Wall clock time and date at job start Tue Mar 31 2020 17:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 H 1.08998 * 109.47047 * 177.75931 * 3 2 1 5 5 C 1.50698 * 109.47019 * 57.76082 * 3 2 1 6 6 H 1.08008 * 119.99987 * 240.00057 * 5 3 2 7 7 C 1.37875 * 120.00110 * 60.00183 * 5 3 2 8 8 N 1.31508 * 120.00163 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99868 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47178 * 89.99876 * 9 7 5 11 11 H 1.48501 * 109.47019 * 210.00243 * 9 7 5 12 12 H 1.48501 * 109.47450 * 329.99863 * 9 7 5 13 13 N 1.46900 * 109.46806 * 297.75954 * 3 2 1 14 14 C 1.46896 * 111.00275 * 274.03281 * 13 3 2 15 15 H 1.09001 * 109.46894 * 37.33235 * 14 13 3 16 16 C 1.52997 * 109.47452 * 277.32974 * 14 13 3 17 17 C 1.50704 * 109.47125 * 157.32649 * 14 13 3 18 18 O 1.21284 * 120.00009 * 0.02562 * 17 14 13 19 19 N 1.34777 * 119.99704 * 179.97438 * 17 14 13 20 20 C 1.39951 * 119.99687 * 185.02237 * 19 17 14 21 21 C 1.38624 * 119.99786 * 331.19600 * 20 19 17 22 22 C 1.39516 * 119.77360 * 179.79515 * 21 20 19 23 23 C 1.47739 * 120.11845 * 180.22825 * 22 21 20 24 24 O 1.21468 * 120.00041 * 0.25499 * 23 22 21 25 25 O 1.34709 * 119.99907 * 180.24684 * 23 22 21 26 26 C 1.39674 * 119.76450 * 0.47798 * 22 21 20 27 27 C 1.37966 * 119.99222 * 359.74961 * 26 22 21 28 28 C 1.38262 * 120.22643 * 0.02562 * 27 26 22 29 29 C 1.50704 * 119.88055 * 179.97438 * 28 27 26 30 30 H 1.08993 * 109.47256 * 58.74737 * 1 2 3 31 31 H 1.08997 * 109.47625 * 298.74327 * 1 2 3 32 32 H 1.09008 * 109.46863 * 178.74432 * 1 2 3 33 33 H 1.09004 * 109.46876 * 120.00257 * 2 1 3 34 34 H 1.08997 * 109.47278 * 239.99615 * 2 1 3 35 35 H 0.97004 * 120.00483 * 179.97438 * 8 7 5 36 36 H 1.00900 * 111.00260 * 37.99486 * 13 3 2 37 37 H 1.09001 * 109.47284 * 300.00022 * 16 14 13 38 38 H 1.09003 * 109.47276 * 59.99878 * 16 14 13 39 39 H 1.08996 * 109.47510 * 179.97438 * 16 14 13 40 40 H 0.97002 * 120.00011 * 5.02834 * 19 17 14 41 41 H 1.07998 * 120.11829 * 0.02562 * 21 20 19 42 42 H 0.96708 * 116.99884 * 179.97438 * 25 23 22 43 43 H 1.08005 * 120.00123 * 179.72922 * 26 22 21 44 44 H 1.07998 * 119.88483 * 179.97438 * 27 26 22 45 45 H 1.09003 * 109.46624 * 270.02135 * 29 28 27 46 46 H 1.08998 * 109.47130 * 30.02165 * 29 28 27 47 47 H 1.09001 * 109.46666 * 150.02128 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0402 5 6 1.4928 2.1687 1.2018 6 1 0.8761 3.0453 1.0684 7 6 1.7794 1.7141 2.4715 8 7 2.5299 0.6465 2.6338 9 14 1.1018 2.6148 3.9611 10 1 -0.2207 2.0454 4.3245 11 1 2.0387 2.4584 5.1026 12 1 0.9486 4.0567 3.6405 13 7 1.5950 2.1191 -1.2256 14 6 2.5324 1.8774 -2.3305 15 1 2.9066 0.8552 -2.2723 16 6 3.7040 2.8560 -2.2288 17 6 1.8225 2.0783 -3.6446 18 8 0.6512 2.3925 -3.6593 19 7 2.4897 1.9099 -4.8035 20 6 1.8617 2.1980 -6.0206 21 6 0.4862 2.0723 -6.1376 22 6 -0.1354 2.3648 -7.3519 23 6 -1.6015 2.2382 -7.4836 24 8 -2.2684 1.8834 -6.5324 25 8 -2.1987 2.5165 -8.6586 26 6 0.6338 2.7727 -8.4440 27 6 2.0026 2.8900 -8.3181 28 6 2.6178 2.6045 -7.1133 29 6 4.1137 2.7347 -6.9846 30 1 -0.3633 0.5331 -0.8785 31 1 -0.3634 0.4942 0.9010 32 1 -0.3633 -1.0275 -0.0225 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 2.7319 0.3268 3.5271 36 1 0.6597 1.8353 -1.4762 37 1 3.3297 3.8781 -2.2869 38 1 4.2174 2.7107 -1.2783 39 1 4.3997 2.6764 -3.0483 40 1 3.4050 1.5890 -4.7939 41 1 -0.1028 1.7525 -5.2907 42 1 -3.1600 2.4189 -8.6965 43 1 0.1570 2.9959 -9.3871 44 1 2.5958 3.2052 -9.1639 45 1 4.5844 1.7860 -7.2425 46 1 4.4701 3.5126 -7.6599 47 1 4.3683 2.9997 -5.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:53 Heat of formation + Delta-G solvation = -99.243898 kcal Electronic energy + Delta-G solvation = -29007.982001 eV Core-core repulsion = 24962.650640 eV Total energy + Delta-G solvation = -4045.331361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.04436 -40.14119 -38.71058 -36.51881 -36.24582 -35.00021 -33.29661 -32.96630 -31.33039 -30.00311 -28.47099 -27.92367 -26.19405 -24.46100 -23.68120 -23.26491 -22.35922 -21.10593 -20.17955 -19.00636 -18.47496 -17.92134 -17.23068 -16.39098 -15.93619 -15.81801 -15.56985 -15.41858 -15.01794 -14.91624 -14.57452 -14.07161 -13.95783 -13.64808 -13.50838 -13.08157 -12.85351 -12.72875 -12.68056 -12.36832 -12.16996 -12.01951 -11.91322 -11.73013 -11.62831 -11.59096 -11.20297 -10.91470 -10.80352 -10.71467 -10.58771 -10.52295 -9.99860 -9.89686 -9.59284 -9.46014 -9.08588 -8.96573 -8.33801 -8.30006 -7.30824 -5.97861 -3.98931 0.44047 1.10493 2.28079 2.69449 2.71270 3.02705 3.34377 3.40917 3.46278 3.56180 4.45175 4.46905 4.50563 4.75324 4.80181 4.87037 5.03532 5.10824 5.23327 5.25440 5.34118 5.35721 5.47958 5.60488 5.62071 5.72080 5.95495 5.96694 6.07738 6.14238 6.19946 6.22593 6.29302 6.34468 6.39190 6.55438 6.58245 6.73926 6.90654 7.15515 7.25144 7.29913 7.48668 7.70156 7.72587 7.88922 8.12510 8.26045 8.52441 8.59037 9.07419 9.64988 11.09240 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.002780 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.877098 B =10070.821521 C =11195.999022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.667 5.667 14 C 0.071 3.929 15 H 0.064 0.936 16 C -0.132 4.132 17 C 0.513 3.487 18 O -0.502 6.502 19 N -0.673 5.673 20 C 0.144 3.856 21 C -0.065 4.065 22 C -0.116 4.116 23 C 0.525 3.475 24 O -0.503 6.503 25 O -0.515 6.515 26 C -0.081 4.081 27 C -0.116 4.116 28 C -0.083 4.083 29 C -0.121 4.121 30 H 0.032 0.968 31 H 0.066 0.934 32 H 0.024 0.976 33 H 0.097 0.903 34 H 0.008 0.992 35 H 0.259 0.741 36 H 0.343 0.657 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.413 0.587 41 H 0.166 0.834 42 H 0.413 0.587 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.862 1.687 -24.434 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.188 4.188 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.525 4.525 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.303 5.303 14 C -0.043 4.043 15 H 0.081 0.919 16 C -0.191 4.191 17 C 0.302 3.698 18 O -0.375 6.375 19 N -0.319 5.319 20 C 0.048 3.952 21 C -0.085 4.085 22 C -0.118 4.118 23 C 0.369 3.631 24 O -0.391 6.391 25 O -0.327 6.327 26 C -0.100 4.100 27 C -0.135 4.135 28 C -0.085 4.085 29 C -0.178 4.178 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.166 0.834 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.249 0.751 41 H 0.184 0.816 42 H 0.272 0.728 43 H 0.155 0.845 44 H 0.152 0.848 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.620 2.367 -23.724 23.986 hybrid contribution -0.754 -0.789 0.590 1.240 sum 1.866 1.578 -23.134 23.263 Atomic orbital electron populations 1.21594 0.97619 0.98304 1.01412 1.22151 0.95069 1.01175 1.00368 1.19293 0.95698 0.88352 0.85799 0.94599 1.21047 1.30654 1.11516 0.89293 0.91878 1.24892 0.95459 0.95171 0.98805 1.69863 1.38204 1.23516 1.22170 0.86552 0.78627 0.80295 0.82282 1.20845 1.21470 1.19869 1.60925 1.04405 1.63066 1.01930 1.21468 0.95400 0.99273 0.88183 0.91861 1.21751 0.95499 0.99609 1.02204 1.21482 0.87451 0.75316 0.85573 1.90663 1.15938 1.44184 1.86676 1.43669 1.17808 1.66510 1.03930 1.17466 0.91680 1.00043 0.85966 1.21715 0.93665 0.95723 0.97380 1.18863 0.89259 1.08160 0.95502 1.20871 0.89001 0.73433 0.79832 1.90946 1.65834 1.42966 1.39363 1.84534 1.29152 1.82189 1.36846 1.21362 0.93687 0.96960 0.98025 1.20796 0.94272 1.01574 0.96814 1.19960 0.96588 0.98795 0.93198 1.20845 0.90589 1.02922 1.03445 0.94879 0.91544 0.95695 0.88489 0.97319 0.93122 0.83421 0.91695 0.90520 0.93474 0.75061 0.81640 0.72809 0.84510 0.84824 0.90492 0.90587 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.41 37.16 0.35 -2.56 16 2 C -0.15 -3.44 5.53 -26.73 -0.15 -3.59 16 3 C 0.22 5.20 2.13 -68.87 -0.15 5.05 16 4 H 0.04 0.92 6.94 -51.93 -0.36 0.56 16 5 C -0.49 -13.10 7.49 -34.44 -0.26 -13.36 16 6 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -24.90 11.34 55.43 0.63 -24.28 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.67 -14.28 5.89 -102.17 -0.60 -14.88 16 14 C 0.07 1.19 2.85 -68.87 -0.20 0.99 16 15 H 0.06 1.03 7.18 -51.93 -0.37 0.66 16 16 C -0.13 -1.94 9.27 37.16 0.34 -1.59 16 17 C 0.51 8.22 7.06 -10.98 -0.08 8.14 16 18 O -0.50 -9.85 12.75 5.55 0.07 -9.77 16 19 N -0.67 -8.03 4.74 -9.89 -0.05 -8.08 16 20 C 0.14 1.76 6.38 -83.74 -0.53 1.23 16 21 C -0.06 -0.93 8.31 -38.96 -0.32 -1.26 16 22 C -0.12 -1.45 5.87 -105.00 -0.62 -2.07 16 23 C 0.52 6.71 8.27 34.61 0.29 7.00 16 24 O -0.50 -8.33 17.13 -19.24 -0.33 -8.66 16 25 O -0.52 -4.44 12.68 -40.52 -0.51 -4.96 16 26 C -0.08 -0.76 9.61 -39.15 -0.38 -1.14 16 27 C -0.12 -0.95 9.67 -39.67 -0.38 -1.33 16 28 C -0.08 -0.76 5.90 -104.34 -0.62 -1.38 16 29 C -0.12 -0.75 9.44 36.01 0.34 -0.41 16 30 H 0.03 0.70 6.27 -51.93 -0.33 0.37 16 31 H 0.07 1.59 7.20 -51.93 -0.37 1.22 16 32 H 0.02 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.10 2.51 6.13 -51.93 -0.32 2.20 16 34 H 0.01 0.18 7.45 -51.93 -0.39 -0.21 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.34 7.66 5.17 -39.29 -0.20 7.46 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.25 7.27 -51.93 -0.38 0.87 16 39 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16 40 H 0.41 3.57 7.13 -40.82 -0.29 3.28 16 41 H 0.17 2.93 5.32 -52.49 -0.28 2.65 16 42 H 0.41 1.76 9.11 45.56 0.42 2.18 16 43 H 0.14 1.00 7.61 -52.48 -0.40 0.60 16 44 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 47 H 0.07 0.45 7.04 -51.93 -0.37 0.08 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -33.31 382.07 -8.20 -41.51 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -5.69 Total: 11.80 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.45 Total: -4.84 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.02 Total: -47.23 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.77 Total: -23.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.31 -8.20 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.732 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds