Wall clock time and date at job start Tue Mar 31 2020 17:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46891 * 2 1 4 4 H 1.09002 * 109.47490 * 54.37049 * 3 2 1 5 5 C 1.50698 * 109.47087 * 174.36936 * 3 2 1 6 6 H 1.08001 * 120.00083 * 119.99791 * 5 3 2 7 7 C 1.37878 * 120.00286 * 300.00039 * 5 3 2 8 8 N 1.31515 * 119.99823 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00468 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47267 * 89.99852 * 9 7 5 11 11 H 1.48497 * 109.47633 * 210.00110 * 9 7 5 12 12 H 1.48504 * 109.46856 * 330.00171 * 9 7 5 13 13 N 1.46897 * 109.47536 * 294.37026 * 3 2 1 14 14 C 1.46895 * 111.00759 * 151.12261 * 13 3 2 15 15 H 1.09003 * 109.46760 * 39.89016 * 14 13 3 16 16 C 1.53002 * 109.47184 * 279.89692 * 14 13 3 17 17 C 1.52998 * 109.47595 * 159.89446 * 14 13 3 18 18 C 1.50702 * 109.47128 * 295.00318 * 17 14 13 19 19 O 1.21294 * 119.99907 * 359.97438 * 18 17 14 20 20 N 1.34769 * 120.00022 * 180.02562 * 18 17 14 21 21 C 1.39959 * 119.99990 * 184.35465 * 20 18 17 22 22 C 1.38999 * 119.99272 * 324.38855 * 21 20 18 23 23 C 1.38221 * 120.22905 * 179.72736 * 22 21 20 24 24 C 1.38010 * 120.23146 * 0.55207 * 23 22 21 25 25 C 1.39629 * 119.98542 * 359.72426 * 24 23 22 26 26 C 1.47751 * 120.11468 * 180.02562 * 25 24 23 27 27 O 1.21462 * 120.00033 * 179.97438 * 26 25 24 28 28 O 1.34706 * 119.99524 * 359.97435 * 26 25 24 29 29 C 1.38585 * 119.99978 * 144.66756 * 21 20 18 30 30 H 1.09004 * 109.47086 * 175.95254 * 1 2 3 31 31 H 1.08997 * 109.47176 * 295.95414 * 1 2 3 32 32 H 1.09000 * 109.46692 * 55.95427 * 1 2 3 33 33 H 1.08999 * 109.47217 * 239.99488 * 2 1 3 34 34 H 1.09009 * 109.46967 * 119.99675 * 2 1 3 35 35 H 0.96996 * 120.00449 * 180.02562 * 8 7 5 36 36 H 1.00898 * 110.99575 * 27.16304 * 13 3 2 37 37 H 1.09002 * 109.47005 * 65.02060 * 16 14 13 38 38 H 1.08997 * 109.47270 * 185.02311 * 16 14 13 39 39 H 1.08998 * 109.47026 * 305.03102 * 16 14 13 40 40 H 1.08998 * 109.46515 * 55.00184 * 17 14 13 41 41 H 1.08999 * 109.46787 * 174.99971 * 17 14 13 42 42 H 0.96998 * 120.00219 * 4.34644 * 20 18 17 43 43 H 1.07997 * 119.88351 * 359.97438 * 22 21 20 44 44 H 1.07997 * 119.88459 * 180.27596 * 23 22 21 45 45 H 1.07994 * 120.00547 * 179.74852 * 24 23 22 46 46 H 0.96702 * 116.99311 * 180.02562 * 28 26 25 47 47 H 1.08003 * 120.11122 * 359.97390 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5967 1.9846 0.8353 5 6 3.5405 1.4448 0.1394 6 1 4.1538 1.8865 -0.6320 7 6 4.1305 0.8830 1.2518 8 7 3.3836 0.3455 2.1914 9 14 5.9904 0.8852 1.4243 10 1 6.4210 2.1207 2.1267 11 1 6.4165 -0.3029 2.2065 12 1 6.6125 0.8397 0.0766 13 7 1.6644 2.0947 -1.2615 14 6 1.4941 3.5418 -1.0758 15 1 2.2698 3.9161 -0.4077 16 6 0.1185 3.8194 -0.4662 17 6 1.6035 4.2462 -2.4296 18 6 2.9986 4.0755 -2.9734 19 8 3.8243 3.4522 -2.3402 20 7 3.3290 4.6163 -4.1628 21 6 4.5954 4.3816 -4.7106 22 6 5.7052 4.2855 -3.8792 23 6 6.9573 4.0482 -4.4145 24 6 7.1160 3.9163 -5.7791 25 6 6.0084 4.0169 -6.6234 26 6 6.1750 3.8756 -8.0846 27 8 5.2101 3.9630 -8.8171 28 8 7.3971 3.6499 -8.6044 29 6 4.7436 4.2508 -6.0823 30 1 -0.3633 -1.0251 -0.0725 31 1 -0.3633 0.4497 0.9240 32 1 -0.3633 0.5754 -0.8515 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.7985 -0.0494 2.9742 36 1 0.8306 1.6792 -1.6491 37 1 0.0725 3.3930 0.5359 38 1 -0.0439 4.8958 -0.4109 39 1 -0.6530 3.3670 -1.0892 40 1 0.8865 3.8099 -3.1250 41 1 1.3893 5.3077 -2.3052 42 1 2.6892 5.1681 -4.6393 43 1 5.5881 4.3926 -2.8109 44 1 7.8150 3.9701 -3.7629 45 1 8.0965 3.7350 -6.1937 46 1 7.4562 3.5650 -9.5659 47 1 3.8831 4.3292 -6.7302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030064.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:36 Heat of formation + Delta-G solvation = -124.115210 kcal Electronic energy + Delta-G solvation = -28942.584802 eV Core-core repulsion = 24896.174940 eV Total energy + Delta-G solvation = -4046.409862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69285 -41.00690 -39.40224 -38.31498 -37.10321 -35.69824 -35.34105 -33.51518 -32.31571 -31.39995 -30.33153 -28.53746 -27.89853 -25.85989 -24.68511 -23.77352 -22.84856 -21.71842 -21.41885 -20.82521 -19.40075 -18.68242 -18.15948 -17.99363 -17.25660 -16.93294 -16.71181 -16.66182 -16.40352 -15.86587 -15.80999 -15.29133 -14.95304 -14.79486 -14.55284 -14.37670 -14.32193 -13.98249 -13.79628 -13.34943 -13.22055 -13.08610 -13.00425 -12.78964 -12.74171 -12.59066 -12.51377 -12.45629 -12.35299 -11.86193 -11.78324 -11.75073 -11.49401 -11.31444 -11.23984 -10.87001 -10.56667 -10.34253 -10.07311 -9.17629 -8.75095 -7.96564 -6.03145 -0.35379 0.25134 1.37811 1.38838 1.46964 1.51384 1.83871 1.97883 2.30803 2.49545 2.78560 3.27709 3.70325 3.80380 3.88870 4.05350 4.07409 4.13231 4.19647 4.39639 4.51651 4.54599 4.55857 4.61615 4.67663 4.74065 4.76614 4.81100 4.83123 5.04536 5.11666 5.16204 5.25191 5.27378 5.29307 5.36380 5.41842 5.47585 5.48658 5.55769 5.70669 5.88185 5.92592 6.05076 6.52211 6.60571 6.71000 6.95628 7.14549 7.19770 7.50813 7.64683 9.06219 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011786 B = 0.003243 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.186431 B = 8631.866785 C = 9993.743754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.235 3.765 4 H -0.029 1.029 5 C -0.488 4.488 6 H 0.062 0.938 7 C 0.002 3.998 8 N -0.927 5.927 9 Si 0.944 3.056 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.099 3.901 15 H 0.045 0.955 16 C -0.170 4.170 17 C -0.113 4.113 18 C 0.503 3.497 19 O -0.519 6.519 20 N -0.672 5.672 21 C 0.138 3.862 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.072 4.072 25 C -0.127 4.127 26 C 0.540 3.460 27 O -0.545 6.545 28 O -0.501 6.501 29 C -0.086 4.086 30 H 0.054 0.946 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.254 0.746 36 H 0.322 0.678 37 H 0.030 0.970 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.426 0.574 43 H 0.122 0.878 44 H 0.148 0.852 45 H 0.161 0.839 46 H 0.435 0.565 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 11.946 -18.699 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.126 3.874 4 H -0.011 1.011 5 C -0.528 4.528 6 H 0.080 0.920 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.772 3.228 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.204 1.204 13 N -0.305 5.305 14 C -0.012 4.012 15 H 0.063 0.937 16 C -0.229 4.229 17 C -0.153 4.153 18 C 0.291 3.709 19 O -0.392 6.392 20 N -0.320 5.320 21 C 0.043 3.957 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.091 4.091 25 C -0.128 4.128 26 C 0.385 3.615 27 O -0.438 6.438 28 O -0.315 6.315 29 C -0.106 4.106 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.049 0.951 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.135 0.865 41 H 0.146 0.854 42 H 0.265 0.735 43 H 0.140 0.860 44 H 0.166 0.834 45 H 0.178 0.822 46 H 0.297 0.703 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.959 11.499 -18.022 21.400 hybrid contribution 0.022 -0.161 0.387 0.419 sum 0.981 11.338 -17.636 20.989 Atomic orbital electron populations 1.21723 0.96044 1.01007 1.00458 1.21621 0.94382 0.99648 1.00627 1.18759 0.93552 0.89977 0.85080 1.01108 1.21800 0.93594 1.33852 1.03515 0.92018 1.25603 1.01239 0.96374 0.96201 1.70004 1.35521 1.41464 1.10011 0.85765 0.82479 0.77141 0.77426 1.20700 1.21057 1.20415 1.60611 1.38320 1.02227 1.29373 1.21210 0.95785 0.89270 0.94982 0.93700 1.22413 0.97173 1.02951 1.00348 1.21708 0.92249 1.03817 0.97488 1.21452 0.91727 0.77549 0.80144 1.90860 1.51908 1.38575 1.57855 1.43567 1.13807 1.52397 1.22266 1.17635 0.85913 1.00592 0.91607 1.21680 0.92320 0.97542 1.00801 1.21309 0.97332 0.99474 0.95606 1.21601 0.99124 0.95758 0.92593 1.18894 0.94903 1.09324 0.89714 1.20720 0.80502 0.71369 0.88880 1.90871 1.41742 1.48864 1.62296 1.84513 1.31182 1.83073 1.32736 1.21005 0.97462 0.98922 0.93237 0.92719 0.94457 0.92194 0.95329 0.91832 0.93661 0.85895 0.95084 0.90139 0.90999 0.86456 0.85426 0.73519 0.86008 0.83444 0.82191 0.70296 0.83360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 9.81 71.98 0.71 -4.37 16 2 C -0.12 -6.03 5.33 30.59 0.16 -5.87 16 3 C 0.23 11.95 1.81 44.17 0.08 12.03 16 4 H -0.03 -1.61 6.81 -2.39 -0.02 -1.62 16 5 C -0.49 -28.67 8.68 25.60 0.22 -28.45 16 6 H 0.06 3.82 6.19 -2.91 -0.02 3.80 16 7 C 0.00 0.10 5.29 84.65 0.45 0.55 16 8 N -0.93 -55.92 11.29 21.45 0.24 -55.68 16 9 Si 0.94 47.75 29.54 68.60 2.03 49.78 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 12 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 13 N -0.67 -27.60 5.18 -473.34 -2.45 -30.05 16 14 C 0.10 3.33 1.98 44.92 0.09 3.42 16 15 H 0.04 1.92 7.64 -2.39 -0.02 1.90 16 16 C -0.17 -4.63 9.14 71.98 0.66 -3.98 16 17 C -0.11 -2.61 5.38 29.85 0.16 -2.45 16 18 C 0.50 15.02 7.53 87.66 0.66 15.68 16 19 O -0.52 -21.91 11.26 -3.07 -0.03 -21.94 16 20 N -0.67 -15.10 5.33 -303.60 -1.62 -16.72 16 21 C 0.14 3.56 6.28 38.11 0.24 3.79 16 22 C -0.10 -2.99 8.69 22.45 0.20 -2.80 16 23 C -0.12 -2.83 10.02 22.21 0.22 -2.61 16 24 C -0.07 -1.47 9.61 22.55 0.22 -1.26 16 25 C -0.13 -2.80 5.87 -20.11 -0.12 -2.92 16 26 C 0.54 11.07 8.27 70.34 0.58 11.65 16 27 O -0.55 -14.02 17.13 19.96 0.34 -13.68 16 28 O -0.50 -6.65 12.68 -56.16 -0.71 -7.36 16 29 C -0.09 -1.97 9.51 22.67 0.22 -1.75 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.93 6.38 -2.39 -0.02 1.92 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 3.56 5.94 -2.38 -0.01 3.54 16 35 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 36 H 0.32 11.65 6.23 -89.70 -0.56 11.09 16 37 H 0.03 1.03 7.21 -2.39 -0.02 1.01 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.07 1.64 8.07 -2.39 -0.02 1.62 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.43 5.83 8.82 -92.71 -0.82 5.01 16 43 H 0.12 4.23 6.26 -2.91 -0.02 4.21 16 44 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.16 2.44 7.60 -2.91 -0.02 2.42 16 46 H 0.43 1.65 9.11 -74.06 -0.67 0.97 16 47 H 0.15 3.02 7.65 -2.91 -0.02 3.00 16 Total: -1.00 -80.29 386.08 1.51 -78.79 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -1.02 Total: 26.20 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 4.74 Total: -9.33 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.83 Total: -102.45 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.40 Total: -42.98 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -80.29 1.51 -78.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030064.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.330 kcal (2) G-P(sol) polarization free energy of solvation -80.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds