Wall clock time and date at job start Tue Mar 31 2020 17:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47365 * 2 1 4 4 H 1.09001 * 109.47024 * 305.05991 * 3 2 1 5 5 C 1.50699 * 109.47123 * 185.05876 * 3 2 1 6 6 H 1.08003 * 119.99964 * 239.99682 * 5 3 2 7 7 C 1.37882 * 120.00079 * 59.99893 * 5 3 2 8 8 N 1.31517 * 119.99414 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47245 * 60.00575 * 9 7 5 11 11 H 1.48503 * 109.46712 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47414 * 299.99660 * 9 7 5 13 13 N 1.46904 * 109.47161 * 65.05841 * 3 2 1 14 14 C 1.46891 * 111.00141 * 210.91365 * 13 3 2 15 15 H 1.09007 * 109.46902 * 322.14912 * 14 13 3 16 16 C 1.52997 * 109.47325 * 82.14405 * 14 13 3 17 17 C 1.52999 * 109.47309 * 202.14707 * 14 13 3 18 18 C 1.50702 * 109.46845 * 65.00043 * 17 14 13 19 19 O 1.21285 * 120.00332 * 0.02562 * 18 17 14 20 20 N 1.34778 * 119.99933 * 180.02562 * 18 17 14 21 21 C 1.39959 * 120.00298 * 185.11562 * 20 18 17 22 22 C 1.38996 * 119.99687 * 213.09878 * 21 20 18 23 23 C 1.38222 * 120.23051 * 179.72711 * 22 21 20 24 24 C 1.38012 * 120.22551 * 0.54294 * 23 22 21 25 25 C 1.39628 * 119.99178 * 359.73357 * 24 23 22 26 26 C 1.47741 * 120.11435 * 180.02562 * 25 24 23 27 27 O 1.21462 * 119.99927 * 179.97438 * 26 25 24 28 28 O 1.34714 * 120.00092 * 359.96787 * 26 25 24 29 29 C 1.38576 * 119.99128 * 33.37131 * 21 20 18 30 30 H 1.08994 * 109.47266 * 184.04922 * 1 2 3 31 31 H 1.08997 * 109.46744 * 304.05223 * 1 2 3 32 32 H 1.09005 * 109.46813 * 64.04599 * 1 2 3 33 33 H 1.09000 * 109.47049 * 239.99769 * 2 1 3 34 34 H 1.09002 * 109.46598 * 120.00006 * 2 1 3 35 35 H 0.97005 * 119.99426 * 180.02562 * 8 7 5 36 36 H 1.00905 * 110.99963 * 334.86941 * 13 3 2 37 37 H 1.09008 * 109.46767 * 55.04728 * 16 14 13 38 38 H 1.08995 * 109.47841 * 295.04840 * 16 14 13 39 39 H 1.09004 * 109.47631 * 175.04528 * 16 14 13 40 40 H 1.09002 * 109.47200 * 184.99939 * 17 14 13 41 41 H 1.08998 * 109.47010 * 304.99939 * 17 14 13 42 42 H 0.97004 * 120.00064 * 5.11686 * 20 18 17 43 43 H 1.07999 * 119.88464 * 359.97143 * 22 21 20 44 44 H 1.07993 * 119.88659 * 180.27620 * 23 22 21 45 45 H 1.07997 * 120.00157 * 179.70503 * 24 23 22 46 46 H 0.96693 * 116.99607 * 179.97438 * 28 26 25 47 47 H 1.07997 * 120.11908 * 359.97328 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9818 -0.8412 5 6 3.5419 1.4442 -0.1253 6 1 4.1479 1.8886 0.6504 7 6 4.1422 0.8787 -1.2302 8 7 3.4040 0.3381 -2.1750 9 14 6.0036 0.8815 -1.3858 10 1 6.5973 0.1471 -0.2398 11 1 6.3952 0.2184 -2.6555 12 1 6.4982 2.2817 -1.3862 13 7 1.6527 2.0988 1.2558 14 6 1.4373 3.5377 1.0532 15 1 2.1749 3.9196 0.3472 16 6 0.0311 3.7695 0.4968 17 6 1.5840 4.2685 2.3893 18 6 3.0043 4.1429 2.8773 19 8 3.8191 3.5296 2.2208 20 7 3.3691 4.7120 4.0433 21 6 4.7097 4.6878 4.4446 22 6 5.0294 4.6075 5.7949 23 6 6.3517 4.5776 6.1964 24 6 7.3637 4.6385 5.2599 25 6 7.0531 4.7251 3.9014 26 6 8.1342 4.7899 2.8965 27 8 7.8617 4.8647 1.7152 28 8 9.4223 4.7661 3.2904 29 6 5.7180 4.7495 3.4961 30 1 -0.3633 -1.0250 0.0726 31 1 -0.3633 0.5754 0.8514 32 1 -0.3633 0.4498 -0.9241 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8264 -0.0602 -2.9522 36 1 0.8343 1.6632 1.6540 37 1 -0.7022 3.3100 1.1596 38 1 -0.0456 3.3233 -0.4947 39 1 -0.1610 4.8404 0.4291 40 1 1.3374 5.3219 2.2563 41 1 0.9079 3.8267 3.1212 42 1 2.7025 5.1384 4.6043 43 1 4.2419 4.5644 6.5328 44 1 6.5938 4.5106 7.2467 45 1 8.3956 4.6196 5.5779 46 1 10.0943 4.8104 2.5966 47 1 5.4715 4.8160 2.4467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:35 Heat of formation + Delta-G solvation = -97.574848 kcal Electronic energy + Delta-G solvation = -29461.189815 eV Core-core repulsion = 25415.930829 eV Total energy + Delta-G solvation = -4045.258986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.64011 -39.82645 -38.28066 -36.73782 -36.05502 -34.52683 -33.63296 -31.47331 -31.33326 -30.20273 -28.83840 -27.36508 -25.89466 -24.88414 -23.11192 -22.57726 -21.34460 -20.74868 -19.69289 -19.44953 -18.25934 -17.71241 -16.75090 -16.23501 -15.97032 -15.72512 -15.60120 -15.46898 -14.81292 -14.59660 -14.11328 -13.98589 -13.68095 -13.34591 -13.29560 -12.99907 -12.91745 -12.73432 -12.34026 -12.02668 -11.83169 -11.70871 -11.62368 -11.58212 -11.52031 -11.19856 -10.85496 -10.63450 -10.59610 -10.47244 -10.31626 -10.26301 -9.72644 -9.54981 -9.44497 -9.33129 -9.06370 -8.83836 -8.11759 -8.10332 -7.02469 -5.72988 -3.71966 0.64101 1.27733 2.51755 2.89728 3.09530 3.26393 3.54698 3.55669 3.66667 3.78768 4.69306 4.72269 4.81742 4.97569 5.06553 5.13136 5.17737 5.29362 5.37179 5.53333 5.56364 5.71382 5.78462 5.81531 5.88128 5.90143 6.17697 6.20443 6.22024 6.23024 6.27139 6.29653 6.42378 6.45275 6.47473 6.57690 6.74112 6.91035 6.94123 7.19204 7.31194 7.54866 7.63611 7.90853 7.93083 8.21676 8.48190 8.59001 8.61933 8.96996 9.49097 9.92429 11.33180 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.004375 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.261109 B = 6398.218399 C = 8498.251687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.003 0.997 5 C -0.475 4.475 6 H 0.080 0.920 7 C 0.049 3.951 8 N -0.908 5.908 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.277 1.277 13 N -0.670 5.670 14 C 0.100 3.900 15 H 0.089 0.911 16 C -0.179 4.179 17 C -0.122 4.122 18 C 0.501 3.499 19 O -0.451 6.451 20 N -0.690 5.690 21 C 0.154 3.846 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.088 4.088 25 C -0.106 4.106 26 C 0.522 3.478 27 O -0.498 6.498 28 O -0.516 6.516 29 C -0.059 4.059 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.038 0.962 35 H 0.255 0.745 36 H 0.311 0.689 37 H 0.048 0.952 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.406 0.594 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.413 0.587 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.155 12.001 17.461 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.117 3.883 4 H 0.020 0.980 5 C -0.514 4.514 6 H 0.098 0.902 7 C -0.149 4.149 8 N -0.549 5.549 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.219 1.219 12 H -0.202 1.202 13 N -0.300 5.300 14 C -0.012 4.012 15 H 0.108 0.892 16 C -0.238 4.238 17 C -0.163 4.163 18 C 0.288 3.712 19 O -0.318 6.318 20 N -0.338 5.338 21 C 0.059 3.941 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.107 4.107 25 C -0.108 4.108 26 C 0.365 3.635 27 O -0.386 6.386 28 O -0.328 6.328 29 C -0.079 4.079 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.241 0.759 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.271 0.729 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.996 11.502 16.879 20.450 hybrid contribution 0.175 0.079 -0.770 0.794 sum 1.171 11.581 16.109 19.874 Atomic orbital electron populations 1.21885 0.99827 0.99239 0.99599 1.21827 0.90961 1.00958 1.03003 1.19101 0.95623 0.89333 0.84242 0.97983 1.21512 0.91350 1.34189 1.04349 0.90181 1.24933 0.97583 0.96276 0.96134 1.69877 1.34410 1.40753 1.09895 0.86690 0.86722 0.78307 0.76468 1.20710 1.21949 1.20238 1.60773 1.37871 0.99981 1.31388 1.21239 0.95052 0.91407 0.93476 0.89236 1.22541 0.98346 1.00954 1.01961 1.21733 0.92759 1.01624 1.00152 1.21026 0.91786 0.78363 0.80042 1.90921 1.52223 1.34989 1.53703 1.43859 1.06487 1.59260 1.24184 1.17544 0.84643 0.99495 0.92407 1.21156 0.97384 1.01267 0.94206 1.20879 0.91808 1.00936 0.99708 1.21347 1.00254 0.97758 0.91354 1.18852 0.91159 1.08435 0.92359 1.20908 0.82164 0.72709 0.87724 1.90975 1.83994 1.44749 1.18845 1.84520 1.16954 1.86092 1.45236 1.21351 0.89791 0.95108 1.01686 0.94675 0.94726 0.93983 0.88247 0.94348 0.93553 0.87150 0.93292 0.92080 0.93177 0.89590 0.89498 0.75895 0.85202 0.84997 0.84639 0.72853 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.81 37.16 0.36 -2.53 16 2 C -0.13 -3.12 5.32 -26.73 -0.14 -3.27 16 3 C 0.22 5.68 1.80 -68.86 -0.12 5.55 16 4 H 0.00 0.07 6.96 -51.93 -0.36 -0.29 16 5 C -0.48 -13.92 8.78 -34.44 -0.30 -14.22 16 6 H 0.08 2.48 5.99 -52.48 -0.31 2.17 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.91 -27.28 11.29 55.43 0.63 -26.65 16 9 Si 0.89 24.08 29.54 -169.99 -5.02 19.06 16 10 H -0.28 -7.64 7.11 56.52 0.40 -7.24 16 11 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 12 H -0.28 -7.69 7.11 56.52 0.40 -7.29 16 13 N -0.67 -13.96 5.20 -100.96 -0.52 -14.49 16 14 C 0.10 1.77 1.97 -67.72 -0.13 1.63 16 15 H 0.09 1.92 7.68 -51.92 -0.40 1.53 16 16 C -0.18 -2.65 9.15 37.16 0.34 -2.31 16 17 C -0.12 -1.61 5.38 -27.88 -0.15 -1.76 16 18 C 0.50 7.97 7.43 -10.98 -0.08 7.89 16 19 O -0.45 -9.82 11.29 5.55 0.06 -9.76 16 20 N -0.69 -8.23 5.34 -9.89 -0.05 -8.29 16 21 C 0.15 2.04 6.27 -83.74 -0.53 1.51 16 22 C -0.12 -1.20 9.95 -39.31 -0.39 -1.59 16 23 C -0.11 -1.08 10.02 -39.67 -0.40 -1.48 16 24 C -0.09 -0.98 9.61 -39.15 -0.38 -1.36 16 25 C -0.11 -1.55 5.87 -105.01 -0.62 -2.17 16 26 C 0.52 8.05 8.27 34.61 0.29 8.34 16 27 O -0.50 -9.84 17.13 -19.24 -0.33 -10.17 16 28 O -0.52 -5.70 12.68 -40.53 -0.51 -6.22 16 29 C -0.06 -0.95 8.20 -38.97 -0.32 -1.27 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.60 6.37 -51.93 -0.33 0.27 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 2.74 5.95 -51.93 -0.31 2.43 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.31 5.90 6.15 -39.29 -0.24 5.66 16 37 H 0.05 0.65 8.06 -51.92 -0.42 0.23 16 38 H 0.06 1.04 7.38 -51.93 -0.38 0.66 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.41 3.10 8.82 -40.82 -0.36 2.74 16 43 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 45 H 0.14 1.24 7.60 -52.49 -0.40 0.84 16 46 H 0.41 2.81 9.11 45.56 0.42 3.22 16 47 H 0.15 3.00 6.00 -52.49 -0.31 2.69 16 LS Contribution 386.26 15.07 5.82 5.82 Total: -1.00 -37.27 386.26 -8.53 -45.80 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.93 Total: 10.56 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.66 Total: -5.67 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: 0.05 Total: -49.42 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.78 Total: -26.14 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.02 Total: 19.06 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.27 -8.53 -45.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.777 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds