Wall clock time and date at job start Tue Mar 31 2020 17:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47473 * 2 1 4 4 H 1.08999 * 109.47418 * 185.43039 * 3 2 1 5 5 C 1.50707 * 109.47177 * 305.43182 * 3 2 1 6 6 H 1.07999 * 120.00174 * 119.99611 * 5 3 2 7 7 C 1.37881 * 119.99647 * 299.99676 * 5 3 2 8 8 N 1.31511 * 119.99900 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 119.99893 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47582 * 90.00058 * 9 7 5 11 11 H 1.48507 * 109.46560 * 209.99536 * 9 7 5 12 12 H 1.48501 * 109.47232 * 329.99393 * 9 7 5 13 13 N 1.46903 * 109.47161 * 65.43026 * 3 2 1 14 14 C 1.46893 * 110.99946 * 82.68711 * 13 3 2 15 15 H 1.08997 * 109.47329 * 326.10661 * 14 13 3 16 16 C 1.53007 * 109.47381 * 86.10850 * 14 13 3 17 17 C 1.50702 * 109.47317 * 206.10548 * 14 13 3 18 18 O 1.21292 * 119.99800 * 0.02562 * 17 14 13 19 19 N 1.34775 * 120.00320 * 180.02562 * 17 14 13 20 20 C 1.39955 * 119.99805 * 176.65320 * 19 17 14 21 21 C 1.38624 * 120.00282 * 32.38674 * 20 19 17 22 22 C 1.39509 * 119.77672 * 179.72537 * 21 20 19 23 23 C 1.47737 * 120.11645 * 180.26767 * 22 21 20 24 24 O 1.21468 * 120.00178 * 0.28252 * 23 22 21 25 25 O 1.34712 * 119.99928 * 180.27540 * 23 22 21 26 26 C 1.39662 * 119.76420 * 0.54908 * 22 21 20 27 27 C 1.37970 * 119.99657 * 359.72324 * 26 22 21 28 28 C 1.38271 * 120.22354 * 0.02562 * 27 26 22 29 29 C 1.50696 * 119.88103 * 179.97438 * 28 27 26 30 30 H 1.09001 * 109.46742 * 304.51541 * 1 2 3 31 31 H 1.09001 * 109.47167 * 64.51202 * 1 2 3 32 32 H 1.08999 * 109.47306 * 184.51605 * 1 2 3 33 33 H 1.09003 * 109.47285 * 239.99708 * 2 1 3 34 34 H 1.09007 * 109.46902 * 120.00156 * 2 1 3 35 35 H 0.96997 * 120.00189 * 180.02562 * 8 7 5 36 36 H 1.00898 * 110.99713 * 318.73288 * 13 3 2 37 37 H 1.08994 * 109.47240 * 179.97438 * 16 14 13 38 38 H 1.09004 * 109.46348 * 300.00302 * 16 14 13 39 39 H 1.09004 * 109.46639 * 59.99697 * 16 14 13 40 40 H 0.97002 * 119.99913 * 356.37423 * 19 17 14 41 41 H 1.08003 * 120.10650 * 359.97438 * 21 20 19 42 42 H 0.96699 * 116.99605 * 180.02562 * 25 23 22 43 43 H 1.08003 * 120.00665 * 179.70258 * 26 22 21 44 44 H 1.07995 * 119.88948 * 179.97438 * 27 26 22 45 45 H 1.09003 * 109.46737 * 270.01840 * 29 28 27 46 46 H 1.08999 * 109.47242 * 30.01486 * 29 28 27 47 47 H 1.08997 * 109.47150 * 150.01856 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1257 1.4440 -0.0973 5 6 1.4309 2.1907 -1.1577 6 1 0.8226 3.0643 -0.9760 7 6 1.6503 1.7598 -2.4490 8 7 1.1184 2.4124 -3.4593 9 14 2.7020 0.2483 -2.7632 10 1 1.8406 -0.9614 -2.7703 11 1 3.3793 0.3812 -4.0781 12 1 3.7221 0.1234 -1.6913 13 7 1.6604 2.0961 1.2596 14 6 2.6129 1.7708 2.3295 15 1 2.9815 0.7544 2.1911 16 6 3.7875 2.7502 2.2818 17 6 1.9237 1.8777 3.6654 18 8 0.7539 2.1933 3.7207 19 7 2.6071 1.6226 4.7986 20 6 1.9873 1.7897 6.0423 21 6 0.6281 1.5528 6.1767 22 6 0.0161 1.7152 7.4198 23 6 -1.4308 1.4590 7.5729 24 8 -2.0889 1.1014 6.6165 25 8 -2.0204 1.6220 8.7731 26 6 0.7750 2.1265 8.5177 27 6 2.1260 2.3651 8.3719 28 6 2.7333 2.1990 7.1408 29 6 4.2094 2.4623 6.9902 30 1 -0.3633 0.5823 0.8468 31 1 -0.3633 0.4422 -0.9277 32 1 -0.3634 -1.0244 0.0809 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.2724 2.1091 -4.3676 36 1 0.7191 1.8487 1.5259 37 1 4.4940 2.5091 3.0760 38 1 4.2859 2.6729 1.3155 39 1 3.4187 3.7666 2.4202 40 1 3.5274 1.3193 4.7522 41 1 0.0457 1.2396 5.3227 42 1 -2.9692 1.4420 8.8241 43 1 0.3043 2.2581 9.4808 44 1 2.7111 2.6835 9.2220 45 1 4.3666 3.5075 6.7237 46 1 4.7148 2.2474 7.9317 47 1 4.6144 1.8226 6.2061 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030881.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:49 Heat of formation + Delta-G solvation = -118.626476 kcal Electronic energy + Delta-G solvation = -29109.770165 eV Core-core repulsion = 25063.598312 eV Total energy + Delta-G solvation = -4046.171853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.05918 -41.19631 -39.78715 -38.37777 -37.16159 -36.07660 -34.99894 -33.78105 -33.57718 -31.17827 -30.01456 -28.70499 -28.45320 -25.69963 -25.09223 -24.46898 -23.48960 -21.98690 -21.62105 -20.77413 -19.48841 -19.06353 -18.59626 -18.00900 -17.41438 -17.01985 -16.78876 -16.70361 -16.42067 -16.12947 -15.86207 -15.32753 -14.97464 -14.89930 -14.71110 -14.66672 -14.44502 -14.33364 -14.30698 -13.44659 -13.38149 -13.17275 -13.10308 -12.90492 -12.75884 -12.63821 -12.60494 -12.53594 -12.42579 -12.40881 -12.26038 -11.82548 -11.70513 -11.54770 -11.27503 -11.14565 -10.78718 -10.68376 -9.90784 -9.24591 -9.11925 -8.22677 -6.23748 -0.41907 0.21698 1.31179 1.32205 1.35407 1.46064 1.54769 1.78729 2.06777 2.34936 2.70753 3.11711 3.40017 3.55564 3.76260 3.84438 4.02972 4.09674 4.12413 4.15794 4.21885 4.26437 4.32804 4.42806 4.45256 4.73053 4.74374 4.80834 4.82419 4.87260 4.95068 5.03712 5.10014 5.14901 5.22721 5.23790 5.25180 5.32850 5.36123 5.40540 5.47711 5.51767 5.70250 5.85890 5.99198 6.27629 6.61492 6.69605 6.81690 6.90035 7.01431 7.39105 8.95192 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016525 B = 0.002912 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.950451 B = 9611.864422 C =10773.210358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.045 0.955 5 C -0.490 4.490 6 H 0.028 0.972 7 C 0.012 3.988 8 N -0.953 5.953 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.300 1.300 12 H -0.238 1.238 13 N -0.675 5.675 14 C 0.064 3.936 15 H 0.088 0.912 16 C -0.129 4.129 17 C 0.515 3.485 18 O -0.550 6.550 19 N -0.652 5.652 20 C 0.119 3.881 21 C -0.086 4.086 22 C -0.142 4.142 23 C 0.528 3.472 24 O -0.556 6.556 25 O -0.497 6.497 26 C -0.064 4.064 27 C -0.109 4.109 28 C -0.063 4.063 29 C -0.119 4.119 30 H 0.043 0.957 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.339 0.661 37 H 0.099 0.901 38 H 0.063 0.937 39 H 0.050 0.950 40 H 0.429 0.571 41 H 0.116 0.884 42 H 0.433 0.567 43 H 0.163 0.837 44 H 0.178 0.822 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.691 -4.506 31.008 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.198 4.198 3 C 0.084 3.916 4 H 0.063 0.937 5 C -0.528 4.528 6 H 0.046 0.954 7 C -0.184 4.184 8 N -0.594 5.594 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.228 1.228 12 H -0.162 1.162 13 N -0.310 5.310 14 C -0.049 4.049 15 H 0.105 0.895 16 C -0.187 4.187 17 C 0.303 3.697 18 O -0.426 6.426 19 N -0.300 5.300 20 C 0.025 3.975 21 C -0.107 4.107 22 C -0.143 4.143 23 C 0.374 3.626 24 O -0.449 6.449 25 O -0.311 6.311 26 C -0.082 4.082 27 C -0.127 4.127 28 C -0.066 4.066 29 C -0.175 4.175 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.271 0.729 41 H 0.134 0.866 42 H 0.295 0.705 43 H 0.181 0.819 44 H 0.195 0.805 45 H 0.104 0.896 46 H 0.120 0.880 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.409 -3.680 30.388 32.023 hybrid contribution -1.128 -1.555 -1.163 2.246 sum 8.281 -5.234 29.225 30.823 Atomic orbital electron populations 1.21533 0.95978 1.00154 1.01243 1.22477 0.97239 0.99869 1.00176 1.19544 0.95873 0.88713 0.87451 0.93717 1.21046 1.30145 1.11443 0.90212 0.95367 1.25731 0.97066 0.99986 0.95649 1.70054 1.47261 1.42673 0.99454 0.85921 0.79916 0.79734 0.77262 1.19693 1.22838 1.16202 1.60621 1.05552 1.62803 1.02005 1.21673 0.95006 1.01134 0.87120 0.89462 1.21773 0.95109 0.98206 1.03613 1.21241 0.86654 0.75029 0.86767 1.90723 1.18022 1.46749 1.87077 1.43308 1.17517 1.66518 1.02686 1.17551 0.91604 1.02108 0.86272 1.21297 0.94946 0.97684 0.96787 1.18952 0.89902 1.09969 0.95510 1.21091 0.88905 0.72418 0.80152 1.90922 1.66489 1.45535 1.41939 1.84477 1.32364 1.81667 1.32575 1.21708 0.94289 0.94277 0.97951 1.21346 0.94115 0.99757 0.97491 1.20412 0.98407 0.95795 0.91979 1.20956 0.88274 1.03310 1.05004 0.93775 0.94087 0.92413 0.93619 0.91544 0.92755 0.83850 0.88214 0.91804 0.93128 0.72947 0.86561 0.70534 0.81910 0.80516 0.89634 0.88040 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.57 9.37 71.98 0.67 -4.90 16 2 C -0.16 -6.50 5.19 30.59 0.16 -6.35 16 3 C 0.19 8.81 1.75 44.17 0.08 8.89 16 4 H 0.05 1.97 6.26 -2.39 -0.01 1.96 16 5 C -0.49 -28.19 8.01 25.60 0.20 -27.99 16 6 H 0.03 1.88 8.06 -2.91 -0.02 1.85 16 7 C 0.01 0.70 5.39 84.66 0.46 1.16 16 8 N -0.95 -60.57 13.96 21.45 0.30 -60.27 16 9 Si 0.94 44.14 24.32 68.60 1.67 45.80 16 10 H -0.27 -12.22 6.92 99.48 0.69 -11.53 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 12 H -0.24 -9.85 6.53 99.48 0.65 -9.20 16 13 N -0.67 -28.32 5.92 -477.15 -2.83 -31.15 16 14 C 0.06 1.93 2.81 44.17 0.12 2.06 16 15 H 0.09 2.28 6.93 -2.39 -0.02 2.26 16 16 C -0.13 -3.21 9.31 71.98 0.67 -2.54 16 17 C 0.51 15.54 7.03 87.66 0.62 16.16 16 18 O -0.55 -22.05 12.93 -3.07 -0.04 -22.09 16 19 N -0.65 -13.42 4.92 -303.60 -1.49 -14.92 16 20 C 0.12 2.61 6.32 38.11 0.24 2.85 16 21 C -0.09 -2.48 8.25 22.67 0.19 -2.29 16 22 C -0.14 -3.38 5.87 -20.12 -0.12 -3.50 16 23 C 0.53 13.45 8.27 70.33 0.58 14.03 16 24 O -0.56 -19.38 17.13 19.94 0.34 -19.04 16 25 O -0.50 -7.69 12.68 -56.22 -0.71 -8.41 16 26 C -0.06 -0.95 9.61 22.55 0.22 -0.73 16 27 C -0.11 -1.18 9.67 22.21 0.21 -0.97 16 28 C -0.06 -0.87 5.90 -19.68 -0.12 -0.98 16 29 C -0.12 -0.73 9.76 71.23 0.70 -0.04 16 30 H 0.04 1.86 6.31 -2.39 -0.02 1.85 16 31 H 0.04 2.00 7.20 -2.39 -0.02 1.98 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.92 3.43 -2.39 -0.01 1.92 16 34 H 0.07 2.27 7.21 -2.38 -0.02 2.25 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.34 15.31 5.24 -89.70 -0.47 14.84 16 37 H 0.10 1.43 7.65 -2.39 -0.02 1.42 16 38 H 0.06 1.75 7.48 -2.39 -0.02 1.73 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.43 5.19 6.66 -92.71 -0.62 4.57 16 41 H 0.12 4.35 5.64 -2.91 -0.02 4.33 16 42 H 0.43 3.01 9.11 -74.06 -0.67 2.33 16 43 H 0.16 1.58 7.61 -2.91 -0.02 1.55 16 44 H 0.18 0.50 8.06 -2.91 -0.02 0.48 16 45 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.10 0.16 8.08 -2.39 -0.02 0.14 16 47 H 0.08 0.33 6.47 -2.39 -0.02 0.31 16 Total: -1.00 -86.00 375.04 1.33 -84.67 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.79 Total: 30.56 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: 4.88 Total: -5.16 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -4.02 Total: -106.34 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.41 Total: -49.53 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.67 Total: 45.80 kcal Total: -86.00 1.33 -84.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030881.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.957 kcal (2) G-P(sol) polarization free energy of solvation -86.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds