Wall clock time and date at job start Tue Mar 31 2020 17:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 H 1.09000 * 109.47246 * 306.03820 * 3 2 1 5 5 C 1.50701 * 109.47460 * 186.03933 * 3 2 1 6 6 H 1.08001 * 119.99943 * 245.14669 * 5 3 2 7 7 C 1.37881 * 119.99868 * 65.13891 * 5 3 2 8 8 N 1.31507 * 119.99969 * 194.07524 * 7 5 3 9 9 Si 1.86800 * 119.99766 * 14.07333 * 7 5 3 10 10 H 1.48500 * 109.46634 * 92.86708 * 9 7 5 11 11 H 1.48495 * 109.46915 * 212.86221 * 9 7 5 12 12 H 1.48494 * 109.47263 * 332.86965 * 9 7 5 13 13 N 1.46898 * 109.47185 * 66.03952 * 3 2 1 14 14 C 1.46904 * 111.00339 * 207.91449 * 13 3 2 15 15 H 1.09004 * 109.46833 * 38.93332 * 14 13 3 16 16 C 1.52999 * 109.47037 * 278.93643 * 14 13 3 17 17 C 1.52999 * 109.47560 * 158.93338 * 14 13 3 18 18 C 1.50697 * 109.47037 * 293.81513 * 17 14 13 19 19 O 1.21291 * 120.00147 * 3.89477 * 18 17 14 20 20 N 1.34776 * 119.99992 * 183.89983 * 18 17 14 21 21 C 1.39957 * 120.00163 * 184.56366 * 20 18 17 22 22 C 1.39002 * 119.99603 * 144.20948 * 21 20 18 23 23 C 1.38221 * 120.23213 * 179.72504 * 22 21 20 24 24 C 1.38009 * 120.22675 * 0.55164 * 23 22 21 25 25 C 1.39636 * 119.99147 * 359.72436 * 24 23 22 26 26 C 1.47741 * 120.11464 * 180.02562 * 25 24 23 27 27 O 1.21472 * 120.00020 * 179.97438 * 26 25 24 28 28 O 1.34708 * 120.00025 * 359.97438 * 26 25 24 29 29 C 1.38582 * 119.99963 * 324.48704 * 21 20 18 30 30 H 1.08994 * 109.46805 * 304.10348 * 1 2 3 31 31 H 1.09006 * 109.46987 * 64.10270 * 1 2 3 32 32 H 1.08996 * 109.47169 * 184.09833 * 1 2 3 33 33 H 1.08995 * 109.46998 * 240.00221 * 2 1 3 34 34 H 1.09004 * 109.47097 * 120.00018 * 2 1 3 35 35 H 0.97003 * 120.00359 * 180.02562 * 8 7 5 36 36 H 1.00904 * 111.00350 * 83.96009 * 13 3 2 37 37 H 1.09004 * 109.47055 * 299.99553 * 16 14 13 38 38 H 1.09004 * 109.47380 * 59.99364 * 16 14 13 39 39 H 1.08999 * 109.47485 * 179.97438 * 16 14 13 40 40 H 1.08994 * 109.47313 * 173.80805 * 17 14 13 41 41 H 1.09011 * 109.46709 * 53.81030 * 17 14 13 42 42 H 0.96998 * 119.99848 * 4.56083 * 20 18 17 43 43 H 1.08000 * 119.88299 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.88941 * 180.25442 * 23 22 21 45 45 H 1.08004 * 120.00836 * 179.74911 * 24 23 22 46 46 H 0.96706 * 116.99903 * 179.97438 * 28 26 25 47 47 H 1.08007 * 120.10967 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8310 5 6 3.5396 1.4452 -0.1495 6 1 4.1618 1.8093 0.6547 7 6 4.1173 0.9827 -1.3129 8 7 5.4060 0.7231 -1.3491 9 14 3.0693 0.7248 -2.8376 10 1 3.1022 1.9514 -3.6740 11 1 3.6034 -0.4205 -3.6174 12 1 1.6693 0.4387 -2.4334 13 7 1.6730 2.0916 1.2656 14 6 1.5238 3.5424 1.0894 15 1 1.0444 3.7446 0.1315 16 6 2.9029 4.2042 1.1192 17 6 0.6622 4.1077 2.2203 18 6 -0.7407 3.5706 2.0995 19 8 -1.0065 2.7563 1.2409 20 7 -1.7000 3.9953 2.9456 21 6 -2.9782 3.4274 2.8962 22 6 -3.7025 3.2429 4.0681 23 6 -4.9675 2.6878 4.0244 24 6 -5.5157 2.3023 2.8179 25 6 -4.7941 2.4780 1.6354 26 6 -5.3786 2.0668 0.3423 27 8 -4.7492 2.2211 -0.6851 28 8 -6.6094 1.5209 0.3027 29 6 -3.5193 3.0437 1.6794 30 1 -0.3633 0.5762 0.8509 31 1 -0.3633 0.4489 -0.9245 32 1 -0.3633 -1.0250 0.0734 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.8125 0.3981 -2.1677 36 1 2.3459 1.8825 1.9878 37 1 3.3823 4.0020 2.0771 38 1 3.5168 3.8015 0.3135 39 1 2.7923 5.2806 0.9880 40 1 0.6420 5.1954 2.1528 41 1 1.0834 3.8110 3.1810 42 1 -1.5045 4.6945 3.5889 43 1 -3.2769 3.5381 5.0158 44 1 -5.5270 2.5507 4.9379 45 1 -6.5029 1.8651 2.7882 46 1 -6.9498 1.2680 -0.5664 47 1 -2.9564 3.1825 0.7682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:32 Heat of formation + Delta-G solvation = -98.769360 kcal Electronic energy + Delta-G solvation = -29378.232280 eV Core-core repulsion = 25332.921496 eV Total energy + Delta-G solvation = -4045.310784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81760 -40.01150 -38.44115 -36.80809 -36.22597 -34.71543 -33.68420 -31.83388 -31.48909 -30.42235 -29.04459 -27.19920 -26.34063 -25.03629 -23.14051 -22.27026 -21.49279 -20.90251 -19.88835 -19.61434 -18.43273 -17.88841 -16.91516 -16.71734 -16.40267 -15.87794 -15.77682 -15.61750 -15.01709 -14.74610 -14.18135 -14.04008 -13.76125 -13.50751 -13.36296 -13.11774 -12.82319 -12.61362 -12.51597 -12.16899 -12.04863 -11.80659 -11.76999 -11.68576 -11.38699 -11.24104 -11.08268 -10.77596 -10.63335 -10.60460 -10.42327 -10.22051 -10.06790 -9.59377 -9.56108 -9.30459 -9.21335 -9.03975 -8.38251 -8.32956 -7.17752 -6.07951 -4.02910 0.47548 1.11742 2.34477 2.73638 2.84839 3.10536 3.34232 3.44110 3.53491 3.60878 4.48319 4.58338 4.67398 4.85054 4.91465 4.97609 5.07889 5.20793 5.25772 5.28786 5.38253 5.61280 5.70388 5.86810 5.98389 6.03970 6.06146 6.08821 6.11836 6.25095 6.30562 6.32233 6.39621 6.43816 6.64505 6.66335 6.77357 6.97490 7.06733 7.08811 7.34046 7.38789 7.41397 7.58637 7.70161 7.73502 8.18786 8.36782 8.49048 8.63329 8.98922 9.60449 11.04439 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.003396 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.939845 B = 8243.613727 C = 9612.332671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C 0.195 3.805 4 H 0.027 0.973 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.859 3.141 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.665 5.665 14 C 0.106 3.894 15 H 0.076 0.924 16 C -0.183 4.183 17 C -0.126 4.126 18 C 0.510 3.490 19 O -0.474 6.474 20 N -0.688 5.688 21 C 0.148 3.852 22 C -0.115 4.115 23 C -0.116 4.116 24 C -0.085 4.085 25 C -0.110 4.110 26 C 0.524 3.476 27 O -0.502 6.502 28 O -0.515 6.515 29 C -0.058 4.058 30 H 0.074 0.926 31 H 0.033 0.967 32 H 0.021 0.979 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.262 0.738 36 H 0.329 0.671 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.408 0.592 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.414 0.586 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.694 8.385 12.751 26.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C 0.086 3.914 4 H 0.045 0.955 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.686 3.314 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.170 1.170 13 N -0.293 5.293 14 C -0.006 4.006 15 H 0.094 0.906 16 C -0.242 4.242 17 C -0.166 4.166 18 C 0.297 3.703 19 O -0.344 6.344 20 N -0.335 5.335 21 C 0.053 3.947 22 C -0.135 4.135 23 C -0.135 4.135 24 C -0.104 4.104 25 C -0.112 4.112 26 C 0.368 3.632 27 O -0.390 6.390 28 O -0.327 6.327 29 C -0.078 4.078 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.244 0.756 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.154 0.846 46 H 0.272 0.728 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -21.982 7.725 11.990 26.204 hybrid contribution 0.552 0.224 -1.191 1.332 sum -21.430 7.949 10.799 25.279 Atomic orbital electron populations 1.21748 0.97469 0.98545 1.02070 1.21759 0.93704 0.98950 0.99919 1.19420 0.93681 0.90869 0.87464 0.95533 1.21781 0.90793 1.43221 1.02558 0.90848 1.24929 0.94625 0.94043 0.98921 1.69989 1.11336 1.44270 1.27633 0.87246 0.82864 0.77755 0.83504 1.20917 1.21565 1.17002 1.60754 1.52451 1.06176 1.09957 1.21157 0.93282 0.89847 0.96268 0.90616 1.22646 0.98772 0.99287 1.03485 1.21816 0.91284 1.00725 1.02817 1.21100 0.86759 0.81643 0.80757 1.90779 1.81234 1.30169 1.32232 1.43804 1.08862 1.40810 1.40045 1.17574 0.85885 0.98347 0.92924 1.21222 0.95537 0.99890 0.96886 1.20907 0.95198 0.99396 0.97954 1.21385 0.99917 0.97742 0.91313 1.18879 0.95619 1.05950 0.90767 1.20889 0.78823 0.74046 0.89476 1.90951 1.61006 1.51418 1.35636 1.84530 1.33019 1.74381 1.40787 1.21460 0.92444 0.94972 0.98931 0.90680 0.94751 0.96030 0.93605 0.93456 0.92859 0.85462 0.93434 0.89147 0.94197 0.89465 0.88862 0.75602 0.85086 0.84892 0.84576 0.72771 0.82603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.85 37.16 0.37 -2.72 16 2 C -0.10 -2.47 4.85 -26.73 -0.13 -2.60 16 3 C 0.19 4.62 1.50 -68.87 -0.10 4.52 16 4 H 0.03 0.68 6.08 -51.93 -0.32 0.37 16 5 C -0.55 -14.71 7.10 -34.44 -0.24 -14.95 16 6 H 0.07 2.10 7.31 -52.49 -0.38 1.72 16 7 C 0.08 2.22 5.34 -17.82 -0.10 2.13 16 8 N -0.89 -27.15 13.96 55.43 0.77 -26.38 16 9 Si 0.86 21.94 25.76 -169.99 -4.38 17.56 16 10 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.25 -6.15 5.45 56.52 0.31 -5.84 16 13 N -0.67 -13.17 4.61 -100.95 -0.47 -13.64 16 14 C 0.11 1.80 2.12 -67.71 -0.14 1.65 16 15 H 0.08 1.45 7.32 -51.93 -0.38 1.07 16 16 C -0.18 -3.05 8.69 37.16 0.32 -2.73 16 17 C -0.13 -1.53 5.37 -27.88 -0.15 -1.68 16 18 C 0.51 6.96 7.56 -10.99 -0.08 6.88 16 19 O -0.47 -8.62 11.10 5.55 0.06 -8.56 16 20 N -0.69 -6.91 5.33 -9.89 -0.05 -6.96 16 21 C 0.15 1.65 6.29 -83.74 -0.53 1.12 16 22 C -0.11 -0.96 9.96 -39.30 -0.39 -1.35 16 23 C -0.12 -0.90 10.02 -39.67 -0.40 -1.29 16 24 C -0.08 -0.78 9.61 -39.14 -0.38 -1.16 16 25 C -0.11 -1.35 5.87 -105.01 -0.62 -1.97 16 26 C 0.52 6.73 8.27 34.61 0.29 7.02 16 27 O -0.50 -8.38 17.13 -19.24 -0.33 -8.71 16 28 O -0.51 -4.55 12.68 -40.51 -0.51 -5.07 16 29 C -0.06 -0.79 8.24 -38.97 -0.32 -1.11 16 30 H 0.07 1.65 5.90 -51.93 -0.31 1.35 16 31 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.14 4.93 -51.93 -0.26 0.88 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.33 6.50 8.13 -39.29 -0.32 6.18 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 1.89 6.04 -51.93 -0.31 1.58 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 42 H 0.41 2.53 8.82 -40.82 -0.36 2.17 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.14 1.00 7.60 -52.48 -0.40 0.60 16 46 H 0.41 1.89 9.11 45.56 0.42 2.30 16 47 H 0.16 2.62 5.85 -52.48 -0.31 2.31 16 LS Contribution 379.41 15.07 5.72 5.72 Total: -1.00 -35.48 379.41 -7.75 -43.23 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -5.96 Total: 11.05 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.60 Total: -8.24 kcal Atomic # 7 Polarization: -47.24 SS G_CDS: 0.26 Total: -46.98 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.78 Total: -22.33 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.38 Total: 17.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.48 -7.75 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.537 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds