Wall clock time and date at job start Tue Mar 31 2020 17:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.08997 * 109.47087 * 305.64185 * 3 2 1 5 5 C 1.50698 * 109.46995 * 185.64353 * 3 2 1 6 6 H 1.07999 * 119.99734 * 240.00204 * 5 3 2 7 7 C 1.37870 * 120.00180 * 59.99974 * 5 3 2 8 8 N 1.31511 * 120.00009 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46845 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47284 * 120.00191 * 9 7 5 12 12 H 1.48500 * 109.47065 * 240.00122 * 9 7 5 13 13 N 1.46901 * 109.47068 * 65.64269 * 3 2 1 14 14 C 1.46903 * 111.00097 * 204.30259 * 13 3 2 15 15 H 1.08998 * 109.46861 * 326.26093 * 14 13 3 16 16 C 1.52995 * 109.47064 * 86.26059 * 14 13 3 17 17 C 1.50702 * 109.47046 * 206.25992 * 14 13 3 18 18 O 1.21277 * 120.00008 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99966 * 179.97438 * 17 14 13 20 20 C 1.46492 * 120.00193 * 180.02562 * 19 17 14 21 21 C 1.50697 * 109.47638 * 180.02562 * 20 19 17 22 22 C 1.38372 * 119.84826 * 269.73057 * 21 20 19 23 23 C 1.37945 * 120.14678 * 179.72025 * 22 21 20 24 24 C 1.39624 * 119.84980 * 0.56277 * 23 22 21 25 25 C 1.47725 * 120.14814 * 179.68222 * 24 23 22 26 26 O 1.21473 * 119.99876 * 180.02562 * 25 24 23 27 27 O 1.34709 * 120.00144 * 0.02787 * 25 24 23 28 28 C 1.39626 * 119.70057 * 359.71245 * 24 23 22 29 29 C 1.37948 * 119.85135 * 359.97438 * 28 24 23 30 30 H 1.09003 * 109.47077 * 293.71884 * 1 2 3 31 31 H 1.09005 * 109.47151 * 53.71405 * 1 2 3 32 32 H 1.08996 * 109.47520 * 173.71257 * 1 2 3 33 33 H 1.08996 * 109.46682 * 120.00122 * 2 1 3 34 34 H 1.08998 * 109.46850 * 239.99990 * 2 1 3 35 35 H 0.97001 * 120.00167 * 179.97438 * 8 7 5 36 36 H 1.00898 * 110.99819 * 328.25701 * 13 3 2 37 37 H 1.08994 * 109.47346 * 64.80496 * 16 14 13 38 38 H 1.08997 * 109.47227 * 184.80660 * 16 14 13 39 39 H 1.09003 * 109.47085 * 304.80214 * 16 14 13 40 40 H 0.97000 * 119.99572 * 0.02562 * 19 17 14 41 41 H 1.09008 * 109.47082 * 299.99919 * 20 19 17 42 42 H 1.09003 * 109.47231 * 59.99437 * 20 19 17 43 43 H 1.07994 * 119.92257 * 359.97149 * 22 21 20 44 44 H 1.08007 * 120.06996 * 180.27169 * 23 22 21 45 45 H 0.96705 * 116.99940 * 180.02562 * 27 25 24 46 46 H 1.08001 * 120.07761 * 179.97438 * 28 24 23 47 47 H 1.07993 * 119.92968 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4447 -0.1397 6 1 4.1540 1.8863 0.6317 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3456 -2.1917 9 14 5.9901 0.8863 -1.4257 10 1 6.5964 1.5469 -0.2420 11 1 6.4812 -0.5120 -1.5174 12 1 6.3711 1.6264 -2.6555 13 7 1.6648 2.0945 1.2617 14 6 1.6003 3.5534 1.1016 15 1 2.3549 3.8737 0.3832 16 6 0.2124 3.9499 0.5943 17 6 1.8580 4.2164 2.4301 18 8 2.0735 3.5403 3.4136 19 7 1.8489 5.5608 2.5254 20 6 2.0999 6.2054 3.8167 21 6 2.0337 7.7019 3.6525 22 6 3.1799 8.4120 3.3418 23 6 3.1252 9.7814 3.1844 24 6 1.9121 10.4522 3.3510 25 6 1.8474 11.9193 3.1910 26 8 0.7906 12.5002 3.3370 27 8 2.9603 12.6130 2.8831 28 6 0.7604 9.7301 3.6702 29 6 0.8279 8.3602 3.8183 30 1 -0.3633 0.4134 0.9409 31 1 -0.3634 0.6082 -0.8284 32 1 -0.3634 -1.0214 -0.1125 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.7979 -0.0493 -2.9746 36 1 0.7911 1.7302 1.6111 37 1 -0.5339 3.7066 1.3504 38 1 0.1911 5.0212 0.3943 39 1 -0.0086 3.4045 -0.3232 40 1 1.6761 6.1015 1.7388 41 1 1.3452 5.8854 4.5353 42 1 3.0886 5.9225 4.1779 43 1 4.1186 7.8925 3.2182 44 1 4.0198 10.3339 2.9376 45 1 2.8685 13.5711 2.7890 46 1 -0.1811 10.2428 3.8008 47 1 -0.0621 7.8004 4.0647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595029388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:09 Heat of formation + Delta-G solvation = -107.020624 kcal Electronic energy + Delta-G solvation = -27920.589837 eV Core-core repulsion = 23874.921251 eV Total energy + Delta-G solvation = -4045.668586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86168 -39.74423 -38.93784 -36.54934 -36.43718 -34.83006 -33.24281 -31.93771 -31.48934 -31.37088 -28.75584 -27.16687 -26.10615 -24.20969 -23.33921 -23.03573 -22.32015 -21.20174 -19.85592 -19.63782 -18.59117 -17.92117 -16.92427 -16.27454 -16.07179 -15.98146 -15.81126 -15.36099 -14.95897 -14.82689 -14.55975 -14.15028 -14.00380 -13.83888 -13.53012 -13.34385 -13.03056 -12.88076 -12.63947 -12.55550 -12.03550 -11.99641 -11.93855 -11.83678 -11.70252 -11.50059 -11.16967 -11.05286 -10.88726 -10.85687 -10.59469 -9.96463 -9.91684 -9.65457 -9.58065 -9.46009 -9.10731 -9.00733 -8.92837 -8.36129 -7.21453 -5.97741 -4.01732 0.15999 0.91680 2.05658 2.55471 3.12475 3.16783 3.30854 3.39367 3.45386 3.61242 4.24702 4.34413 4.44912 4.50860 4.63907 4.89598 4.95829 5.10813 5.21512 5.30373 5.31857 5.35073 5.49803 5.58045 5.59490 5.70664 5.76638 5.86725 5.98104 6.01453 6.12319 6.15915 6.17390 6.21870 6.36080 6.37991 6.43349 6.54583 6.84872 7.06917 7.15714 7.43142 7.44065 7.69881 7.78416 7.92374 8.25876 8.37867 8.65443 8.74846 9.07590 9.63672 11.07371 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002265 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.608348 B =12358.794006 C =13350.610195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.004 0.996 5 C -0.493 4.493 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.663 5.663 14 C 0.077 3.923 15 H 0.109 0.891 16 C -0.175 4.175 17 C 0.521 3.479 18 O -0.518 6.518 19 N -0.739 5.739 20 C 0.156 3.844 21 C -0.063 4.063 22 C -0.115 4.115 23 C -0.061 4.061 24 C -0.129 4.129 25 C 0.528 3.472 26 O -0.515 6.515 27 O -0.512 6.512 28 C -0.055 4.055 29 C -0.113 4.113 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.259 0.741 36 H 0.324 0.676 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.415 0.585 46 H 0.139 0.861 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 20.654 8.806 22.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.022 0.978 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.038 4.038 15 H 0.127 0.873 16 C -0.234 4.234 17 C 0.307 3.693 18 O -0.391 6.391 19 N -0.394 5.394 20 C 0.032 3.968 21 C -0.063 4.063 22 C -0.133 4.133 23 C -0.079 4.079 24 C -0.130 4.130 25 C 0.373 3.627 26 O -0.404 6.404 27 O -0.323 6.323 28 C -0.073 4.073 29 C -0.132 4.132 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.232 0.768 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.274 0.726 46 H 0.157 0.843 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.158 19.737 9.696 22.379 hybrid contribution 0.053 1.071 -1.148 1.571 sum -4.105 20.807 8.548 22.866 Atomic orbital electron populations 1.21887 0.99582 0.99802 0.99482 1.21758 0.91255 1.00192 1.03218 1.19219 0.95509 0.90093 0.83827 0.97799 1.21275 0.91294 1.36523 1.04085 0.91999 1.24947 0.98072 0.95616 0.95867 1.69878 1.34572 1.39598 1.09558 0.86509 0.85874 0.77681 0.77771 1.19774 1.21117 1.21270 1.60328 1.36372 0.99682 1.33016 1.21358 0.97362 0.92248 0.92822 0.87346 1.22467 0.97426 1.01440 1.02114 1.21167 0.75512 0.80857 0.91769 1.90657 1.46526 1.63247 1.38622 1.46134 1.75458 1.07119 1.10695 1.20187 1.02958 0.86379 0.87228 1.20329 0.93531 0.95838 0.96616 1.21207 0.98873 0.93723 0.99493 1.21490 0.97034 0.94452 0.94917 1.19080 0.95807 0.89141 1.08971 1.20934 0.80890 0.88561 0.72364 1.90898 1.30849 1.71261 1.47434 1.84560 1.38259 1.27141 1.82390 1.21274 0.97610 0.93825 0.94620 1.21113 0.97944 0.93717 1.00416 0.94570 0.93911 0.94353 0.93878 0.88157 0.93145 0.85702 0.92711 0.92613 0.91234 0.76758 0.90521 0.90358 0.84500 0.84180 0.72598 0.84305 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.63 37.16 0.36 -2.48 16 2 C -0.13 -2.92 5.37 -26.73 -0.14 -3.07 16 3 C 0.22 5.30 1.83 -68.87 -0.13 5.17 16 4 H 0.00 0.11 7.19 -51.93 -0.37 -0.26 16 5 C -0.49 -13.37 8.46 -34.44 -0.29 -13.67 16 6 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.92 11.29 55.43 0.63 -24.29 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.66 -14.04 5.53 -102.17 -0.57 -14.61 16 14 C 0.08 1.35 2.80 -68.86 -0.19 1.16 16 15 H 0.11 2.05 7.60 -51.93 -0.39 1.65 16 16 C -0.18 -2.45 9.02 37.15 0.33 -2.11 16 17 C 0.52 8.72 7.22 -10.98 -0.08 8.64 16 18 O -0.52 -10.74 16.43 5.56 0.09 -10.65 16 19 N -0.74 -8.88 5.45 -61.48 -0.34 -9.22 16 20 C 0.16 1.61 5.79 -5.20 -0.03 1.58 16 21 C -0.06 -0.52 5.26 -104.53 -0.55 -1.07 16 22 C -0.11 -0.89 9.68 -39.64 -0.38 -1.28 16 23 C -0.06 -0.46 9.62 -39.17 -0.38 -0.84 16 24 C -0.13 -1.10 5.87 -104.99 -0.62 -1.71 16 25 C 0.53 4.67 8.27 34.61 0.29 4.95 16 26 O -0.51 -5.94 17.13 -19.25 -0.33 -6.27 16 27 O -0.51 -3.08 12.68 -40.52 -0.51 -3.59 16 28 C -0.06 -0.45 9.60 -39.17 -0.38 -0.82 16 29 C -0.11 -0.87 9.68 -39.64 -0.38 -1.26 16 30 H 0.04 0.62 6.67 -51.93 -0.35 0.27 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 2.61 5.94 -51.93 -0.31 2.31 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.32 6.48 6.34 -39.29 -0.25 6.23 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.62 7.70 -51.93 -0.40 0.22 16 39 H 0.07 1.06 7.47 -51.93 -0.39 0.67 16 40 H 0.40 3.96 7.97 -40.82 -0.33 3.64 16 41 H 0.08 0.80 8.08 -51.92 -0.42 0.38 16 42 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 43 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.14 0.86 7.61 -52.48 -0.40 0.46 16 45 H 0.42 0.69 9.11 45.56 0.42 1.11 16 46 H 0.14 1.06 7.65 -52.49 -0.40 0.66 16 47 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -33.64 394.99 -8.85 -42.49 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -6.09 Total: 9.32 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.66 Total: -5.40 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.27 Total: -48.12 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.75 Total: -20.52 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.64 -8.85 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.533 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds