Wall clock time and date at job start Tue Mar 31 2020 17:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47289 * 2 1 4 4 H 1.08997 * 109.47087 * 305.64185 * 3 2 1 5 5 C 1.50698 * 109.46995 * 185.64353 * 3 2 1 6 6 H 1.07999 * 119.99734 * 240.00204 * 5 3 2 7 7 C 1.37870 * 120.00180 * 59.99974 * 5 3 2 8 8 N 1.31511 * 120.00009 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00219 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46845 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47284 * 120.00191 * 9 7 5 12 12 H 1.48500 * 109.47065 * 240.00122 * 9 7 5 13 13 N 1.46901 * 109.47068 * 65.64269 * 3 2 1 14 14 C 1.46903 * 111.00097 * 204.30259 * 13 3 2 15 15 H 1.08998 * 109.46861 * 326.26093 * 14 13 3 16 16 C 1.52995 * 109.47064 * 86.26059 * 14 13 3 17 17 C 1.50702 * 109.47046 * 206.25992 * 14 13 3 18 18 O 1.21277 * 120.00008 * 359.97438 * 17 14 13 19 19 N 1.34777 * 119.99966 * 179.97438 * 17 14 13 20 20 C 1.46492 * 120.00193 * 180.02562 * 19 17 14 21 21 C 1.50697 * 109.47638 * 180.02562 * 20 19 17 22 22 C 1.38372 * 119.84826 * 269.73057 * 21 20 19 23 23 C 1.37945 * 120.14678 * 179.72025 * 22 21 20 24 24 C 1.39624 * 119.84980 * 0.56277 * 23 22 21 25 25 C 1.47725 * 120.14814 * 179.68222 * 24 23 22 26 26 O 1.21473 * 119.99876 * 180.02562 * 25 24 23 27 27 O 1.34709 * 120.00144 * 0.02787 * 25 24 23 28 28 C 1.39626 * 119.70057 * 359.71245 * 24 23 22 29 29 C 1.37948 * 119.85135 * 359.97438 * 28 24 23 30 30 H 1.09003 * 109.47077 * 293.71884 * 1 2 3 31 31 H 1.09005 * 109.47151 * 53.71405 * 1 2 3 32 32 H 1.08996 * 109.47520 * 173.71257 * 1 2 3 33 33 H 1.08996 * 109.46682 * 120.00122 * 2 1 3 34 34 H 1.08998 * 109.46850 * 239.99990 * 2 1 3 35 35 H 0.97001 * 120.00167 * 179.97438 * 8 7 5 36 36 H 1.00898 * 110.99819 * 328.25701 * 13 3 2 37 37 H 1.08994 * 109.47346 * 64.80496 * 16 14 13 38 38 H 1.08997 * 109.47227 * 184.80660 * 16 14 13 39 39 H 1.09003 * 109.47085 * 304.80214 * 16 14 13 40 40 H 0.97000 * 119.99572 * 0.02562 * 19 17 14 41 41 H 1.09008 * 109.47082 * 299.99919 * 20 19 17 42 42 H 1.09003 * 109.47231 * 59.99437 * 20 19 17 43 43 H 1.07994 * 119.92257 * 359.97149 * 22 21 20 44 44 H 1.08007 * 120.06996 * 180.27169 * 23 22 21 45 45 H 0.96705 * 116.99940 * 180.02562 * 27 25 24 46 46 H 1.08001 * 120.07761 * 179.97438 * 28 24 23 47 47 H 1.07993 * 119.92968 * 180.02562 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5966 1.9846 -0.8351 5 6 3.5406 1.4447 -0.1397 6 1 4.1540 1.8863 0.6317 7 6 4.1302 0.8829 -1.2522 8 7 3.3831 0.3456 -2.1917 9 14 5.9901 0.8863 -1.4257 10 1 6.5964 1.5469 -0.2420 11 1 6.4812 -0.5120 -1.5174 12 1 6.3711 1.6264 -2.6555 13 7 1.6648 2.0945 1.2617 14 6 1.6003 3.5534 1.1016 15 1 2.3549 3.8737 0.3832 16 6 0.2124 3.9499 0.5943 17 6 1.8580 4.2164 2.4301 18 8 2.0735 3.5403 3.4136 19 7 1.8489 5.5608 2.5254 20 6 2.0999 6.2054 3.8167 21 6 2.0337 7.7019 3.6525 22 6 3.1799 8.4120 3.3418 23 6 3.1252 9.7814 3.1844 24 6 1.9121 10.4522 3.3510 25 6 1.8474 11.9193 3.1910 26 8 0.7906 12.5002 3.3370 27 8 2.9603 12.6130 2.8831 28 6 0.7604 9.7301 3.6702 29 6 0.8279 8.3602 3.8183 30 1 -0.3633 0.4134 0.9409 31 1 -0.3634 0.6082 -0.8284 32 1 -0.3634 -1.0214 -0.1125 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.7979 -0.0493 -2.9746 36 1 0.7911 1.7302 1.6111 37 1 -0.5339 3.7066 1.3504 38 1 0.1911 5.0212 0.3943 39 1 -0.0086 3.4045 -0.3232 40 1 1.6761 6.1015 1.7388 41 1 1.3452 5.8854 4.5353 42 1 3.0886 5.9225 4.1779 43 1 4.1186 7.8925 3.2182 44 1 4.0198 10.3339 2.9376 45 1 2.8685 13.5711 2.7890 46 1 -0.1811 10.2428 3.8008 47 1 -0.0621 7.8004 4.0647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595029388.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:08 Heat of formation + Delta-G solvation = -130.651678 kcal Electronic energy + Delta-G solvation = -27921.614556 eV Core-core repulsion = 23874.921251 eV Total energy + Delta-G solvation = -4046.693305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51829 -40.85850 -39.80173 -38.10542 -37.14544 -35.90854 -34.94980 -33.46085 -32.58816 -32.07940 -30.24836 -28.20761 -27.81770 -25.34845 -24.57136 -23.87563 -23.54126 -21.86358 -21.48212 -21.11913 -19.19685 -18.60091 -18.31918 -18.02959 -17.33461 -16.76410 -16.69423 -16.54894 -16.17437 -15.94274 -15.64933 -15.49705 -15.30533 -14.81066 -14.56252 -14.34830 -14.27225 -14.11492 -13.76040 -13.65202 -13.47748 -13.25245 -13.16575 -12.98796 -12.76345 -12.66733 -12.61222 -12.51651 -12.24624 -12.10320 -11.96251 -11.75296 -11.67388 -11.47883 -10.99441 -10.72381 -10.41547 -10.08249 -10.02026 -10.01447 -8.90951 -8.04812 -6.16236 -0.49486 0.32486 1.38489 1.39961 1.43525 1.54732 1.79455 2.02498 2.25056 2.45735 2.78846 3.20099 3.52661 3.71110 3.73056 3.93050 3.95375 4.03322 4.21825 4.29846 4.34130 4.36524 4.54101 4.60524 4.61970 4.66791 4.72835 4.77577 4.82553 4.92959 5.00927 5.10823 5.15775 5.22879 5.27054 5.28731 5.39642 5.46227 5.46831 5.53936 5.62024 5.76081 5.77413 5.91187 6.36892 6.45193 6.68129 6.91685 6.97504 7.00151 7.40134 7.52900 8.97731 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014806 B = 0.002265 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.608348 B =12358.794006 C =13350.610195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.123 4.123 3 C 0.231 3.769 4 H -0.014 1.014 5 C -0.510 4.510 6 H 0.041 0.959 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.072 3.928 15 H 0.091 0.909 16 C -0.163 4.163 17 C 0.525 3.475 18 O -0.563 6.563 19 N -0.717 5.717 20 C 0.159 3.841 21 C -0.065 4.065 22 C -0.116 4.116 23 C -0.057 4.057 24 C -0.139 4.139 25 C 0.532 3.468 26 O -0.548 6.548 27 O -0.504 6.504 28 C -0.061 4.061 29 C -0.108 4.108 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.070 0.930 35 H 0.260 0.740 36 H 0.331 0.669 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.056 0.944 40 H 0.411 0.589 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.155 0.845 45 H 0.434 0.566 46 H 0.142 0.858 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 22.179 8.952 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.161 4.161 3 C 0.123 3.877 4 H 0.003 0.997 5 C -0.549 4.549 6 H 0.060 0.940 7 C -0.184 4.184 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.308 5.308 14 C -0.042 4.042 15 H 0.109 0.891 16 C -0.223 4.223 17 C 0.311 3.689 18 O -0.440 6.440 19 N -0.372 5.372 20 C 0.036 3.964 21 C -0.065 4.065 22 C -0.134 4.134 23 C -0.075 4.075 24 C -0.141 4.141 25 C 0.378 3.622 26 O -0.441 6.441 27 O -0.318 6.318 28 C -0.079 4.079 29 C -0.126 4.126 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.084 0.916 38 H 0.107 0.893 39 H 0.075 0.925 40 H 0.248 0.752 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.173 0.827 45 H 0.296 0.704 46 H 0.159 0.841 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.391 21.335 9.823 23.894 hybrid contribution 0.173 0.703 -1.175 1.380 sum -4.217 22.038 8.647 24.046 Atomic orbital electron populations 1.21740 0.96077 1.01148 1.00565 1.21603 0.94424 0.99146 1.00976 1.18938 0.93759 0.90583 0.84436 0.99679 1.21464 0.93010 1.36680 1.03752 0.94034 1.25588 1.01869 0.95344 0.95647 1.69982 1.35937 1.39870 1.09806 0.85623 0.81312 0.77646 0.77723 1.20057 1.20848 1.20280 1.60168 1.37113 1.01951 1.31570 1.21394 0.99139 0.90324 0.93317 0.89121 1.22340 0.94982 1.03401 1.01534 1.20921 0.75196 0.82114 0.90637 1.90640 1.49012 1.64608 1.39768 1.45906 1.73485 1.05663 1.12124 1.20219 1.02609 0.87552 0.86062 1.20134 0.94174 0.94445 0.97756 1.21335 0.99053 0.93937 0.99091 1.21614 0.97238 0.94318 0.94319 1.19247 0.96340 0.89260 1.09204 1.20991 0.80831 0.88773 0.71569 1.90887 1.32105 1.71913 1.49171 1.84520 1.36897 1.28818 1.81568 1.21371 0.97793 0.94021 0.94686 1.21222 0.98171 0.93590 0.99663 0.92686 0.93758 0.92668 0.95234 0.91136 0.93027 0.85015 0.91620 0.89268 0.92477 0.75224 0.90304 0.91118 0.83712 0.82705 0.70389 0.84066 0.83154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 9.63 71.98 0.69 -4.39 16 2 C -0.12 -5.79 5.37 30.59 0.16 -5.63 16 3 C 0.23 11.30 1.83 44.17 0.08 11.38 16 4 H -0.01 -0.74 7.19 -2.39 -0.02 -0.76 16 5 C -0.51 -28.36 8.46 25.60 0.22 -28.14 16 6 H 0.04 2.42 7.81 -2.91 -0.02 2.40 16 7 C 0.01 0.77 5.29 84.65 0.45 1.21 16 8 N -0.92 -51.59 11.29 21.44 0.24 -51.35 16 9 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 N -0.68 -28.91 5.53 -477.17 -2.64 -31.55 16 14 C 0.07 2.52 2.80 44.17 0.12 2.65 16 15 H 0.09 3.47 7.60 -2.39 -0.02 3.45 16 16 C -0.16 -4.29 9.02 71.98 0.65 -3.64 16 17 C 0.52 17.24 7.22 87.66 0.63 17.88 16 18 O -0.56 -23.42 16.43 -3.02 -0.05 -23.47 16 19 N -0.72 -16.13 5.45 -466.80 -2.55 -18.67 16 20 C 0.16 3.05 5.79 85.63 0.50 3.54 16 21 C -0.06 -0.95 5.26 -19.80 -0.10 -1.05 16 22 C -0.12 -1.58 9.68 22.23 0.22 -1.36 16 23 C -0.06 -0.74 9.62 22.54 0.22 -0.52 16 24 C -0.14 -2.14 5.87 -20.10 -0.12 -2.25 16 25 C 0.53 8.66 8.27 70.33 0.58 9.24 16 26 O -0.55 -12.22 17.13 19.92 0.34 -11.88 16 27 O -0.50 -5.05 12.68 -56.19 -0.71 -5.76 16 28 C -0.06 -0.89 9.60 22.54 0.22 -0.67 16 29 C -0.11 -1.44 9.68 22.23 0.22 -1.22 16 30 H 0.05 1.81 6.67 -2.39 -0.02 1.79 16 31 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 3.76 5.94 -2.39 -0.01 3.74 16 35 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.33 13.11 6.34 -89.70 -0.57 12.54 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.09 1.72 7.70 -2.39 -0.02 1.70 16 39 H 0.06 1.66 7.47 -2.39 -0.02 1.65 16 40 H 0.41 7.23 7.97 -92.71 -0.74 6.49 16 41 H 0.08 1.53 8.08 -2.38 -0.02 1.51 16 42 H 0.07 1.51 8.08 -2.39 -0.02 1.49 16 43 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 44 H 0.16 1.51 7.61 -2.91 -0.02 1.49 16 45 H 0.43 0.57 9.11 -74.05 -0.67 -0.10 16 46 H 0.14 1.99 7.65 -2.91 -0.02 1.96 16 47 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -73.78 394.99 0.42 -73.35 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: -0.96 Total: 26.17 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 4.73 Total: -2.98 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -4.94 Total: -101.57 kcal Atomic # 8 Polarization: -40.69 SS G_CDS: -0.42 Total: -41.11 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.78 0.42 -73.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595029388.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.298 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds