Wall clock time and date at job start Tue Mar 31 2020 17:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47365 * 2 1 4 4 H 1.09001 * 109.47024 * 305.05991 * 3 2 1 5 5 C 1.50699 * 109.47123 * 185.05876 * 3 2 1 6 6 H 1.08003 * 119.99964 * 239.99682 * 5 3 2 7 7 C 1.37882 * 120.00079 * 59.99893 * 5 3 2 8 8 N 1.31517 * 119.99414 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47245 * 60.00575 * 9 7 5 11 11 H 1.48503 * 109.46712 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47414 * 299.99660 * 9 7 5 13 13 N 1.46904 * 109.47161 * 65.05841 * 3 2 1 14 14 C 1.46891 * 111.00141 * 210.91365 * 13 3 2 15 15 H 1.09007 * 109.46902 * 322.14912 * 14 13 3 16 16 C 1.52997 * 109.47325 * 82.14405 * 14 13 3 17 17 C 1.52999 * 109.47309 * 202.14707 * 14 13 3 18 18 C 1.50702 * 109.46845 * 65.00043 * 17 14 13 19 19 O 1.21285 * 120.00332 * 0.02562 * 18 17 14 20 20 N 1.34778 * 119.99933 * 180.02562 * 18 17 14 21 21 C 1.39959 * 120.00298 * 185.11562 * 20 18 17 22 22 C 1.38996 * 119.99687 * 213.09878 * 21 20 18 23 23 C 1.38222 * 120.23051 * 179.72711 * 22 21 20 24 24 C 1.38012 * 120.22551 * 0.54294 * 23 22 21 25 25 C 1.39628 * 119.99178 * 359.73357 * 24 23 22 26 26 C 1.47741 * 120.11435 * 180.02562 * 25 24 23 27 27 O 1.21462 * 119.99927 * 179.97438 * 26 25 24 28 28 O 1.34714 * 120.00092 * 359.96787 * 26 25 24 29 29 C 1.38576 * 119.99128 * 33.37131 * 21 20 18 30 30 H 1.08994 * 109.47266 * 184.04922 * 1 2 3 31 31 H 1.08997 * 109.46744 * 304.05223 * 1 2 3 32 32 H 1.09005 * 109.46813 * 64.04599 * 1 2 3 33 33 H 1.09000 * 109.47049 * 239.99769 * 2 1 3 34 34 H 1.09002 * 109.46598 * 120.00006 * 2 1 3 35 35 H 0.97005 * 119.99426 * 180.02562 * 8 7 5 36 36 H 1.00905 * 110.99963 * 334.86941 * 13 3 2 37 37 H 1.09008 * 109.46767 * 55.04728 * 16 14 13 38 38 H 1.08995 * 109.47841 * 295.04840 * 16 14 13 39 39 H 1.09004 * 109.47631 * 175.04528 * 16 14 13 40 40 H 1.09002 * 109.47200 * 184.99939 * 17 14 13 41 41 H 1.08998 * 109.47010 * 304.99939 * 17 14 13 42 42 H 0.97004 * 120.00064 * 5.11686 * 20 18 17 43 43 H 1.07999 * 119.88464 * 359.97143 * 22 21 20 44 44 H 1.07993 * 119.88659 * 180.27620 * 23 22 21 45 45 H 1.07997 * 120.00157 * 179.70503 * 24 23 22 46 46 H 0.96693 * 116.99607 * 179.97438 * 28 26 25 47 47 H 1.07997 * 120.11908 * 359.97328 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9818 -0.8412 5 6 3.5419 1.4442 -0.1253 6 1 4.1479 1.8886 0.6504 7 6 4.1422 0.8787 -1.2302 8 7 3.4040 0.3381 -2.1750 9 14 6.0036 0.8815 -1.3858 10 1 6.5973 0.1471 -0.2398 11 1 6.3952 0.2184 -2.6555 12 1 6.4982 2.2817 -1.3862 13 7 1.6527 2.0988 1.2558 14 6 1.4373 3.5377 1.0532 15 1 2.1749 3.9196 0.3472 16 6 0.0311 3.7695 0.4968 17 6 1.5840 4.2685 2.3893 18 6 3.0043 4.1429 2.8773 19 8 3.8191 3.5296 2.2208 20 7 3.3691 4.7120 4.0433 21 6 4.7097 4.6878 4.4446 22 6 5.0294 4.6075 5.7949 23 6 6.3517 4.5776 6.1964 24 6 7.3637 4.6385 5.2599 25 6 7.0531 4.7251 3.9014 26 6 8.1342 4.7899 2.8965 27 8 7.8617 4.8647 1.7152 28 8 9.4223 4.7661 3.2904 29 6 5.7180 4.7495 3.4961 30 1 -0.3633 -1.0250 0.0726 31 1 -0.3633 0.5754 0.8514 32 1 -0.3633 0.4498 -0.9241 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8264 -0.0602 -2.9522 36 1 0.8343 1.6632 1.6540 37 1 -0.7022 3.3100 1.1596 38 1 -0.0456 3.3233 -0.4947 39 1 -0.1610 4.8404 0.4291 40 1 1.3374 5.3219 2.2563 41 1 0.9079 3.8267 3.1212 42 1 2.7025 5.1384 4.6043 43 1 4.2419 4.5644 6.5328 44 1 6.5938 4.5106 7.2467 45 1 8.3956 4.6196 5.5779 46 1 10.0943 4.8104 2.5966 47 1 5.4715 4.8160 2.4467 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:34 Heat of formation + Delta-G solvation = -126.317641 kcal Electronic energy + Delta-G solvation = -29462.436196 eV Core-core repulsion = 25415.930829 eV Total energy + Delta-G solvation = -4046.505367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73483 -41.01858 -39.42451 -38.33772 -37.20442 -35.69716 -35.37314 -33.54562 -32.29195 -31.38182 -30.33205 -28.54202 -27.91968 -25.93946 -24.70688 -23.97660 -22.38397 -21.97223 -21.45704 -20.89179 -19.33711 -18.84876 -18.21316 -17.88966 -17.19943 -16.98740 -16.80786 -16.77144 -16.41245 -16.00853 -15.73267 -15.25738 -15.04088 -14.68815 -14.48620 -14.45775 -14.38801 -14.01261 -13.80203 -13.37019 -13.24019 -13.06843 -12.88704 -12.87271 -12.75673 -12.71159 -12.62671 -12.57416 -12.35905 -11.90118 -11.82165 -11.77809 -11.51044 -11.35729 -11.25749 -10.92004 -10.58036 -10.38856 -10.05113 -9.11689 -8.77374 -8.02551 -6.07052 -0.36687 0.31587 1.26935 1.30604 1.41609 1.42433 1.88051 1.96299 2.25252 2.42635 2.81886 3.21590 3.68756 3.84863 3.92814 4.01436 4.06867 4.16514 4.23189 4.43179 4.50876 4.53349 4.54378 4.61166 4.67682 4.73255 4.75961 4.79492 4.89415 5.04096 5.09957 5.25381 5.26802 5.27736 5.28337 5.34078 5.40368 5.45531 5.47413 5.52924 5.68674 5.85865 5.96074 6.03597 6.48878 6.63520 6.68622 6.85933 7.11200 7.19951 7.54101 7.60841 8.99873 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.004375 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.261109 B = 6398.218399 C = 8498.251687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.236 3.764 4 H -0.029 1.029 5 C -0.485 4.485 6 H 0.056 0.944 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.933 3.067 10 H -0.282 1.282 11 H -0.275 1.275 12 H -0.296 1.296 13 N -0.672 5.672 14 C 0.096 3.904 15 H 0.035 0.965 16 C -0.167 4.167 17 C -0.110 4.110 18 C 0.495 3.505 19 O -0.523 6.523 20 N -0.669 5.669 21 C 0.136 3.864 22 C -0.098 4.098 23 C -0.102 4.102 24 C -0.077 4.077 25 C -0.136 4.136 26 C 0.523 3.477 27 O -0.560 6.560 28 O -0.496 6.496 29 C -0.094 4.094 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.255 0.745 36 H 0.325 0.675 37 H 0.077 0.923 38 H 0.029 0.971 39 H 0.079 0.921 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.430 0.570 43 H 0.174 0.826 44 H 0.180 0.820 45 H 0.160 0.840 46 H 0.431 0.569 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 12.726 22.085 25.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.127 3.873 4 H -0.012 1.012 5 C -0.524 4.524 6 H 0.074 0.926 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.762 3.238 10 H -0.208 1.208 11 H -0.200 1.200 12 H -0.222 1.222 13 N -0.304 5.304 14 C -0.015 4.015 15 H 0.053 0.947 16 C -0.226 4.226 17 C -0.150 4.150 18 C 0.284 3.716 19 O -0.395 6.395 20 N -0.318 5.318 21 C 0.040 3.960 22 C -0.118 4.118 23 C -0.120 4.120 24 C -0.096 4.096 25 C -0.138 4.138 26 C 0.369 3.631 27 O -0.453 6.453 28 O -0.309 6.309 29 C -0.115 4.115 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.144 0.856 37 H 0.095 0.905 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.270 0.730 43 H 0.191 0.809 44 H 0.197 0.803 45 H 0.177 0.823 46 H 0.293 0.707 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.640 12.259 21.574 24.822 hybrid contribution 0.783 -0.051 -2.065 2.209 sum 0.144 12.209 19.508 23.014 Atomic orbital electron populations 1.21717 0.95746 1.01133 1.00523 1.21621 0.94583 0.99307 1.00743 1.18744 0.93047 0.90222 0.85274 1.01155 1.21777 0.93837 1.33242 1.03584 0.92614 1.25448 1.00301 0.96673 0.96360 1.69968 1.35126 1.41349 1.10074 0.86016 0.83690 0.77103 0.76974 1.20826 1.20033 1.22250 1.60567 1.38993 1.01762 1.29037 1.21229 0.95405 0.89559 0.95317 0.94692 1.22397 0.96670 1.03000 1.00572 1.21698 0.91696 1.03543 0.98073 1.21585 0.92302 0.77403 0.80356 1.90928 1.54174 1.38523 1.55889 1.43551 1.06769 1.58225 1.23302 1.17755 0.84301 1.00485 0.93410 1.21638 0.99096 0.98138 0.92971 1.21462 0.90830 0.98235 1.01497 1.21685 1.02253 0.95938 0.89698 1.18988 0.90182 1.10682 0.93928 1.21300 0.83476 0.71118 0.87163 1.90945 1.84984 1.48004 1.21330 1.84469 1.15792 1.85052 1.45634 1.21130 0.91896 0.98439 1.00068 0.92528 0.91998 0.94525 0.91858 0.95157 0.93542 0.85584 0.90453 0.95139 0.90238 0.85670 0.85745 0.73040 0.80904 0.80276 0.82266 0.70724 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.06 9.81 71.98 0.71 -4.35 16 2 C -0.12 -6.14 5.32 30.59 0.16 -5.97 16 3 C 0.24 12.49 1.80 44.17 0.08 12.57 16 4 H -0.03 -1.70 6.96 -2.39 -0.02 -1.72 16 5 C -0.49 -30.28 8.78 25.60 0.22 -30.05 16 6 H 0.06 3.74 5.99 -2.91 -0.02 3.72 16 7 C 0.01 0.52 5.29 84.66 0.45 0.97 16 8 N -0.92 -57.89 11.29 21.45 0.24 -57.65 16 9 Si 0.93 52.29 29.54 68.60 2.03 54.32 16 10 H -0.28 -15.72 7.11 99.48 0.71 -15.01 16 11 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 12 H -0.30 -17.36 7.11 99.48 0.71 -16.65 16 13 N -0.67 -28.45 5.20 -473.32 -2.46 -30.91 16 14 C 0.10 3.42 1.97 44.92 0.09 3.51 16 15 H 0.03 1.62 7.68 -2.38 -0.02 1.60 16 16 C -0.17 -4.69 9.15 71.98 0.66 -4.03 16 17 C -0.11 -2.68 5.38 29.85 0.16 -2.52 16 18 C 0.50 15.91 7.43 87.66 0.65 16.56 16 19 O -0.52 -24.56 11.29 -3.05 -0.03 -24.60 16 20 N -0.67 -15.01 5.34 -303.60 -1.62 -16.63 16 21 C 0.14 3.48 6.27 38.11 0.24 3.72 16 22 C -0.10 -1.58 9.95 22.45 0.22 -1.35 16 23 C -0.10 -1.45 10.02 22.21 0.22 -1.22 16 24 C -0.08 -1.54 9.61 22.55 0.22 -1.32 16 25 C -0.14 -4.13 5.87 -20.11 -0.12 -4.24 16 26 C 0.52 17.32 8.27 70.33 0.58 17.91 16 27 O -0.56 -24.62 17.13 19.96 0.34 -24.28 16 28 O -0.50 -11.00 12.68 -56.24 -0.71 -11.71 16 29 C -0.09 -3.28 8.20 22.67 0.19 -3.10 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.99 6.37 -2.39 -0.02 1.97 16 32 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 3.61 5.95 -2.39 -0.01 3.59 16 34 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.26 15.40 8.31 -92.70 -0.77 14.63 16 36 H 0.33 11.85 6.15 -89.69 -0.55 11.30 16 37 H 0.08 1.74 8.06 -2.38 -0.02 1.72 16 38 H 0.03 1.03 7.38 -2.39 -0.02 1.01 16 39 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.43 5.03 8.82 -92.70 -0.82 4.21 16 43 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 45 H 0.16 2.36 7.60 -2.91 -0.02 2.34 16 46 H 0.43 5.92 9.11 -74.06 -0.67 5.25 16 47 H 0.10 4.56 6.00 -2.91 -0.02 4.54 16 Total: -1.00 -94.20 386.26 1.50 -92.70 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: -1.02 Total: 21.69 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.73 Total: -2.94 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -3.84 Total: -105.18 kcal Atomic # 8 Polarization: -60.18 SS G_CDS: -0.41 Total: -60.59 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 2.03 Total: 54.32 kcal Total: -94.20 1.50 -92.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.617 kcal (2) G-P(sol) polarization free energy of solvation -94.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds