Wall clock time and date at job start Tue Mar 31 2020 17:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46912 * 2 1 4 4 H 1.09008 * 109.46720 * 174.93518 * 3 2 1 5 5 C 1.50691 * 109.47264 * 54.93475 * 3 2 1 6 6 H 1.08002 * 120.00167 * 239.99439 * 5 3 2 7 7 C 1.37885 * 120.00224 * 59.99513 * 5 3 2 8 8 N 1.31513 * 119.99644 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00148 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47275 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47171 * 119.99794 * 9 7 5 12 12 H 1.48495 * 109.47038 * 239.99897 * 9 7 5 13 13 N 1.46902 * 109.47399 * 294.92852 * 3 2 1 14 14 C 1.46894 * 111.00085 * 273.84117 * 13 3 2 15 15 H 1.09002 * 109.47453 * 37.16255 * 14 13 3 16 16 C 1.53002 * 109.47111 * 277.16113 * 14 13 3 17 17 C 1.50704 * 109.47220 * 157.16565 * 14 13 3 18 18 O 1.21285 * 119.99757 * 359.97438 * 17 14 13 19 19 N 1.34778 * 120.00215 * 179.97438 * 17 14 13 20 20 C 1.46496 * 119.99610 * 179.97438 * 19 17 14 21 21 C 1.50705 * 109.46886 * 179.97438 * 20 19 17 22 22 C 1.38370 * 119.84924 * 269.73337 * 21 20 19 23 23 C 1.37945 * 120.14706 * 179.72044 * 22 21 20 24 24 C 1.39633 * 119.84889 * 0.56959 * 23 22 21 25 25 C 1.47726 * 120.14984 * 179.67819 * 24 23 22 26 26 O 1.21472 * 119.99596 * 180.02562 * 25 24 23 27 27 O 1.34711 * 120.00054 * 0.02562 * 25 24 23 28 28 C 1.39630 * 119.70122 * 359.70205 * 24 23 22 29 29 C 1.37947 * 119.84553 * 359.97438 * 28 24 23 30 30 H 1.08994 * 109.46939 * 58.10528 * 1 2 3 31 31 H 1.09002 * 109.47149 * 178.10767 * 1 2 3 32 32 H 1.09003 * 109.46495 * 298.10686 * 1 2 3 33 33 H 1.09003 * 109.46355 * 240.00529 * 2 1 3 34 34 H 1.09000 * 109.47354 * 120.00509 * 2 1 3 35 35 H 0.96998 * 119.99731 * 179.97438 * 8 7 5 36 36 H 1.00900 * 110.99580 * 37.79337 * 13 3 2 37 37 H 1.09002 * 109.47079 * 60.00238 * 16 14 13 38 38 H 1.09007 * 109.47155 * 179.97438 * 16 14 13 39 39 H 1.08995 * 109.47043 * 299.99977 * 16 14 13 40 40 H 0.96997 * 119.99890 * 0.02562 * 19 17 14 41 41 H 1.08996 * 109.47835 * 299.99573 * 20 19 17 42 42 H 1.08995 * 109.47251 * 60.00676 * 20 19 17 43 43 H 1.07993 * 119.92550 * 359.97438 * 22 21 20 44 44 H 1.08000 * 120.07580 * 180.26465 * 23 22 21 45 45 H 0.96700 * 116.99703 * 179.97438 * 27 25 24 46 46 H 1.08000 * 120.07709 * 179.97438 * 28 24 23 47 47 H 1.08004 * 119.92165 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1263 1.4438 0.0907 5 6 1.4379 2.1881 1.1629 6 1 0.8285 3.0622 0.9866 7 6 1.6649 1.7545 2.4519 8 7 2.4066 0.6899 2.6665 9 14 0.9179 2.6785 3.8934 10 1 0.1300 3.8312 3.3877 11 1 0.0275 1.7679 4.6571 12 1 2.0018 3.1705 4.7811 13 7 1.6529 2.0988 -1.2560 14 6 2.6430 1.8431 -2.3105 15 1 3.0187 0.8242 -2.2168 16 6 3.8039 2.8297 -2.1702 17 6 1.9957 2.0177 -3.6603 18 8 0.8248 2.3245 -3.7361 19 7 2.7181 1.8330 -4.7830 20 6 2.0887 2.0022 -6.0950 21 6 3.1048 1.7412 -7.1770 22 6 3.8682 2.7842 -7.6709 23 6 4.8041 2.5512 -8.6572 24 6 4.9717 1.2615 -9.1655 25 6 5.9670 1.0058 -10.2268 26 8 6.1101 -0.1171 -10.6673 27 8 6.7157 2.0180 -10.7060 28 6 4.1940 0.2147 -8.6665 29 6 3.2664 0.4605 -7.6754 30 1 -0.3633 0.5430 -0.8725 31 1 -0.3633 -1.0271 -0.0339 32 1 -0.3632 0.4842 0.9065 33 1 1.8933 -0.5138 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 2.5666 0.3851 3.5733 36 1 0.7315 1.8080 -1.5468 37 1 4.2721 2.7035 -1.1940 38 1 4.5388 2.6397 -2.9525 39 1 3.4281 3.8486 -2.2640 40 1 3.6545 1.5872 -4.7223 41 1 1.2622 1.2987 -6.1951 42 1 1.7123 3.0208 -6.1888 43 1 3.7340 3.7821 -7.2805 44 1 5.4023 3.3653 -9.0388 45 1 7.3538 1.8017 -11.3997 46 1 4.3183 -0.7851 -9.0555 47 1 2.6639 -0.3482 -7.2888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595029385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:00 Heat of formation + Delta-G solvation = -129.367056 kcal Electronic energy + Delta-G solvation = -27876.017783 eV Core-core repulsion = 23829.380184 eV Total energy + Delta-G solvation = -4046.637600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.53328 -41.02373 -39.84358 -38.15656 -37.14687 -36.02274 -34.95263 -33.27445 -32.52199 -32.08038 -30.14007 -28.05882 -27.97329 -25.50138 -24.81479 -23.92547 -23.60518 -21.87545 -21.52205 -20.62290 -19.19736 -18.91660 -18.47549 -17.64224 -17.46745 -16.78407 -16.70088 -16.63194 -16.35419 -16.06699 -15.71322 -15.32216 -15.22174 -14.66074 -14.56544 -14.47593 -14.32026 -14.11761 -13.95585 -13.64168 -13.60190 -13.16112 -13.01714 -12.81588 -12.69868 -12.62050 -12.58252 -12.52766 -12.37290 -12.11003 -11.88704 -11.75826 -11.70242 -11.42932 -10.99104 -10.80493 -10.39718 -10.15552 -10.03876 -10.03330 -8.94848 -8.03636 -6.10127 -0.50056 0.32487 1.37786 1.42512 1.45931 1.57048 1.61657 2.02146 2.18622 2.48519 2.77655 3.25633 3.50541 3.64542 3.72632 3.85203 3.94037 4.02588 4.24570 4.29613 4.32345 4.37138 4.53342 4.60360 4.61780 4.66304 4.74079 4.78593 4.84123 4.97781 5.00758 5.12332 5.15910 5.27352 5.35070 5.37886 5.39184 5.43670 5.45275 5.53932 5.67509 5.76032 5.76424 5.86331 6.33372 6.46619 6.70876 6.84901 6.91476 7.00983 7.22239 7.57037 9.02017 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026191 B = 0.001908 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.812755 B =14670.268743 C =14744.194004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.140 4.140 3 C 0.223 3.777 4 H 0.013 0.987 5 C -0.497 4.497 6 H 0.047 0.953 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.063 3.937 15 H 0.065 0.935 16 C -0.124 4.124 17 C 0.523 3.477 18 O -0.568 6.568 19 N -0.711 5.711 20 C 0.158 3.842 21 C -0.066 4.066 22 C -0.111 4.111 23 C -0.056 4.056 24 C -0.139 4.139 25 C 0.532 3.468 26 O -0.550 6.550 27 O -0.503 6.503 28 C -0.063 4.063 29 C -0.111 4.111 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.042 0.958 33 H 0.026 0.974 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.336 0.664 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.414 0.586 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.434 0.566 46 H 0.138 0.862 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 1.814 -26.314 27.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 C 0.115 3.885 4 H 0.031 0.969 5 C -0.536 4.536 6 H 0.065 0.935 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.312 5.312 14 C -0.050 4.050 15 H 0.082 0.918 16 C -0.182 4.182 17 C 0.310 3.690 18 O -0.447 6.447 19 N -0.364 5.364 20 C 0.035 3.965 21 C -0.066 4.066 22 C -0.129 4.129 23 C -0.074 4.074 24 C -0.140 4.140 25 C 0.378 3.622 26 O -0.442 6.442 27 O -0.317 6.317 28 C -0.081 4.081 29 C -0.130 4.130 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.045 0.955 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.157 0.843 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.170 0.830 44 H 0.175 0.825 45 H 0.296 0.704 46 H 0.156 0.844 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.539 2.361 -25.893 27.071 hybrid contribution 0.290 -1.052 0.413 1.167 sum 7.829 1.310 -25.479 26.687 Atomic orbital electron populations 1.21463 0.96539 0.99229 1.00584 1.21988 0.96066 1.00315 0.99554 1.19023 0.94353 0.89015 0.86121 0.96879 1.21268 1.30227 1.11221 0.90882 0.93484 1.25524 0.96009 0.95929 1.00800 1.69990 1.39947 1.24881 1.20999 0.85650 0.78242 0.78783 0.79803 1.19799 1.20903 1.20820 1.60748 1.04573 1.63099 1.02782 1.21554 0.95063 0.99817 0.88613 0.91773 1.21682 0.95529 0.98432 1.02560 1.20780 0.86259 0.75445 0.86554 1.90666 1.18065 1.48318 1.87606 1.45838 1.14998 1.71204 1.04355 1.20271 0.93802 1.03030 0.79418 1.20123 0.96285 0.94057 0.96183 1.21353 0.94943 1.00109 0.96491 1.21646 0.96088 0.95641 0.93996 1.19253 0.99340 0.96259 0.99155 1.21019 0.79130 0.81670 0.80418 1.90892 1.68179 1.25424 1.59743 1.84512 1.51105 1.40068 1.56023 1.21349 0.93116 0.98996 0.94623 1.21219 0.98338 0.97031 0.96379 0.94116 0.93736 0.93896 0.95542 0.91491 0.93199 0.84282 0.93061 0.89161 0.92666 0.74907 0.90608 0.90153 0.83020 0.82453 0.70392 0.84418 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 9.40 71.98 0.68 -4.57 16 2 C -0.14 -6.49 5.49 30.60 0.17 -6.32 16 3 C 0.22 10.93 2.13 44.16 0.09 11.03 16 4 H 0.01 0.70 6.96 -2.38 -0.02 0.69 16 5 C -0.50 -27.18 7.38 25.60 0.19 -26.99 16 6 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 7 C 0.02 0.85 5.27 84.66 0.45 1.30 16 8 N -0.92 -51.51 11.37 21.45 0.24 -51.27 16 9 Si 0.95 44.06 29.54 68.60 2.03 46.08 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.68 -29.16 5.90 -477.16 -2.81 -31.97 16 14 C 0.06 2.09 2.84 44.17 0.13 2.22 16 15 H 0.06 2.08 7.18 -2.39 -0.02 2.06 16 16 C -0.12 -3.56 9.27 71.98 0.67 -2.90 16 17 C 0.52 15.60 7.18 87.66 0.63 16.23 16 18 O -0.57 -21.46 15.69 -3.05 -0.05 -21.51 16 19 N -0.71 -13.91 5.44 -466.79 -2.54 -16.45 16 20 C 0.16 2.60 5.79 85.64 0.50 3.09 16 21 C -0.07 -0.83 5.25 -19.80 -0.10 -0.93 16 22 C -0.11 -1.16 9.68 22.23 0.22 -0.95 16 23 C -0.06 -0.59 9.62 22.54 0.22 -0.37 16 24 C -0.14 -1.95 5.87 -20.10 -0.12 -2.07 16 25 C 0.53 8.13 8.27 70.33 0.58 8.71 16 26 O -0.55 -12.01 17.13 19.93 0.34 -11.67 16 27 O -0.50 -4.39 12.68 -56.21 -0.71 -5.10 16 28 C -0.06 -0.88 9.60 22.54 0.22 -0.67 16 29 C -0.11 -1.40 9.68 22.23 0.22 -1.19 16 30 H 0.04 1.68 6.36 -2.39 -0.02 1.67 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 2.04 7.12 -2.39 -0.02 2.02 16 33 H 0.03 1.10 7.44 -2.39 -0.02 1.08 16 34 H 0.07 3.50 6.22 -2.39 -0.01 3.49 16 35 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 36 H 0.34 14.99 5.31 -89.69 -0.48 14.51 16 37 H 0.05 1.70 7.28 -2.39 -0.02 1.69 16 38 H 0.09 1.76 7.56 -2.38 -0.02 1.74 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.41 6.11 7.88 -92.71 -0.73 5.38 16 41 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 42 H 0.08 1.38 8.08 -2.39 -0.02 1.36 16 43 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.16 1.11 7.61 -2.91 -0.02 1.09 16 45 H 0.43 0.11 9.11 -74.06 -0.67 -0.56 16 46 H 0.14 1.95 7.65 -2.91 -0.02 1.93 16 47 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -71.67 390.18 0.35 -71.31 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.86 Total: 24.95 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: 4.71 Total: -4.38 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -5.11 Total: -99.69 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.42 Total: -38.27 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.67 0.35 -71.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.054 kcal (2) G-P(sol) polarization free energy of solvation -71.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds