Wall clock time and date at job start Tue Mar 31 2020 17:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46891 * 2 1 4 4 H 1.09002 * 109.47490 * 54.37049 * 3 2 1 5 5 C 1.50698 * 109.47087 * 174.36936 * 3 2 1 6 6 H 1.08001 * 120.00083 * 119.99791 * 5 3 2 7 7 C 1.37878 * 120.00286 * 300.00039 * 5 3 2 8 8 N 1.31515 * 119.99823 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00468 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47267 * 89.99852 * 9 7 5 11 11 H 1.48497 * 109.47633 * 210.00110 * 9 7 5 12 12 H 1.48504 * 109.46856 * 330.00171 * 9 7 5 13 13 N 1.46897 * 109.47536 * 294.37026 * 3 2 1 14 14 C 1.46895 * 111.00759 * 151.12261 * 13 3 2 15 15 H 1.09003 * 109.46760 * 39.89016 * 14 13 3 16 16 C 1.53002 * 109.47184 * 279.89692 * 14 13 3 17 17 C 1.52998 * 109.47595 * 159.89446 * 14 13 3 18 18 C 1.50702 * 109.47128 * 295.00318 * 17 14 13 19 19 O 1.21294 * 119.99907 * 359.97438 * 18 17 14 20 20 N 1.34769 * 120.00022 * 180.02562 * 18 17 14 21 21 C 1.39959 * 119.99990 * 184.35465 * 20 18 17 22 22 C 1.38999 * 119.99272 * 324.38855 * 21 20 18 23 23 C 1.38221 * 120.22905 * 179.72736 * 22 21 20 24 24 C 1.38010 * 120.23146 * 0.55207 * 23 22 21 25 25 C 1.39629 * 119.98542 * 359.72426 * 24 23 22 26 26 C 1.47751 * 120.11468 * 180.02562 * 25 24 23 27 27 O 1.21462 * 120.00033 * 179.97438 * 26 25 24 28 28 O 1.34706 * 119.99524 * 359.97435 * 26 25 24 29 29 C 1.38585 * 119.99978 * 144.66756 * 21 20 18 30 30 H 1.09004 * 109.47086 * 175.95254 * 1 2 3 31 31 H 1.08997 * 109.47176 * 295.95414 * 1 2 3 32 32 H 1.09000 * 109.46692 * 55.95427 * 1 2 3 33 33 H 1.08999 * 109.47217 * 239.99488 * 2 1 3 34 34 H 1.09009 * 109.46967 * 119.99675 * 2 1 3 35 35 H 0.96996 * 120.00449 * 180.02562 * 8 7 5 36 36 H 1.00898 * 110.99575 * 27.16304 * 13 3 2 37 37 H 1.09002 * 109.47005 * 65.02060 * 16 14 13 38 38 H 1.08997 * 109.47270 * 185.02311 * 16 14 13 39 39 H 1.08998 * 109.47026 * 305.03102 * 16 14 13 40 40 H 1.08998 * 109.46515 * 55.00184 * 17 14 13 41 41 H 1.08999 * 109.46787 * 174.99971 * 17 14 13 42 42 H 0.96998 * 120.00219 * 4.34644 * 20 18 17 43 43 H 1.07997 * 119.88351 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.88459 * 180.27596 * 23 22 21 45 45 H 1.07994 * 120.00547 * 179.74852 * 24 23 22 46 46 H 0.96702 * 116.99311 * 180.02562 * 28 26 25 47 47 H 1.08003 * 120.11122 * 359.97390 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5405 1.4448 0.1394 6 1 4.1538 1.8865 -0.6320 7 6 4.1305 0.8830 1.2518 8 7 3.3836 0.3455 2.1914 9 14 5.9904 0.8852 1.4243 10 1 6.4210 2.1207 2.1267 11 1 6.4165 -0.3029 2.2065 12 1 6.6125 0.8397 0.0766 13 7 1.6644 2.0947 -1.2615 14 6 1.4941 3.5418 -1.0758 15 1 2.2698 3.9161 -0.4077 16 6 0.1185 3.8194 -0.4662 17 6 1.6035 4.2462 -2.4296 18 6 2.9986 4.0755 -2.9734 19 8 3.8243 3.4522 -2.3402 20 7 3.3290 4.6163 -4.1628 21 6 4.5954 4.3816 -4.7106 22 6 5.7052 4.2855 -3.8792 23 6 6.9573 4.0482 -4.4145 24 6 7.1160 3.9163 -5.7791 25 6 6.0084 4.0169 -6.6234 26 6 6.1750 3.8756 -8.0846 27 8 5.2101 3.9630 -8.8171 28 8 7.3971 3.6499 -8.6044 29 6 4.7436 4.2508 -6.0823 30 1 -0.3633 -1.0251 -0.0725 31 1 -0.3633 0.4497 0.9240 32 1 -0.3633 0.5754 -0.8515 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.7985 -0.0494 2.9742 36 1 0.8306 1.6792 -1.6491 37 1 0.0725 3.3930 0.5359 38 1 -0.0439 4.8958 -0.4109 39 1 -0.6530 3.3670 -1.0892 40 1 0.8865 3.8099 -3.1250 41 1 1.3893 5.3077 -2.3052 42 1 2.6892 5.1681 -4.6393 43 1 5.5881 4.3926 -2.8109 44 1 7.8150 3.9701 -3.7629 45 1 8.0965 3.7350 -6.1937 46 1 7.4562 3.5650 -9.5659 47 1 3.8831 4.3292 -6.7302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:37 Heat of formation + Delta-G solvation = -99.482405 kcal Electronic energy + Delta-G solvation = -28941.516643 eV Core-core repulsion = 24896.174940 eV Total energy + Delta-G solvation = -4045.341704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73728 -40.00518 -38.30620 -36.77066 -36.30523 -34.55975 -33.67328 -31.54318 -31.34647 -30.24933 -28.87276 -27.39379 -25.95487 -24.93841 -22.99955 -22.55248 -21.87208 -20.56787 -19.69305 -19.48283 -18.49507 -17.81037 -16.89473 -16.26991 -16.02750 -15.83186 -15.70251 -15.50352 -14.88248 -14.54981 -14.27996 -13.93999 -13.78062 -13.52470 -13.36365 -13.02834 -12.92542 -12.75326 -12.38310 -12.08450 -11.88418 -11.82036 -11.70946 -11.61513 -11.50851 -11.24714 -10.92969 -10.85924 -10.69655 -10.53701 -10.34588 -10.25595 -9.78416 -9.59792 -9.48294 -9.36493 -9.06397 -8.87550 -8.18667 -8.17649 -7.05783 -5.79581 -3.79297 0.59352 1.20506 2.39238 2.70270 3.03058 3.24306 3.42755 3.48649 3.56537 3.74012 4.60624 4.70048 4.79808 4.98467 5.01701 5.12837 5.14407 5.26195 5.38318 5.49523 5.52091 5.72015 5.76144 5.77465 5.86418 5.88326 6.06919 6.17528 6.19921 6.21239 6.24082 6.27085 6.32995 6.43230 6.46309 6.55860 6.71318 6.89216 6.92931 7.16670 7.28156 7.52220 7.60603 7.65797 7.89262 8.15227 8.44125 8.53641 8.56674 8.92219 9.40582 9.84663 11.26653 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003243 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.186431 B = 8631.866785 C = 9993.743754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C 0.223 3.777 4 H 0.002 0.998 5 C -0.477 4.477 6 H 0.080 0.920 7 C 0.047 3.953 8 N -0.906 5.906 9 Si 0.891 3.109 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.275 1.275 13 N -0.670 5.670 14 C 0.102 3.898 15 H 0.090 0.910 16 C -0.180 4.180 17 C -0.123 4.123 18 C 0.506 3.494 19 O -0.459 6.459 20 N -0.690 5.690 21 C 0.150 3.850 22 C -0.080 4.080 23 C -0.114 4.114 24 C -0.082 4.082 25 C -0.118 4.118 26 C 0.531 3.469 27 O -0.518 6.518 28 O -0.512 6.512 29 C -0.088 4.088 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.311 0.689 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.406 0.594 43 H 0.150 0.850 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.413 0.587 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.728 10.982 -16.218 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.116 3.884 4 H 0.020 0.980 5 C -0.516 4.516 6 H 0.098 0.902 7 C -0.151 4.151 8 N -0.548 5.548 9 Si 0.720 3.280 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.199 1.199 13 N -0.300 5.300 14 C -0.010 4.010 15 H 0.108 0.892 16 C -0.239 4.239 17 C -0.164 4.164 18 C 0.293 3.707 19 O -0.327 6.327 20 N -0.337 5.337 21 C 0.055 3.945 22 C -0.100 4.100 23 C -0.132 4.132 24 C -0.101 4.101 25 C -0.119 4.119 26 C 0.376 3.624 27 O -0.408 6.408 28 O -0.323 6.323 29 C -0.109 4.109 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.241 0.759 43 H 0.167 0.833 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.271 0.729 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.665 10.496 -15.479 18.776 hybrid contribution -0.279 0.087 -0.294 0.415 sum 1.386 10.583 -15.773 19.045 Atomic orbital electron populations 1.21883 0.99806 0.99282 0.99606 1.21808 0.91012 1.00877 1.02979 1.19098 0.95661 0.89449 0.84154 0.98042 1.21538 0.91483 1.34487 1.04055 0.90195 1.24967 0.97651 0.96275 0.96199 1.69881 1.34357 1.40796 1.09751 0.86595 0.86616 0.76920 0.77829 1.21212 1.21811 1.19950 1.60775 1.37375 1.00268 1.31627 1.21219 0.95638 0.91231 0.92926 0.89177 1.22549 0.98482 1.00891 1.02024 1.21746 0.93185 1.01685 0.99806 1.20975 0.91313 0.78495 0.79909 1.90862 1.50177 1.35599 1.56038 1.43810 1.13770 1.52981 1.23164 1.17556 0.85801 0.99908 0.91209 1.21737 0.90723 0.95720 1.01840 1.21119 0.97635 0.99799 0.94689 1.21383 0.98211 0.97173 0.93328 1.18662 0.94739 1.09642 0.88884 1.20912 0.80098 0.72004 0.89368 1.90876 1.40673 1.47421 1.61801 1.84567 1.33156 1.83983 1.30618 1.20912 0.96727 0.99465 0.93800 0.94650 0.93966 0.94725 0.94317 0.88269 0.93531 0.87145 0.92006 0.93177 0.93314 0.89407 0.89571 0.75886 0.83273 0.84758 0.84625 0.72860 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.81 37.16 0.36 -2.50 16 2 C -0.13 -3.05 5.33 -26.73 -0.14 -3.19 16 3 C 0.22 5.49 1.81 -68.87 -0.12 5.37 16 4 H 0.00 0.05 6.81 -51.93 -0.35 -0.30 16 5 C -0.48 -13.37 8.68 -34.44 -0.30 -13.67 16 6 H 0.08 2.35 6.19 -52.49 -0.32 2.02 16 7 C 0.05 1.35 5.29 -17.82 -0.09 1.26 16 8 N -0.91 -26.37 11.29 55.43 0.63 -25.74 16 9 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.67 -13.64 5.18 -100.96 -0.52 -14.17 16 14 C 0.10 1.73 1.98 -67.72 -0.13 1.60 16 15 H 0.09 1.84 7.64 -51.93 -0.40 1.45 16 16 C -0.18 -2.62 9.14 37.16 0.34 -2.29 16 17 C -0.12 -1.58 5.38 -27.88 -0.15 -1.73 16 18 C 0.51 7.67 7.53 -10.99 -0.08 7.58 16 19 O -0.46 -9.27 11.26 5.55 0.06 -9.21 16 20 N -0.69 -8.14 5.33 -9.89 -0.05 -8.19 16 21 C 0.15 1.97 6.28 -83.74 -0.53 1.44 16 22 C -0.08 -1.13 8.69 -39.31 -0.34 -1.47 16 23 C -0.11 -1.37 10.02 -39.67 -0.40 -1.77 16 24 C -0.08 -0.91 9.61 -39.15 -0.38 -1.28 16 25 C -0.12 -1.40 5.87 -105.00 -0.62 -2.01 16 26 C 0.53 6.02 8.27 34.62 0.29 6.31 16 27 O -0.52 -7.12 17.13 -19.24 -0.33 -7.45 16 28 O -0.51 -4.14 12.68 -40.51 -0.51 -4.65 16 29 C -0.09 -1.07 9.51 -38.97 -0.37 -1.44 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.03 0.59 6.38 -51.93 -0.33 0.26 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 2.68 5.94 -51.92 -0.31 2.37 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.31 5.83 6.23 -39.29 -0.24 5.59 16 37 H 0.06 1.04 7.21 -51.93 -0.37 0.66 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.41 3.27 8.82 -40.82 -0.36 2.91 16 43 H 0.15 2.39 6.26 -52.49 -0.33 2.06 16 44 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 45 H 0.14 1.22 7.60 -52.49 -0.40 0.82 16 46 H 0.41 1.42 9.11 45.56 0.42 1.83 16 47 H 0.14 1.52 7.65 -52.48 -0.40 1.12 16 LS Contribution 386.08 15.07 5.82 5.82 Total: -1.00 -34.56 386.08 -8.52 -43.08 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -5.92 Total: 10.85 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -2.67 Total: -7.79 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.05 Total: -48.10 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.78 Total: -21.32 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.56 -8.52 -43.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.399 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds