Wall clock time and date at job start Tue Mar 31 2020 17:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47101 * 2 1 4 4 H 1.09000 * 109.47246 * 306.03820 * 3 2 1 5 5 C 1.50701 * 109.47460 * 186.03933 * 3 2 1 6 6 H 1.08001 * 119.99943 * 245.14669 * 5 3 2 7 7 C 1.37881 * 119.99868 * 65.13891 * 5 3 2 8 8 N 1.31507 * 119.99969 * 194.07524 * 7 5 3 9 9 Si 1.86800 * 119.99766 * 14.07333 * 7 5 3 10 10 H 1.48500 * 109.46634 * 92.86708 * 9 7 5 11 11 H 1.48495 * 109.46915 * 212.86221 * 9 7 5 12 12 H 1.48494 * 109.47263 * 332.86965 * 9 7 5 13 13 N 1.46898 * 109.47185 * 66.03952 * 3 2 1 14 14 C 1.46904 * 111.00339 * 207.91449 * 13 3 2 15 15 H 1.09004 * 109.46833 * 38.93332 * 14 13 3 16 16 C 1.52999 * 109.47037 * 278.93643 * 14 13 3 17 17 C 1.52999 * 109.47560 * 158.93338 * 14 13 3 18 18 C 1.50697 * 109.47037 * 293.81513 * 17 14 13 19 19 O 1.21291 * 120.00147 * 3.89477 * 18 17 14 20 20 N 1.34776 * 119.99992 * 183.89983 * 18 17 14 21 21 C 1.39957 * 120.00163 * 184.56366 * 20 18 17 22 22 C 1.39002 * 119.99603 * 144.20948 * 21 20 18 23 23 C 1.38221 * 120.23213 * 179.72504 * 22 21 20 24 24 C 1.38009 * 120.22675 * 0.55164 * 23 22 21 25 25 C 1.39636 * 119.99147 * 359.72436 * 24 23 22 26 26 C 1.47741 * 120.11464 * 180.02562 * 25 24 23 27 27 O 1.21472 * 120.00020 * 179.97438 * 26 25 24 28 28 O 1.34708 * 120.00025 * 359.97438 * 26 25 24 29 29 C 1.38582 * 119.99963 * 324.48704 * 21 20 18 30 30 H 1.08994 * 109.46805 * 304.10348 * 1 2 3 31 31 H 1.09006 * 109.46987 * 64.10270 * 1 2 3 32 32 H 1.08996 * 109.47169 * 184.09833 * 1 2 3 33 33 H 1.08995 * 109.46998 * 240.00221 * 2 1 3 34 34 H 1.09004 * 109.47097 * 120.00018 * 2 1 3 35 35 H 0.97003 * 120.00359 * 180.02562 * 8 7 5 36 36 H 1.00904 * 111.00350 * 83.96009 * 13 3 2 37 37 H 1.09004 * 109.47055 * 299.99553 * 16 14 13 38 38 H 1.09004 * 109.47380 * 59.99364 * 16 14 13 39 39 H 1.08999 * 109.47485 * 179.97438 * 16 14 13 40 40 H 1.08994 * 109.47313 * 173.80805 * 17 14 13 41 41 H 1.09011 * 109.46709 * 53.81030 * 17 14 13 42 42 H 0.96998 * 119.99848 * 4.56083 * 20 18 17 43 43 H 1.08000 * 119.88299 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.88941 * 180.25442 * 23 22 21 45 45 H 1.08004 * 120.00836 * 179.74911 * 24 23 22 46 46 H 0.96706 * 116.99903 * 179.97438 * 28 26 25 47 47 H 1.08007 * 120.10967 * 359.97438 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5911 1.9866 -0.8310 5 6 3.5396 1.4452 -0.1495 6 1 4.1618 1.8093 0.6547 7 6 4.1173 0.9827 -1.3129 8 7 5.4060 0.7231 -1.3491 9 14 3.0693 0.7248 -2.8376 10 1 3.1022 1.9514 -3.6740 11 1 3.6034 -0.4205 -3.6174 12 1 1.6693 0.4387 -2.4334 13 7 1.6730 2.0916 1.2656 14 6 1.5238 3.5424 1.0894 15 1 1.0444 3.7446 0.1315 16 6 2.9029 4.2042 1.1192 17 6 0.6622 4.1077 2.2203 18 6 -0.7407 3.5706 2.0995 19 8 -1.0065 2.7563 1.2409 20 7 -1.7000 3.9953 2.9456 21 6 -2.9782 3.4274 2.8962 22 6 -3.7025 3.2429 4.0681 23 6 -4.9675 2.6878 4.0244 24 6 -5.5157 2.3023 2.8179 25 6 -4.7941 2.4780 1.6354 26 6 -5.3786 2.0668 0.3423 27 8 -4.7492 2.2211 -0.6851 28 8 -6.6094 1.5209 0.3027 29 6 -3.5193 3.0437 1.6794 30 1 -0.3633 0.5762 0.8509 31 1 -0.3633 0.4489 -0.9245 32 1 -0.3633 -1.0250 0.0734 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 5.8125 0.3981 -2.1677 36 1 2.3459 1.8825 1.9878 37 1 3.3823 4.0020 2.0771 38 1 3.5168 3.8015 0.3135 39 1 2.7923 5.2806 0.9880 40 1 0.6420 5.1954 2.1528 41 1 1.0834 3.8110 3.1810 42 1 -1.5045 4.6945 3.5889 43 1 -3.2769 3.5381 5.0158 44 1 -5.5270 2.5507 4.9379 45 1 -6.5029 1.8651 2.7882 46 1 -6.9498 1.2680 -0.5664 47 1 -2.9564 3.1825 0.7682 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030062.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:31 Heat of formation + Delta-G solvation = -125.804994 kcal Electronic energy + Delta-G solvation = -29379.404633 eV Core-core repulsion = 25332.921496 eV Total energy + Delta-G solvation = -4046.483137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71125 -40.99533 -39.41515 -38.35722 -37.14136 -35.68771 -35.33908 -33.94410 -32.25679 -31.52060 -30.43714 -28.40784 -28.26750 -25.88236 -24.31519 -23.95829 -22.35503 -22.01598 -21.53967 -21.01432 -19.31731 -18.88511 -18.75816 -17.88125 -17.22513 -17.07489 -16.74785 -16.71011 -16.45212 -15.90973 -15.64949 -15.30389 -14.86498 -14.79245 -14.64589 -14.41580 -14.35236 -14.11832 -13.78494 -13.67183 -13.33556 -13.05525 -12.84815 -12.84081 -12.67776 -12.66043 -12.61049 -12.59491 -12.22261 -12.04267 -11.76785 -11.69996 -11.49935 -11.33927 -11.28957 -11.03903 -10.60109 -10.54366 -10.01933 -9.14251 -8.85999 -8.32012 -6.27693 -0.33196 0.34073 1.25925 1.32368 1.45244 1.46362 1.87059 1.94732 2.26115 2.32703 2.83195 3.03401 3.62052 3.86991 3.94477 4.04817 4.08805 4.19036 4.25779 4.42127 4.47113 4.48738 4.57122 4.60798 4.71064 4.75199 4.80646 4.86159 4.93829 5.01866 5.06577 5.17364 5.27864 5.29200 5.31733 5.36903 5.42707 5.49375 5.52982 5.54917 5.60358 5.64113 5.76948 5.99198 6.20223 6.49358 6.61815 6.75915 6.91689 6.98494 7.39012 7.43633 8.83262 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013783 B = 0.003396 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.939845 B = 8243.613727 C = 9612.332671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.204 3.796 4 H 0.007 0.993 5 C -0.528 4.528 6 H 0.051 0.949 7 C 0.028 3.972 8 N -0.938 5.938 9 Si 0.909 3.091 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.242 1.242 13 N -0.658 5.658 14 C 0.103 3.897 15 H 0.046 0.954 16 C -0.173 4.173 17 C -0.113 4.113 18 C 0.506 3.494 19 O -0.528 6.528 20 N -0.668 5.668 21 C 0.131 3.869 22 C -0.098 4.098 23 C -0.106 4.106 24 C -0.075 4.075 25 C -0.136 4.136 26 C 0.526 3.474 27 O -0.556 6.556 28 O -0.499 6.499 29 C -0.088 4.088 30 H 0.074 0.926 31 H 0.018 0.982 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.048 0.952 35 H 0.262 0.738 36 H 0.330 0.670 37 H 0.060 0.940 38 H 0.040 0.960 39 H 0.069 0.931 40 H 0.126 0.874 41 H 0.119 0.881 42 H 0.429 0.571 43 H 0.169 0.831 44 H 0.175 0.825 45 H 0.158 0.842 46 H 0.432 0.568 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.306 9.297 16.319 30.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.142 4.142 3 C 0.094 3.906 4 H 0.025 0.975 5 C -0.567 4.567 6 H 0.069 0.931 7 C -0.170 4.170 8 N -0.578 5.578 9 Si 0.735 3.265 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.165 1.165 13 N -0.286 5.286 14 C -0.009 4.009 15 H 0.064 0.936 16 C -0.232 4.232 17 C -0.153 4.153 18 C 0.294 3.706 19 O -0.402 6.402 20 N -0.317 5.317 21 C 0.036 3.964 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.094 4.094 25 C -0.138 4.138 26 C 0.372 3.628 27 O -0.449 6.449 28 O -0.312 6.312 29 C -0.108 4.108 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.147 0.853 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.088 0.912 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.269 0.731 43 H 0.186 0.814 44 H 0.192 0.808 45 H 0.175 0.825 46 H 0.294 0.706 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.653 8.672 15.610 30.441 hybrid contribution 1.254 -0.005 -2.171 2.507 sum -23.399 8.668 13.440 28.342 Atomic orbital electron populations 1.21582 0.95948 0.99555 1.01246 1.21696 0.94903 0.98378 0.99224 1.19187 0.91162 0.91380 0.88878 0.97539 1.22026 0.92348 1.40979 1.01358 0.93104 1.25559 0.95409 0.94608 1.01446 1.70084 1.12828 1.46507 1.28348 0.86438 0.81720 0.77590 0.80716 1.20817 1.21307 1.16535 1.60743 1.51776 1.08215 1.07863 1.21208 0.94161 0.88200 0.97285 0.93560 1.22473 0.97652 1.00886 1.02165 1.21696 0.89450 1.02606 1.01532 1.21354 0.87760 0.81016 0.80420 1.90783 1.82137 1.32797 1.34483 1.43501 1.07954 1.40780 1.39460 1.17747 0.86364 0.99220 0.93089 1.21642 0.95239 0.97886 0.96997 1.21426 0.94950 0.97344 0.98701 1.21691 1.00374 0.96672 0.90679 1.19000 0.95807 1.07398 0.91606 1.21197 0.79209 0.73087 0.89284 1.90924 1.62566 1.53946 1.37435 1.84482 1.31096 1.73359 1.42292 1.21256 0.93360 0.97579 0.98643 0.90714 0.96286 0.94097 0.95092 0.93281 0.92851 0.85324 0.92118 0.94054 0.91171 0.85605 0.86313 0.73097 0.81351 0.80751 0.82466 0.70644 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.56 9.85 71.98 0.71 -4.85 16 2 C -0.10 -4.94 4.85 30.59 0.15 -4.79 16 3 C 0.20 9.93 1.50 44.17 0.07 10.00 16 4 H 0.01 0.35 6.08 -2.39 -0.01 0.34 16 5 C -0.53 -29.40 7.10 25.60 0.18 -29.21 16 6 H 0.05 3.02 7.31 -2.91 -0.02 3.00 16 7 C 0.03 1.67 5.34 84.66 0.45 2.12 16 8 N -0.94 -58.60 13.96 21.45 0.30 -58.30 16 9 Si 0.91 46.74 25.76 68.60 1.77 48.50 16 10 H -0.28 -14.31 7.11 99.48 0.71 -13.61 16 11 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 12 H -0.24 -12.15 5.45 99.48 0.54 -11.61 16 13 N -0.66 -26.23 4.61 -473.31 -2.18 -28.42 16 14 C 0.10 3.45 2.12 44.91 0.10 3.54 16 15 H 0.05 1.83 7.32 -2.39 -0.02 1.82 16 16 C -0.17 -5.66 8.69 71.98 0.63 -5.04 16 17 C -0.11 -2.46 5.37 29.85 0.16 -2.29 16 18 C 0.51 13.28 7.56 87.66 0.66 13.94 16 19 O -0.53 -19.75 11.10 -3.06 -0.03 -19.79 16 20 N -0.67 -11.89 5.33 -303.60 -1.62 -13.51 16 21 C 0.13 2.68 6.29 38.11 0.24 2.91 16 22 C -0.10 -1.20 9.96 22.45 0.22 -0.98 16 23 C -0.11 -1.13 10.02 22.21 0.22 -0.91 16 24 C -0.08 -1.17 9.61 22.55 0.22 -0.95 16 25 C -0.14 -3.32 5.87 -20.11 -0.12 -3.44 16 26 C 0.53 13.95 8.27 70.33 0.58 14.53 16 27 O -0.56 -20.00 17.13 19.93 0.34 -19.66 16 28 O -0.50 -8.38 12.68 -56.17 -0.71 -9.09 16 29 C -0.09 -2.46 8.24 22.67 0.19 -2.28 16 30 H 0.07 3.33 5.90 -2.39 -0.01 3.32 16 31 H 0.02 0.85 8.14 -2.38 -0.02 0.84 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.54 4.93 -2.39 -0.01 1.53 16 34 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.33 12.97 8.13 -89.69 -0.73 12.24 16 37 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.04 1.76 6.04 -2.38 -0.01 1.75 16 39 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.43 3.65 8.82 -92.71 -0.82 2.83 16 43 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 44 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.16 1.72 7.60 -2.91 -0.02 1.70 16 46 H 0.43 3.61 9.11 -74.05 -0.67 2.94 16 47 H 0.11 4.17 5.85 -2.91 -0.02 4.15 16 Total: -1.00 -84.34 379.41 1.16 -83.18 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -1.35 Total: 24.77 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.66 Total: -7.68 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -3.50 Total: -100.23 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.40 Total: -48.54 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 1.77 Total: 48.50 kcal Total: -84.34 1.16 -83.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030062.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.624 kcal (2) G-P(sol) polarization free energy of solvation -84.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds