Wall clock time and date at job start Tue Mar 31 2020 17:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46804 * 2 1 4 4 H 1.08996 * 109.46768 * 54.36934 * 3 2 1 5 5 C 1.50698 * 109.46845 * 174.36747 * 3 2 1 6 6 H 1.08000 * 120.00127 * 120.00036 * 5 3 2 7 7 C 1.37877 * 120.00217 * 299.99609 * 5 3 2 8 8 N 1.31507 * 120.00011 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47167 * 119.99962 * 9 7 5 12 12 H 1.48495 * 109.47418 * 240.00402 * 9 7 5 13 13 N 1.46894 * 109.46859 * 294.36503 * 3 2 1 14 14 C 1.46907 * 110.99841 * 155.63009 * 13 3 2 15 15 H 1.08997 * 109.46796 * 33.40185 * 14 13 3 16 16 C 1.52995 * 109.46904 * 273.40586 * 14 13 3 17 17 C 1.50701 * 109.47024 * 153.40742 * 14 13 3 18 18 O 1.21283 * 119.99977 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99561 * 180.27883 * 17 14 13 20 20 C 1.46501 * 119.99766 * 179.72235 * 19 17 14 21 21 C 1.50694 * 109.47272 * 179.97438 * 20 19 17 22 22 C 1.38370 * 119.84659 * 269.73012 * 21 20 19 23 23 C 1.37947 * 120.14612 * 179.72162 * 22 21 20 24 24 C 1.39623 * 119.84887 * 0.56953 * 23 22 21 25 25 C 1.47728 * 120.14964 * 179.68185 * 24 23 22 26 26 O 1.21473 * 119.99911 * 180.02562 * 25 24 23 27 27 O 1.34710 * 120.00404 * 0.02562 * 25 24 23 28 28 C 1.39629 * 119.70101 * 359.70335 * 24 23 22 29 29 C 1.37940 * 119.84766 * 359.97438 * 28 24 23 30 30 H 1.09004 * 109.46746 * 186.42045 * 1 2 3 31 31 H 1.08995 * 109.47651 * 306.42122 * 1 2 3 32 32 H 1.09000 * 109.47173 * 66.42339 * 1 2 3 33 33 H 1.08993 * 109.47764 * 239.99732 * 2 1 3 34 34 H 1.09001 * 109.47424 * 119.99250 * 2 1 3 35 35 H 0.96998 * 120.00258 * 180.02562 * 8 7 5 36 36 H 1.00905 * 111.00394 * 31.67971 * 13 3 2 37 37 H 1.08998 * 109.47157 * 175.23394 * 16 14 13 38 38 H 1.08998 * 109.47656 * 295.23144 * 16 14 13 39 39 H 1.09003 * 109.47335 * 55.23162 * 16 14 13 40 40 H 0.96995 * 119.99928 * 359.72039 * 19 17 14 41 41 H 1.08998 * 109.47292 * 299.99785 * 20 19 17 42 42 H 1.08996 * 109.47232 * 59.99663 * 20 19 17 43 43 H 1.07993 * 119.92758 * 359.97199 * 22 21 20 44 44 H 1.07998 * 120.07562 * 180.26582 * 23 22 21 45 45 H 0.96690 * 117.00611 * 180.02562 * 27 25 24 46 46 H 1.08004 * 120.07302 * 179.97438 * 28 24 23 47 47 H 1.08001 * 119.92335 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9846 0.8353 5 6 3.5404 1.4449 0.1395 6 1 4.1538 1.8866 -0.6319 7 6 4.1303 0.8832 1.2519 8 7 3.3835 0.3449 2.1910 9 14 5.9903 0.8854 1.4244 10 1 6.5965 1.5462 0.2406 11 1 6.3726 1.6257 2.6537 12 1 6.4807 -0.5132 1.5161 13 7 1.6644 2.0946 -1.2616 14 6 1.5983 3.5534 -1.1010 15 1 2.3483 3.8736 -0.3777 16 6 0.2071 3.9490 -0.6020 17 6 1.8638 4.2174 -2.4275 18 8 2.0866 3.5419 -3.4099 19 7 1.8597 5.5619 -2.5208 20 6 2.1238 6.2075 -3.8091 21 6 2.0608 7.7040 -3.6433 22 6 0.8599 8.3670 -3.8244 23 6 0.7939 9.7360 -3.6685 24 6 1.9451 10.4542 -3.3390 25 6 1.8836 11.9213 -3.1774 26 8 2.8869 12.5434 -2.8911 27 8 0.7149 12.5693 -3.3475 28 6 3.1549 9.7794 -3.1633 29 6 3.2052 8.4094 -3.3157 30 1 -0.3633 -1.0213 0.1149 31 1 -0.3634 0.6101 0.8269 32 1 -0.3633 0.4110 -0.9419 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.7985 -0.0500 2.9738 36 1 0.7912 1.7295 -1.6115 37 1 0.1838 5.0202 -0.4021 38 1 -0.5346 3.7052 -1.3626 39 1 -0.0191 3.4033 0.3141 40 1 1.6818 6.1020 -1.7350 41 1 3.1147 5.9221 -4.1622 42 1 1.3745 5.8909 -4.5346 43 1 -0.0287 7.8109 -4.0843 44 1 -0.1449 10.2518 -3.8059 45 1 0.7242 13.5292 -3.2317 46 1 4.0491 10.3290 -2.9088 47 1 4.1404 7.8863 -3.1805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595029387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:06 Heat of formation + Delta-G solvation = -106.939809 kcal Electronic energy + Delta-G solvation = -27920.876430 eV Core-core repulsion = 23875.211349 eV Total energy + Delta-G solvation = -4045.665081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86157 -39.74272 -38.93653 -36.55076 -36.43668 -34.82808 -33.24287 -31.93602 -31.48736 -31.37254 -28.75844 -27.16792 -26.10336 -24.21271 -23.32471 -23.04399 -22.32351 -21.20152 -19.85444 -19.63867 -18.58923 -17.92254 -16.92729 -16.27244 -16.07109 -15.96883 -15.81014 -15.34518 -15.05553 -14.78080 -14.49368 -14.18857 -14.01218 -13.83657 -13.52827 -13.33903 -13.02750 -12.88388 -12.64153 -12.55509 -12.03176 -11.99517 -11.94188 -11.83608 -11.70758 -11.49739 -11.16807 -11.05180 -10.88528 -10.85478 -10.59143 -9.96199 -9.91557 -9.65402 -9.57976 -9.45956 -9.10699 -9.00540 -8.92680 -8.35836 -7.21397 -5.97496 -4.01437 0.16132 0.91757 2.05854 2.55078 3.12471 3.17015 3.31356 3.39833 3.45977 3.61370 4.25377 4.33068 4.45311 4.50774 4.64494 4.90084 4.96288 5.10747 5.21212 5.31317 5.31776 5.34482 5.49581 5.58521 5.58829 5.70627 5.75623 5.88193 5.97759 6.01139 6.12484 6.15785 6.17217 6.21731 6.36166 6.37701 6.43202 6.54671 6.84773 7.06901 7.15685 7.43066 7.44064 7.70034 7.78526 7.92683 8.25943 8.38052 8.65641 8.74952 9.07924 9.63982 11.07612 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002262 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.480719 B =12377.787689 C =13346.191313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.663 5.663 14 C 0.077 3.923 15 H 0.109 0.891 16 C -0.175 4.175 17 C 0.521 3.479 18 O -0.517 6.517 19 N -0.739 5.739 20 C 0.156 3.844 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.062 4.062 24 C -0.128 4.128 25 C 0.527 3.473 26 O -0.514 6.514 27 O -0.512 6.512 28 C -0.054 4.054 29 C -0.112 4.112 30 H 0.037 0.963 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.259 0.741 36 H 0.324 0.676 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.415 0.585 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 20.577 -9.580 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.294 5.294 14 C -0.038 4.038 15 H 0.127 0.873 16 C -0.234 4.234 17 C 0.307 3.693 18 O -0.390 6.390 19 N -0.394 5.394 20 C 0.032 3.968 21 C -0.063 4.063 22 C -0.134 4.134 23 C -0.080 4.080 24 C -0.130 4.130 25 C 0.372 3.628 26 O -0.403 6.403 27 O -0.324 6.324 28 C -0.072 4.072 29 C -0.130 4.130 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.274 0.726 46 H 0.158 0.842 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.385 19.671 -10.363 23.428 hybrid contribution 0.114 1.073 1.162 1.585 sum -7.270 20.744 -9.201 23.829 Atomic orbital electron populations 1.21885 0.99585 0.99802 0.99473 1.21760 0.91251 1.00197 1.03228 1.19220 0.95508 0.90090 0.83821 0.97805 1.21277 0.91295 1.36527 1.04085 0.91996 1.24946 0.98072 0.95610 0.95868 1.69874 1.34580 1.39571 1.09581 0.86512 0.85874 0.77678 0.77787 1.19769 1.21272 1.21108 1.60327 1.36395 0.99663 1.33006 1.21360 0.97301 0.92253 0.92886 0.87348 1.22466 0.97408 1.01437 1.02117 1.21170 0.75572 0.80856 0.91714 1.90659 1.46477 1.63296 1.38609 1.46135 1.75223 1.07103 1.10946 1.20186 1.02904 0.86366 0.87295 1.20327 0.93561 0.95838 0.96591 1.21157 0.97875 0.94028 1.00380 1.21464 0.97749 0.94066 0.94744 1.19080 0.95809 0.89145 1.08945 1.20938 0.80371 0.88788 0.72706 1.90905 1.36142 1.68794 1.44459 1.84549 1.36142 1.28223 1.83519 1.21299 0.96820 0.94240 0.94857 1.21162 0.98962 0.93412 0.99499 0.94355 0.93912 0.94574 0.93875 0.88150 0.93144 0.85705 0.92614 0.92708 0.91248 0.76760 0.90364 0.90515 0.84678 0.84250 0.72615 0.84236 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.62 37.16 0.36 -2.48 16 2 C -0.13 -2.93 5.37 -26.73 -0.14 -3.07 16 3 C 0.22 5.30 1.83 -68.86 -0.13 5.18 16 4 H 0.00 0.11 7.21 -51.93 -0.37 -0.26 16 5 C -0.49 -13.41 8.47 -34.44 -0.29 -13.70 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -24.96 11.29 55.43 0.63 -24.34 16 9 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.66 -14.04 5.54 -102.17 -0.57 -14.61 16 14 C 0.08 1.35 2.80 -68.86 -0.19 1.15 16 15 H 0.11 2.05 7.60 -51.93 -0.39 1.66 16 16 C -0.17 -2.43 9.02 37.15 0.34 -2.10 16 17 C 0.52 8.72 7.22 -10.98 -0.08 8.64 16 18 O -0.52 -10.75 16.43 5.55 0.09 -10.66 16 19 N -0.74 -8.89 5.46 -61.48 -0.34 -9.23 16 20 C 0.16 1.62 5.79 -5.20 -0.03 1.59 16 21 C -0.06 -0.52 5.25 -104.53 -0.55 -1.07 16 22 C -0.12 -0.84 9.68 -39.64 -0.38 -1.23 16 23 C -0.06 -0.45 9.62 -39.17 -0.38 -0.82 16 24 C -0.13 -1.09 5.87 -104.98 -0.62 -1.71 16 25 C 0.53 4.66 8.27 34.61 0.29 4.95 16 26 O -0.51 -6.02 17.13 -19.25 -0.33 -6.35 16 27 O -0.51 -2.99 12.68 -40.52 -0.51 -3.50 16 28 C -0.05 -0.46 9.60 -39.17 -0.38 -0.84 16 29 C -0.11 -0.92 9.68 -39.64 -0.38 -1.31 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.62 6.68 -51.93 -0.35 0.27 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 35 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 36 H 0.32 6.47 6.34 -39.29 -0.25 6.22 16 37 H 0.05 0.61 7.71 -51.93 -0.40 0.21 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.05 7.50 -51.93 -0.39 0.66 16 40 H 0.40 3.97 7.98 -40.82 -0.33 3.64 16 41 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 42 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.78 7.61 -52.49 -0.40 0.38 16 45 H 0.41 0.64 9.11 45.56 0.42 1.05 16 46 H 0.14 1.14 7.65 -52.48 -0.40 0.74 16 47 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 395.06 15.07 5.95 5.95 Total: -1.00 -33.74 395.06 -8.85 -42.59 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.10 Total: 9.16 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -2.66 Total: -5.40 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: -0.28 Total: -48.17 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.75 Total: -20.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.74 -8.85 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.347 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds