Wall clock time and date at job start Tue Mar 31 2020 17:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46804 * 2 1 4 4 H 1.08996 * 109.46768 * 54.36934 * 3 2 1 5 5 C 1.50698 * 109.46845 * 174.36747 * 3 2 1 6 6 H 1.08000 * 120.00127 * 120.00036 * 5 3 2 7 7 C 1.37877 * 120.00217 * 299.99609 * 5 3 2 8 8 N 1.31507 * 120.00011 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47394 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47167 * 119.99962 * 9 7 5 12 12 H 1.48495 * 109.47418 * 240.00402 * 9 7 5 13 13 N 1.46894 * 109.46859 * 294.36503 * 3 2 1 14 14 C 1.46907 * 110.99841 * 155.63009 * 13 3 2 15 15 H 1.08997 * 109.46796 * 33.40185 * 14 13 3 16 16 C 1.52995 * 109.46904 * 273.40586 * 14 13 3 17 17 C 1.50701 * 109.47024 * 153.40742 * 14 13 3 18 18 O 1.21283 * 119.99977 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99561 * 180.27883 * 17 14 13 20 20 C 1.46501 * 119.99766 * 179.72235 * 19 17 14 21 21 C 1.50694 * 109.47272 * 179.97438 * 20 19 17 22 22 C 1.38370 * 119.84659 * 269.73012 * 21 20 19 23 23 C 1.37947 * 120.14612 * 179.72162 * 22 21 20 24 24 C 1.39623 * 119.84887 * 0.56953 * 23 22 21 25 25 C 1.47728 * 120.14964 * 179.68185 * 24 23 22 26 26 O 1.21473 * 119.99911 * 180.02562 * 25 24 23 27 27 O 1.34710 * 120.00404 * 0.02562 * 25 24 23 28 28 C 1.39629 * 119.70101 * 359.70335 * 24 23 22 29 29 C 1.37940 * 119.84766 * 359.97438 * 28 24 23 30 30 H 1.09004 * 109.46746 * 186.42045 * 1 2 3 31 31 H 1.08995 * 109.47651 * 306.42122 * 1 2 3 32 32 H 1.09000 * 109.47173 * 66.42339 * 1 2 3 33 33 H 1.08993 * 109.47764 * 239.99732 * 2 1 3 34 34 H 1.09001 * 109.47424 * 119.99250 * 2 1 3 35 35 H 0.96998 * 120.00258 * 180.02562 * 8 7 5 36 36 H 1.00905 * 111.00394 * 31.67971 * 13 3 2 37 37 H 1.08998 * 109.47157 * 175.23394 * 16 14 13 38 38 H 1.08998 * 109.47656 * 295.23144 * 16 14 13 39 39 H 1.09003 * 109.47335 * 55.23162 * 16 14 13 40 40 H 0.96995 * 119.99928 * 359.72039 * 19 17 14 41 41 H 1.08998 * 109.47292 * 299.99785 * 20 19 17 42 42 H 1.08996 * 109.47232 * 59.99663 * 20 19 17 43 43 H 1.07993 * 119.92758 * 359.97199 * 22 21 20 44 44 H 1.07998 * 120.07562 * 180.26582 * 23 22 21 45 45 H 0.96690 * 117.00611 * 180.02562 * 27 25 24 46 46 H 1.08004 * 120.07302 * 179.97438 * 28 24 23 47 47 H 1.08001 * 119.92335 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9846 0.8353 5 6 3.5404 1.4449 0.1395 6 1 4.1538 1.8866 -0.6319 7 6 4.1303 0.8832 1.2519 8 7 3.3835 0.3449 2.1910 9 14 5.9903 0.8854 1.4244 10 1 6.5965 1.5462 0.2406 11 1 6.3726 1.6257 2.6537 12 1 6.4807 -0.5132 1.5161 13 7 1.6644 2.0946 -1.2616 14 6 1.5983 3.5534 -1.1010 15 1 2.3483 3.8736 -0.3777 16 6 0.2071 3.9490 -0.6020 17 6 1.8638 4.2174 -2.4275 18 8 2.0866 3.5419 -3.4099 19 7 1.8597 5.5619 -2.5208 20 6 2.1238 6.2075 -3.8091 21 6 2.0608 7.7040 -3.6433 22 6 0.8599 8.3670 -3.8244 23 6 0.7939 9.7360 -3.6685 24 6 1.9451 10.4542 -3.3390 25 6 1.8836 11.9213 -3.1774 26 8 2.8869 12.5434 -2.8911 27 8 0.7149 12.5693 -3.3475 28 6 3.1549 9.7794 -3.1633 29 6 3.2052 8.4094 -3.3157 30 1 -0.3633 -1.0213 0.1149 31 1 -0.3634 0.6101 0.8269 32 1 -0.3633 0.4110 -0.9419 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.7985 -0.0500 2.9738 36 1 0.7912 1.7295 -1.6115 37 1 0.1838 5.0202 -0.4021 38 1 -0.5346 3.7052 -1.3626 39 1 -0.0191 3.4033 0.3141 40 1 1.6818 6.1020 -1.7350 41 1 3.1147 5.9221 -4.1622 42 1 1.3745 5.8909 -4.5346 43 1 -0.0287 7.8109 -4.0843 44 1 -0.1449 10.2518 -3.8059 45 1 0.7242 13.5292 -3.2317 46 1 4.0491 10.3290 -2.9088 47 1 4.1404 7.8863 -3.1805 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595029387.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:05 Heat of formation + Delta-G solvation = -130.762812 kcal Electronic energy + Delta-G solvation = -27921.909473 eV Core-core repulsion = 23875.211349 eV Total energy + Delta-G solvation = -4046.698124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.51877 -40.85628 -39.80185 -38.10541 -37.14291 -35.90777 -34.95238 -33.46255 -32.58819 -32.08091 -30.24847 -28.20995 -27.81620 -25.34721 -24.57389 -23.86758 -23.54756 -21.86197 -21.48462 -21.11730 -19.19344 -18.60385 -18.32488 -18.02834 -17.33204 -16.76270 -16.69658 -16.53549 -16.20619 -15.95165 -15.65704 -15.43883 -15.31999 -14.84994 -14.53866 -14.35131 -14.27321 -14.10820 -13.76968 -13.65015 -13.47652 -13.24761 -13.16384 -12.98720 -12.77137 -12.66841 -12.61294 -12.52379 -12.24236 -12.10441 -11.96866 -11.75280 -11.67332 -11.47890 -10.99752 -10.72365 -10.41990 -10.08178 -10.02502 -10.01103 -8.90835 -8.05485 -6.16747 -0.49456 0.32430 1.38600 1.39046 1.42552 1.53712 1.79467 2.01862 2.25203 2.44929 2.78883 3.19373 3.52682 3.71379 3.72869 3.93199 3.95812 4.03136 4.22415 4.29776 4.33909 4.36864 4.54435 4.60782 4.62023 4.67000 4.73086 4.77919 4.83003 4.93417 5.00571 5.11101 5.15866 5.23259 5.27576 5.28993 5.39755 5.46034 5.46948 5.54219 5.62019 5.76271 5.77069 5.91169 6.36653 6.45197 6.68156 6.91822 6.97148 7.00428 7.40265 7.52355 8.96981 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.002262 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.480719 B =12377.787689 C =13346.191313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.231 3.769 4 H -0.014 1.014 5 C -0.510 4.510 6 H 0.041 0.959 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.277 1.277 12 H -0.282 1.282 13 N -0.676 5.676 14 C 0.072 3.928 15 H 0.090 0.910 16 C -0.163 4.163 17 C 0.525 3.475 18 O -0.563 6.563 19 N -0.717 5.717 20 C 0.159 3.841 21 C -0.064 4.064 22 C -0.109 4.109 23 C -0.054 4.054 24 C -0.139 4.139 25 C 0.532 3.468 26 O -0.550 6.550 27 O -0.502 6.502 28 C -0.063 4.063 29 C -0.115 4.115 30 H 0.054 0.946 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.261 0.739 36 H 0.331 0.669 37 H 0.089 0.911 38 H 0.066 0.934 39 H 0.056 0.944 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.434 0.566 46 H 0.136 0.864 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 22.067 -10.004 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.123 3.877 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.059 0.941 7 C -0.184 4.184 8 N -0.555 5.555 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.308 5.308 14 C -0.042 4.042 15 H 0.107 0.893 16 C -0.222 4.222 17 C 0.311 3.689 18 O -0.440 6.440 19 N -0.372 5.372 20 C 0.036 3.964 21 C -0.065 4.065 22 C -0.127 4.127 23 C -0.072 4.072 24 C -0.140 4.140 25 C 0.378 3.622 26 O -0.443 6.443 27 O -0.316 6.316 28 C -0.081 4.081 29 C -0.133 4.133 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.248 0.752 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.173 0.827 44 H 0.178 0.822 45 H 0.296 0.704 46 H 0.154 0.846 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.036 21.232 -10.776 25.467 hybrid contribution 0.584 0.716 1.257 1.561 sum -8.452 21.948 -9.519 25.372 Atomic orbital electron populations 1.21736 0.96016 1.01159 1.00595 1.21603 0.94474 0.99108 1.00974 1.18936 0.93692 0.90615 0.84453 0.99664 1.21468 0.93066 1.36661 1.03728 0.94113 1.25575 1.01790 0.95366 0.95670 1.69975 1.35900 1.39833 1.09818 0.85642 0.81416 0.77667 0.77683 1.20163 1.20320 1.20763 1.60160 1.37176 1.01935 1.31552 1.21397 0.99164 0.90324 0.93327 0.89251 1.22337 0.94857 1.03427 1.01585 1.20928 0.75247 0.82112 0.90591 1.90642 1.48958 1.64658 1.39774 1.45907 1.73257 1.05649 1.12368 1.20219 1.02489 0.87542 0.86194 1.20134 0.94234 0.94429 0.97707 1.21351 0.97938 0.94160 0.99301 1.21658 0.97985 0.93961 0.93622 1.19238 0.96297 0.89294 1.09207 1.20996 0.80437 0.88951 0.71791 1.90894 1.37491 1.69535 1.46355 1.84504 1.34442 1.29959 1.82708 1.21329 0.97101 0.94345 0.95359 1.21205 0.99242 0.93389 0.99471 0.92665 0.93735 0.92640 0.95241 0.91149 0.93016 0.84964 0.89222 0.91502 0.92487 0.75226 0.91447 0.89983 0.82741 0.82206 0.70386 0.84564 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.62 71.98 0.69 -4.35 16 2 C -0.12 -5.80 5.37 30.60 0.16 -5.63 16 3 C 0.23 11.33 1.83 44.17 0.08 11.41 16 4 H -0.01 -0.74 7.21 -2.39 -0.02 -0.75 16 5 C -0.51 -28.51 8.47 25.60 0.22 -28.30 16 6 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 7 C 0.01 0.80 5.29 84.66 0.45 1.25 16 8 N -0.91 -51.70 11.29 21.45 0.24 -51.46 16 9 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 10 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 N -0.68 -28.91 5.54 -477.16 -2.64 -31.56 16 14 C 0.07 2.51 2.80 44.17 0.12 2.63 16 15 H 0.09 3.44 7.60 -2.39 -0.02 3.43 16 16 C -0.16 -4.21 9.02 71.98 0.65 -3.57 16 17 C 0.52 17.25 7.22 87.66 0.63 17.89 16 18 O -0.56 -23.45 16.43 -3.04 -0.05 -23.50 16 19 N -0.72 -16.15 5.46 -466.80 -2.55 -18.69 16 20 C 0.16 3.05 5.79 85.63 0.50 3.55 16 21 C -0.06 -0.95 5.25 -19.80 -0.10 -1.06 16 22 C -0.11 -1.26 9.68 22.23 0.22 -1.04 16 23 C -0.05 -0.62 9.62 22.54 0.22 -0.40 16 24 C -0.14 -2.14 5.87 -20.10 -0.12 -2.25 16 25 C 0.53 8.66 8.27 70.33 0.58 9.25 16 26 O -0.55 -12.65 17.13 19.92 0.34 -12.31 16 27 O -0.50 -4.66 12.68 -56.20 -0.71 -5.38 16 28 C -0.06 -1.03 9.60 22.54 0.22 -0.81 16 29 C -0.11 -1.77 9.68 22.23 0.22 -1.55 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.81 6.68 -2.39 -0.02 1.79 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 3.75 5.94 -2.39 -0.01 3.74 16 35 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.33 13.06 6.34 -89.69 -0.57 12.50 16 37 H 0.09 1.69 7.71 -2.39 -0.02 1.67 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 1.64 7.50 -2.39 -0.02 1.62 16 40 H 0.41 7.24 7.98 -92.71 -0.74 6.50 16 41 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 42 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 43 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.16 1.17 7.61 -2.91 -0.02 1.15 16 45 H 0.43 0.34 9.11 -74.06 -0.67 -0.34 16 46 H 0.14 2.25 7.65 -2.91 -0.02 2.23 16 47 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -74.54 395.06 0.42 -74.12 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.97 Total: 25.27 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 4.73 Total: -3.00 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -4.95 Total: -101.71 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -0.42 Total: -41.18 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -74.54 0.42 -74.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029387.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.642 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds