Wall clock time and date at job start Tue Mar 31 2020 17:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46912 * 2 1 4 4 H 1.09008 * 109.46720 * 174.93518 * 3 2 1 5 5 C 1.50691 * 109.47264 * 54.93475 * 3 2 1 6 6 H 1.08002 * 120.00167 * 239.99439 * 5 3 2 7 7 C 1.37885 * 120.00224 * 59.99513 * 5 3 2 8 8 N 1.31513 * 119.99644 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00148 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47275 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47171 * 119.99794 * 9 7 5 12 12 H 1.48495 * 109.47038 * 239.99897 * 9 7 5 13 13 N 1.46902 * 109.47399 * 294.92852 * 3 2 1 14 14 C 1.46894 * 111.00085 * 273.84117 * 13 3 2 15 15 H 1.09002 * 109.47453 * 37.16255 * 14 13 3 16 16 C 1.53002 * 109.47111 * 277.16113 * 14 13 3 17 17 C 1.50704 * 109.47220 * 157.16565 * 14 13 3 18 18 O 1.21285 * 119.99757 * 359.97438 * 17 14 13 19 19 N 1.34778 * 120.00215 * 179.97438 * 17 14 13 20 20 C 1.46496 * 119.99610 * 179.97438 * 19 17 14 21 21 C 1.50705 * 109.46886 * 179.97438 * 20 19 17 22 22 C 1.38370 * 119.84924 * 269.73337 * 21 20 19 23 23 C 1.37945 * 120.14706 * 179.72044 * 22 21 20 24 24 C 1.39633 * 119.84889 * 0.56959 * 23 22 21 25 25 C 1.47726 * 120.14984 * 179.67819 * 24 23 22 26 26 O 1.21472 * 119.99596 * 180.02562 * 25 24 23 27 27 O 1.34711 * 120.00054 * 0.02562 * 25 24 23 28 28 C 1.39630 * 119.70122 * 359.70205 * 24 23 22 29 29 C 1.37947 * 119.84553 * 359.97438 * 28 24 23 30 30 H 1.08994 * 109.46939 * 58.10528 * 1 2 3 31 31 H 1.09002 * 109.47149 * 178.10767 * 1 2 3 32 32 H 1.09003 * 109.46495 * 298.10686 * 1 2 3 33 33 H 1.09003 * 109.46355 * 240.00529 * 2 1 3 34 34 H 1.09000 * 109.47354 * 120.00509 * 2 1 3 35 35 H 0.96998 * 119.99731 * 179.97438 * 8 7 5 36 36 H 1.00900 * 110.99580 * 37.79337 * 13 3 2 37 37 H 1.09002 * 109.47079 * 60.00238 * 16 14 13 38 38 H 1.09007 * 109.47155 * 179.97438 * 16 14 13 39 39 H 1.08995 * 109.47043 * 299.99977 * 16 14 13 40 40 H 0.96997 * 119.99890 * 0.02562 * 19 17 14 41 41 H 1.08996 * 109.47835 * 299.99573 * 20 19 17 42 42 H 1.08995 * 109.47251 * 60.00676 * 20 19 17 43 43 H 1.07993 * 119.92550 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.07580 * 180.26465 * 23 22 21 45 45 H 0.96700 * 116.99703 * 179.97438 * 27 25 24 46 46 H 1.08000 * 120.07709 * 179.97438 * 28 24 23 47 47 H 1.08004 * 119.92165 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0907 5 6 1.4379 2.1881 1.1629 6 1 0.8285 3.0622 0.9866 7 6 1.6649 1.7545 2.4519 8 7 2.4066 0.6899 2.6665 9 14 0.9179 2.6785 3.8934 10 1 0.1300 3.8312 3.3877 11 1 0.0275 1.7679 4.6571 12 1 2.0018 3.1705 4.7811 13 7 1.6529 2.0988 -1.2560 14 6 2.6430 1.8431 -2.3105 15 1 3.0187 0.8242 -2.2168 16 6 3.8039 2.8297 -2.1702 17 6 1.9957 2.0177 -3.6603 18 8 0.8248 2.3245 -3.7361 19 7 2.7181 1.8330 -4.7830 20 6 2.0887 2.0022 -6.0950 21 6 3.1048 1.7412 -7.1770 22 6 3.8682 2.7842 -7.6709 23 6 4.8041 2.5512 -8.6572 24 6 4.9717 1.2615 -9.1655 25 6 5.9670 1.0058 -10.2268 26 8 6.1101 -0.1171 -10.6673 27 8 6.7157 2.0180 -10.7060 28 6 4.1940 0.2147 -8.6665 29 6 3.2664 0.4605 -7.6754 30 1 -0.3633 0.5430 -0.8725 31 1 -0.3633 -1.0271 -0.0339 32 1 -0.3632 0.4842 0.9065 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 2.5666 0.3851 3.5733 36 1 0.7315 1.8080 -1.5468 37 1 4.2721 2.7035 -1.1940 38 1 4.5388 2.6397 -2.9525 39 1 3.4281 3.8486 -2.2640 40 1 3.6545 1.5872 -4.7223 41 1 1.2622 1.2987 -6.1951 42 1 1.7123 3.0208 -6.1888 43 1 3.7340 3.7821 -7.2805 44 1 5.4023 3.3653 -9.0388 45 1 7.3538 1.8017 -11.3997 46 1 4.3183 -0.7851 -9.0555 47 1 2.6639 -0.3482 -7.2888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595029385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:01 Heat of formation + Delta-G solvation = -106.406928 kcal Electronic energy + Delta-G solvation = -27875.022157 eV Core-core repulsion = 23829.380184 eV Total energy + Delta-G solvation = -4045.641974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91996 -39.93532 -39.09937 -36.59662 -36.47586 -35.02520 -33.28276 -32.01939 -31.54933 -31.08741 -28.61159 -27.19630 -26.12476 -24.18615 -23.45701 -23.19024 -22.59579 -21.28133 -20.14574 -18.95955 -18.64048 -17.99819 -17.40754 -16.29524 -16.09003 -15.95743 -15.89475 -15.38020 -15.16350 -14.94731 -14.63550 -14.34390 -14.05434 -13.76818 -13.52116 -13.16244 -13.01251 -12.94146 -12.68566 -12.41114 -12.12608 -12.06888 -12.01089 -11.81210 -11.59548 -11.47710 -11.14792 -11.10211 -10.91622 -10.71223 -10.49204 -9.99607 -9.88536 -9.72779 -9.54530 -9.52727 -9.25030 -9.13118 -8.93123 -8.32880 -7.24957 -5.96590 -3.97059 0.09210 0.84983 1.99779 2.50326 2.84724 3.06585 3.33217 3.41458 3.46635 3.49598 4.15555 4.26356 4.44242 4.46541 4.57629 4.82470 4.88839 4.98698 5.16442 5.23518 5.26001 5.35608 5.50585 5.51651 5.59570 5.69287 5.71779 5.80979 5.96516 6.04024 6.05244 6.26962 6.28462 6.34944 6.37346 6.41835 6.58148 6.64587 6.92757 7.23362 7.28080 7.38476 7.47644 7.53135 7.71399 7.91677 8.27940 8.35471 8.57471 8.63298 9.09598 9.66511 11.10745 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.001908 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.812755 B =14670.268743 C =14744.194004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.484 4.484 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.667 5.667 14 C 0.069 3.931 15 H 0.060 0.940 16 C -0.131 4.131 17 C 0.517 3.483 18 O -0.528 6.528 19 N -0.733 5.733 20 C 0.155 3.845 21 C -0.065 4.065 22 C -0.114 4.114 23 C -0.061 4.061 24 C -0.127 4.127 25 C 0.527 3.473 26 O -0.513 6.513 27 O -0.512 6.512 28 C -0.054 4.054 29 C -0.112 4.112 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.066 0.934 33 H 0.008 0.992 34 H 0.094 0.906 35 H 0.258 0.742 36 H 0.342 0.658 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.401 0.599 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.415 0.585 46 H 0.140 0.860 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.646 1.201 -24.934 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.186 4.186 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.045 4.045 15 H 0.077 0.923 16 C -0.189 4.189 17 C 0.304 3.696 18 O -0.403 6.403 19 N -0.387 5.387 20 C 0.032 3.968 21 C -0.066 4.066 22 C -0.133 4.133 23 C -0.079 4.079 24 C -0.128 4.128 25 C 0.372 3.628 26 O -0.403 6.403 27 O -0.324 6.324 28 C -0.072 4.072 29 C -0.131 4.131 30 H 0.051 0.949 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.164 0.836 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.236 0.764 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.274 0.726 46 H 0.158 0.842 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.840 1.735 -24.466 25.464 hybrid contribution 0.410 -0.890 0.102 0.985 sum 7.250 0.846 -24.364 25.434 Atomic orbital electron populations 1.21576 0.97579 0.98039 1.01498 1.22130 0.95196 1.01134 1.00104 1.19296 0.96039 0.88545 0.85390 0.94694 1.21085 1.30313 1.11455 0.89461 0.91851 1.24909 0.95606 0.95204 0.98730 1.69887 1.39214 1.24016 1.20601 0.86508 0.78936 0.79913 0.82484 1.19716 1.21286 1.21253 1.60880 1.03866 1.63205 1.02315 1.21450 0.95502 0.98963 0.88614 0.92286 1.21727 0.95534 0.99490 1.02183 1.21168 0.86807 0.75491 0.86132 1.90677 1.16471 1.46024 1.87138 1.46059 1.14715 1.73193 1.04757 1.20227 0.93415 1.03026 0.80160 1.20297 0.96265 0.93641 0.96358 1.21177 0.95571 0.99667 0.96860 1.21485 0.96219 0.95782 0.94444 1.19095 0.99199 0.95590 0.98957 1.20925 0.79236 0.81909 0.80738 1.90905 1.66967 1.23986 1.58439 1.84553 1.51084 1.41216 1.55529 1.21292 0.92778 0.98864 0.94314 1.21135 0.98522 0.96776 0.96651 0.94881 0.95897 0.91518 0.97352 0.88780 0.93222 0.83624 0.90872 0.93533 0.91857 0.76434 0.90313 0.90208 0.84554 0.84151 0.72557 0.84221 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.40 37.16 0.35 -2.49 16 2 C -0.15 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.21 5.19 2.13 -68.87 -0.15 5.04 16 4 H 0.04 0.91 6.96 -51.92 -0.36 0.55 16 5 C -0.48 -13.01 7.38 -34.44 -0.25 -13.27 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.51 5.27 -17.82 -0.09 1.41 16 8 N -0.90 -24.91 11.37 55.43 0.63 -24.28 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.67 -14.30 5.90 -102.17 -0.60 -14.90 16 14 C 0.07 1.17 2.84 -68.86 -0.20 0.97 16 15 H 0.06 1.00 7.18 -51.93 -0.37 0.62 16 16 C -0.13 -1.97 9.27 37.16 0.34 -1.63 16 17 C 0.52 8.07 7.18 -10.98 -0.08 8.00 16 18 O -0.53 -10.15 15.69 5.55 0.09 -10.07 16 19 N -0.73 -8.03 5.44 -61.47 -0.33 -8.37 16 20 C 0.16 1.44 5.79 -5.19 -0.03 1.41 16 21 C -0.07 -0.49 5.25 -104.52 -0.55 -1.04 16 22 C -0.11 -0.77 9.68 -39.64 -0.38 -1.15 16 23 C -0.06 -0.41 9.62 -39.17 -0.38 -0.78 16 24 C -0.13 -1.00 5.87 -104.98 -0.62 -1.62 16 25 C 0.53 4.38 8.27 34.61 0.29 4.67 16 26 O -0.51 -5.73 17.13 -19.24 -0.33 -6.06 16 27 O -0.51 -2.77 12.68 -40.52 -0.51 -3.29 16 28 C -0.05 -0.42 9.60 -39.17 -0.38 -0.79 16 29 C -0.11 -0.81 9.68 -39.64 -0.38 -1.19 16 30 H 0.03 0.69 6.36 -51.93 -0.33 0.36 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 1.59 7.12 -51.93 -0.37 1.22 16 33 H 0.01 0.17 7.44 -51.93 -0.39 -0.22 16 34 H 0.09 2.44 6.22 -51.93 -0.32 2.11 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.34 7.59 5.31 -39.29 -0.21 7.38 16 37 H 0.07 1.23 7.28 -51.93 -0.38 0.85 16 38 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.40 3.59 7.88 -40.82 -0.32 3.27 16 41 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 43 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.14 0.72 7.61 -52.49 -0.40 0.32 16 45 H 0.42 0.48 9.11 45.56 0.42 0.89 16 46 H 0.14 1.02 7.65 -52.49 -0.40 0.62 16 47 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -32.90 390.18 -8.76 -41.66 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.91 Total: 9.12 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -2.65 Total: -5.99 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.31 Total: -47.55 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.76 Total: -19.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.90 -8.76 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.742 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds