1.02106 1.43765 1.59005 1.24061 1.00642 1.18892 1.40845 0.91039 0.86271 0.92010 1.25753 0.98357 0.97183 1.01550 1.70238 1.44466 1.10120 1.29651 0.85739 0.77903 0.77418 0.82107 1.22673 1.22480 1.18186 1.20493 0.87202 0.87839 1.00724 1.22079 0.95956 0.91732 1.06029 1.23961 0.80801 0.92151 0.70076 1.90704 1.70736 1.35659 1.47766 1.84533 1.20737 1.42132 1.85035 0.91922 0.92960 0.91527 0.89515 0.93908 0.74152 0.82906 0.82498 0.90087 0.91904 0.89972 0.86053 0.88758 0.95031 0.91936 0.96031 0.85985 0.87979 0.71704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.97 71.98 0.65 -2.72 16 2 C -0.11 -3.23 5.15 30.59 0.16 -3.07 16 3 C 0.15 5.47 2.56 44.24 0.11 5.59 16 4 H 0.10 3.08 7.85 -2.39 -0.02 3.06 16 5 C 0.47 19.51 6.90 87.66 0.60 20.12 16 6 O -0.52 -28.46 13.04 -3.05 -0.04 -28.50 16 7 N -0.67 -21.02 5.17 -303.50 -1.57 -22.59 16 8 C 0.13 4.34 6.28 38.16 0.24 4.58 16 9 C -0.14 -3.53 9.97 22.39 0.22 -3.31 16 10 C -0.10 -2.25 9.69 22.25 0.22 -2.04 16 11 C -0.12 -2.88 5.88 -19.84 -0.12 -2.99 16 12 C -0.11 -1.84 10.01 71.24 0.71 -1.13 16 13 C -0.12 -3.80 9.69 22.25 0.22 -3.58 16 14 C -0.15 -5.67 8.69 22.39 0.19 -5.48 16 15 N -0.56 -25.30 1.49 -682.20 -1.01 -26.31 16 16 C -0.24 -12.52 7.76 84.03 0.65 -11.87 16 17 H 0.06 3.22 6.58 -2.91 -0.02 3.20 16 18 C -0.03 -1.71 4.93 84.86 0.42 -1.29 16 19 N -0.90 -55.70 11.45 21.65 0.25 -55.46 16 20 Si 0.94 45.84 29.61 68.60 2.03 47.87 16 21 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 22 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.16 7.48 4.54 86.38 0.39 7.87 16 25 C -0.12 -4.08 5.09 29.85 0.15 -3.93 16 26 C 0.49 16.43 8.33 71.24 0.59 17.03 16 27 O -0.56 -23.50 16.74 21.99 0.37 -23.13 16 28 O -0.51 -12.54 13.42 -51.43 -0.69 -13.23 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 1.52 6.19 -2.39 -0.01 1.50 16 31 H 0.07 1.31 7.99 -2.39 -0.02 1.29 16 32 H 0.09 1.82 7.57 -2.38 -0.02 1.80 16 33 H 0.04 1.49 6.67 -2.39 -0.02 1.47 16 34 H 0.42 9.11 8.33 -92.71 -0.77 8.34 16 35 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 36 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.06 1.10 8.09 -2.39 -0.02 1.08 16 39 H 0.08 1.11 8.08 -2.38 -0.02 1.10 16 40 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 41 H 0.09 4.43 6.30 -2.91 -0.02 4.41 16 42 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.06 3.51 5.42 -2.39 -0.01 3.50 16 44 H 0.02 0.99 7.93 -2.39 -0.02 0.97 16 45 H 0.12 3.39 6.73 -2.38 -0.02 3.38 16 46 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 47 H 0.42 6.46 9.10 -74.06 -0.67 5.79 16 Total: -1.00 -81.77 386.42 4.31 -77.46 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: -0.44 Total: 30.12 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: 5.41 Total: 13.78 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -2.34 Total: -104.35 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -0.36 Total: -64.87 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -81.77 4.31 -77.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594735342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.772 kcal (2) G-P(sol) polarization free energy of solvation -81.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds