Wall clock time and date at job start Tue Mar 31 2020 17:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47473 * 2 1 4 4 H 1.08999 * 109.47418 * 185.43039 * 3 2 1 5 5 C 1.50707 * 109.47177 * 305.43182 * 3 2 1 6 6 H 1.07999 * 120.00174 * 119.99611 * 5 3 2 7 7 C 1.37881 * 119.99647 * 299.99676 * 5 3 2 8 8 N 1.31511 * 119.99900 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99893 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47582 * 90.00058 * 9 7 5 11 11 H 1.48507 * 109.46560 * 209.99536 * 9 7 5 12 12 H 1.48501 * 109.47232 * 329.99393 * 9 7 5 13 13 N 1.46903 * 109.47161 * 65.43026 * 3 2 1 14 14 C 1.46893 * 110.99946 * 82.68711 * 13 3 2 15 15 H 1.08997 * 109.47329 * 326.10661 * 14 13 3 16 16 C 1.53007 * 109.47381 * 86.10850 * 14 13 3 17 17 C 1.50702 * 109.47317 * 206.10548 * 14 13 3 18 18 O 1.21292 * 119.99800 * 0.02562 * 17 14 13 19 19 N 1.34775 * 120.00320 * 180.02562 * 17 14 13 20 20 C 1.39955 * 119.99805 * 176.65320 * 19 17 14 21 21 C 1.38624 * 120.00282 * 32.38674 * 20 19 17 22 22 C 1.39509 * 119.77672 * 179.72537 * 21 20 19 23 23 C 1.47737 * 120.11645 * 180.26767 * 22 21 20 24 24 O 1.21468 * 120.00178 * 0.28252 * 23 22 21 25 25 O 1.34712 * 119.99928 * 180.27540 * 23 22 21 26 26 C 1.39662 * 119.76420 * 0.54908 * 22 21 20 27 27 C 1.37970 * 119.99657 * 359.72324 * 26 22 21 28 28 C 1.38271 * 120.22354 * 0.02562 * 27 26 22 29 29 C 1.50696 * 119.88103 * 179.97438 * 28 27 26 30 30 H 1.09001 * 109.46742 * 304.51541 * 1 2 3 31 31 H 1.09001 * 109.47167 * 64.51202 * 1 2 3 32 32 H 1.08999 * 109.47306 * 184.51605 * 1 2 3 33 33 H 1.09003 * 109.47285 * 239.99708 * 2 1 3 34 34 H 1.09007 * 109.46902 * 120.00156 * 2 1 3 35 35 H 0.96997 * 120.00189 * 180.02562 * 8 7 5 36 36 H 1.00898 * 110.99713 * 318.73288 * 13 3 2 37 37 H 1.08994 * 109.47240 * 179.97438 * 16 14 13 38 38 H 1.09004 * 109.46348 * 300.00302 * 16 14 13 39 39 H 1.09004 * 109.46639 * 59.99697 * 16 14 13 40 40 H 0.97002 * 119.99913 * 356.37423 * 19 17 14 41 41 H 1.08003 * 120.10650 * 359.97438 * 21 20 19 42 42 H 0.96699 * 116.99605 * 180.02562 * 25 23 22 43 43 H 1.08003 * 120.00665 * 179.70258 * 26 22 21 44 44 H 1.07995 * 119.88948 * 179.97438 * 27 26 22 45 45 H 1.09003 * 109.46737 * 270.01840 * 29 28 27 46 46 H 1.08999 * 109.47242 * 30.01486 * 29 28 27 47 47 H 1.08997 * 109.47150 * 150.01856 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1257 1.4440 -0.0973 5 6 1.4309 2.1907 -1.1577 6 1 0.8226 3.0643 -0.9760 7 6 1.6503 1.7598 -2.4490 8 7 1.1184 2.4124 -3.4593 9 14 2.7020 0.2483 -2.7632 10 1 1.8406 -0.9614 -2.7703 11 1 3.3793 0.3812 -4.0781 12 1 3.7221 0.1234 -1.6913 13 7 1.6604 2.0961 1.2596 14 6 2.6129 1.7708 2.3295 15 1 2.9815 0.7544 2.1911 16 6 3.7875 2.7502 2.2818 17 6 1.9237 1.8777 3.6654 18 8 0.7539 2.1933 3.7207 19 7 2.6071 1.6226 4.7986 20 6 1.9873 1.7897 6.0423 21 6 0.6281 1.5528 6.1767 22 6 0.0161 1.7152 7.4198 23 6 -1.4308 1.4590 7.5729 24 8 -2.0889 1.1014 6.6165 25 8 -2.0204 1.6220 8.7731 26 6 0.7750 2.1265 8.5177 27 6 2.1260 2.3651 8.3719 28 6 2.7333 2.1990 7.1408 29 6 4.2094 2.4623 6.9902 30 1 -0.3633 0.5823 0.8468 31 1 -0.3633 0.4422 -0.9277 32 1 -0.3634 -1.0244 0.0809 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.2724 2.1091 -4.3676 36 1 0.7191 1.8487 1.5259 37 1 4.4940 2.5091 3.0760 38 1 4.2859 2.6729 1.3155 39 1 3.4187 3.7666 2.4202 40 1 3.5274 1.3193 4.7522 41 1 0.0457 1.2396 5.3227 42 1 -2.9692 1.4420 8.8241 43 1 0.3043 2.2581 9.4808 44 1 2.7111 2.6835 9.2220 45 1 4.3666 3.5075 6.7237 46 1 4.7148 2.2474 7.9317 47 1 4.6144 1.8226 6.2061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:50 Heat of formation + Delta-G solvation = -90.988723 kcal Electronic energy + Delta-G solvation = -29108.571703 eV Core-core repulsion = 25063.598312 eV Total energy + Delta-G solvation = -4044.973390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10006 -40.19963 -38.80747 -36.80948 -36.28574 -35.06691 -33.38259 -33.03364 -31.66726 -30.14912 -28.69511 -28.00439 -26.63028 -24.54559 -23.68238 -23.22553 -22.52045 -21.15934 -20.32285 -19.23492 -18.55366 -17.98529 -17.32737 -16.47047 -16.21643 -15.86714 -15.66196 -15.51158 -15.31213 -15.02306 -14.65523 -14.08722 -13.99980 -13.71432 -13.57637 -13.34891 -13.12203 -12.92693 -12.80867 -12.49578 -12.42688 -12.08887 -12.00614 -11.99863 -11.77889 -11.68867 -11.41136 -11.04625 -10.84650 -10.73048 -10.65535 -10.60133 -10.44693 -9.89255 -9.65114 -9.38875 -9.15563 -9.10596 -8.54434 -8.38477 -7.53459 -6.03302 -3.99555 0.38711 1.03578 2.23288 2.60683 2.65334 2.96015 3.25620 3.32292 3.37135 3.50328 4.40179 4.41892 4.44705 4.61997 4.74504 4.80200 4.85004 4.99952 5.17575 5.22684 5.25732 5.28420 5.33404 5.45126 5.55880 5.66723 5.79701 5.89170 5.93380 5.96214 6.01504 6.07442 6.07980 6.15940 6.18348 6.25061 6.46289 6.53893 6.66055 6.74805 6.82334 6.98432 7.16414 7.26917 7.68413 7.68689 7.84681 8.04719 8.31216 8.68804 9.09567 9.58643 11.10157 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.002912 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.950451 B = 9611.864422 C =10773.210358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.161 4.161 3 C 0.186 3.814 4 H 0.036 0.964 5 C -0.490 4.490 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.654 5.654 14 C 0.066 3.934 15 H 0.066 0.934 16 C -0.134 4.134 17 C 0.513 3.487 18 O -0.502 6.502 19 N -0.675 5.675 20 C 0.141 3.859 21 C -0.057 4.057 22 C -0.117 4.117 23 C 0.525 3.475 24 O -0.503 6.503 25 O -0.515 6.515 26 C -0.078 4.078 27 C -0.117 4.117 28 C -0.079 4.079 29 C -0.116 4.116 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.050 0.950 34 H 0.030 0.970 35 H 0.263 0.737 36 H 0.349 0.651 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.411 0.589 41 H 0.160 0.840 42 H 0.414 0.586 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.921 -3.028 27.014 27.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.077 3.923 4 H 0.054 0.946 5 C -0.528 4.528 6 H 0.101 0.899 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.196 1.196 13 N -0.290 5.290 14 C -0.047 4.047 15 H 0.083 0.917 16 C -0.192 4.192 17 C 0.301 3.699 18 O -0.374 6.374 19 N -0.322 5.322 20 C 0.047 3.953 21 C -0.077 4.077 22 C -0.118 4.118 23 C 0.369 3.631 24 O -0.391 6.391 25 O -0.327 6.327 26 C -0.097 4.097 27 C -0.136 4.136 28 C -0.081 4.081 29 C -0.173 4.173 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.173 0.827 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.249 0.751 41 H 0.177 0.823 42 H 0.273 0.727 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.593 -2.194 26.300 26.977 hybrid contribution 0.105 -2.140 -0.131 2.147 sum 5.698 -4.334 26.169 27.131 Atomic orbital electron populations 1.21610 0.95559 0.98876 1.03284 1.22542 0.97552 1.01069 0.98806 1.19787 0.96134 0.88222 0.88128 0.94588 1.20841 1.31229 1.12807 0.87940 0.89885 1.24878 0.95563 0.96545 0.96133 1.69876 1.44858 1.40188 0.98880 0.86983 0.81104 0.83997 0.76833 1.20624 1.22449 1.19567 1.60779 1.04948 1.62201 1.01045 1.21537 0.95624 0.99348 0.88233 0.91675 1.21763 0.95340 0.99753 1.02324 1.21375 0.87284 0.75297 0.85943 1.90713 1.15970 1.44268 1.86481 1.43655 1.17141 1.67708 1.03683 1.17401 0.92063 1.00405 0.85468 1.21503 0.93772 0.95349 0.97113 1.18841 0.89834 1.08189 0.94967 1.20855 0.88538 0.73688 0.80031 1.90946 1.65311 1.42800 1.40089 1.84530 1.30675 1.82569 1.34908 1.21376 0.93731 0.96352 0.98214 1.20818 0.94510 1.01579 0.96658 1.20002 0.96873 0.98328 0.92946 1.20799 0.90735 1.02781 1.02987 0.93472 0.90517 0.95154 0.93165 0.95123 0.92700 0.82746 0.93271 0.90678 0.91389 0.75109 0.82305 0.72745 0.84412 0.84741 0.90193 0.90704 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.37 37.16 0.35 -2.51 16 2 C -0.16 -3.42 5.19 -26.73 -0.14 -3.56 16 3 C 0.19 4.25 1.75 -68.86 -0.12 4.13 16 4 H 0.04 0.83 6.26 -51.93 -0.33 0.51 16 5 C -0.49 -13.49 8.01 -34.44 -0.28 -13.76 16 6 H 0.08 2.57 8.06 -52.49 -0.42 2.14 16 7 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 9 Si 0.88 21.48 24.32 -169.99 -4.13 17.34 16 10 H -0.28 -6.71 6.92 56.52 0.39 -6.32 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.65 -13.45 5.92 -102.17 -0.61 -14.05 16 14 C 0.07 1.05 2.81 -68.86 -0.19 0.85 16 15 H 0.07 0.96 6.93 -51.93 -0.36 0.60 16 16 C -0.13 -1.81 9.31 37.16 0.35 -1.46 16 17 C 0.51 7.79 7.03 -10.99 -0.08 7.72 16 18 O -0.50 -9.51 12.93 5.55 0.07 -9.44 16 19 N -0.67 -7.55 4.92 -9.89 -0.05 -7.60 16 20 C 0.14 1.65 6.32 -83.74 -0.53 1.12 16 21 C -0.06 -0.79 8.25 -38.97 -0.32 -1.11 16 22 C -0.12 -1.40 5.87 -105.01 -0.62 -2.01 16 23 C 0.53 6.49 8.27 34.61 0.29 6.77 16 24 O -0.50 -8.12 17.13 -19.24 -0.33 -8.45 16 25 O -0.51 -4.26 12.68 -40.52 -0.51 -4.77 16 26 C -0.08 -0.70 9.61 -39.15 -0.38 -1.07 16 27 C -0.12 -0.90 9.67 -39.67 -0.38 -1.29 16 28 C -0.08 -0.69 5.90 -104.34 -0.62 -1.30 16 29 C -0.12 -0.66 9.76 36.00 0.35 -0.31 16 30 H 0.05 0.96 6.31 -51.93 -0.33 0.63 16 31 H 0.08 1.81 7.20 -51.93 -0.37 1.43 16 32 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 1.13 3.43 -51.93 -0.18 0.95 16 34 H 0.03 0.57 7.21 -51.92 -0.37 0.20 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.35 7.51 5.24 -39.29 -0.21 7.30 16 37 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 38 H 0.07 1.11 7.48 -51.93 -0.39 0.72 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.41 3.23 6.66 -40.82 -0.27 2.96 16 41 H 0.16 2.68 5.64 -52.48 -0.30 2.39 16 42 H 0.41 1.64 9.11 45.56 0.42 2.05 16 43 H 0.14 0.95 7.61 -52.48 -0.40 0.55 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 47 H 0.06 0.32 6.47 -51.93 -0.34 -0.02 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -35.24 375.04 -7.08 -42.32 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -5.53 Total: 11.41 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -2.41 Total: -5.92 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.12 Total: -48.15 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.77 Total: -22.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.13 Total: 17.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.24 -7.08 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.673 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds