Wall clock time and date at job start Tue Mar 31 2020 17:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47102 * 2 1 4 4 H 1.08998 * 109.47047 * 177.75931 * 3 2 1 5 5 C 1.50698 * 109.47019 * 57.76082 * 3 2 1 6 6 H 1.08008 * 119.99987 * 240.00057 * 5 3 2 7 7 C 1.37875 * 120.00110 * 60.00183 * 5 3 2 8 8 N 1.31508 * 120.00163 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99868 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47178 * 89.99876 * 9 7 5 11 11 H 1.48501 * 109.47019 * 210.00243 * 9 7 5 12 12 H 1.48501 * 109.47450 * 329.99863 * 9 7 5 13 13 N 1.46900 * 109.46806 * 297.75954 * 3 2 1 14 14 C 1.46896 * 111.00275 * 274.03281 * 13 3 2 15 15 H 1.09001 * 109.46894 * 37.33235 * 14 13 3 16 16 C 1.52997 * 109.47452 * 277.32974 * 14 13 3 17 17 C 1.50704 * 109.47125 * 157.32649 * 14 13 3 18 18 O 1.21284 * 120.00009 * 0.02562 * 17 14 13 19 19 N 1.34777 * 119.99704 * 179.97438 * 17 14 13 20 20 C 1.39951 * 119.99687 * 185.02237 * 19 17 14 21 21 C 1.38624 * 119.99786 * 331.19600 * 20 19 17 22 22 C 1.39516 * 119.77360 * 179.79515 * 21 20 19 23 23 C 1.47739 * 120.11845 * 180.22825 * 22 21 20 24 24 O 1.21468 * 120.00041 * 0.25499 * 23 22 21 25 25 O 1.34709 * 119.99907 * 180.24684 * 23 22 21 26 26 C 1.39674 * 119.76450 * 0.47798 * 22 21 20 27 27 C 1.37966 * 119.99222 * 359.74961 * 26 22 21 28 28 C 1.38262 * 120.22643 * 0.02562 * 27 26 22 29 29 C 1.50704 * 119.88055 * 179.97438 * 28 27 26 30 30 H 1.08993 * 109.47256 * 58.74737 * 1 2 3 31 31 H 1.08997 * 109.47625 * 298.74327 * 1 2 3 32 32 H 1.09008 * 109.46863 * 178.74432 * 1 2 3 33 33 H 1.09004 * 109.46876 * 120.00257 * 2 1 3 34 34 H 1.08997 * 109.47278 * 239.99615 * 2 1 3 35 35 H 0.97004 * 120.00483 * 179.97438 * 8 7 5 36 36 H 1.00900 * 111.00260 * 37.99486 * 13 3 2 37 37 H 1.09001 * 109.47284 * 300.00022 * 16 14 13 38 38 H 1.09003 * 109.47276 * 59.99878 * 16 14 13 39 39 H 1.08996 * 109.47510 * 179.97438 * 16 14 13 40 40 H 0.97002 * 120.00011 * 5.02834 * 19 17 14 41 41 H 1.07998 * 120.11829 * 0.02562 * 21 20 19 42 42 H 0.96708 * 116.99884 * 179.97438 * 25 23 22 43 43 H 1.08005 * 120.00123 * 179.72922 * 26 22 21 44 44 H 1.07998 * 119.88483 * 179.97438 * 27 26 22 45 45 H 1.09003 * 109.46624 * 270.02135 * 29 28 27 46 46 H 1.08998 * 109.47130 * 30.02165 * 29 28 27 47 47 H 1.09001 * 109.46666 * 150.02128 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1292 1.4427 0.0402 5 6 1.4928 2.1687 1.2018 6 1 0.8761 3.0453 1.0684 7 6 1.7794 1.7141 2.4715 8 7 2.5299 0.6465 2.6338 9 14 1.1018 2.6148 3.9611 10 1 -0.2207 2.0454 4.3245 11 1 2.0387 2.4584 5.1026 12 1 0.9486 4.0567 3.6405 13 7 1.5950 2.1191 -1.2256 14 6 2.5324 1.8774 -2.3305 15 1 2.9066 0.8552 -2.2723 16 6 3.7040 2.8560 -2.2288 17 6 1.8225 2.0783 -3.6446 18 8 0.6512 2.3925 -3.6593 19 7 2.4897 1.9099 -4.8035 20 6 1.8617 2.1980 -6.0206 21 6 0.4862 2.0723 -6.1376 22 6 -0.1354 2.3648 -7.3519 23 6 -1.6015 2.2382 -7.4836 24 8 -2.2684 1.8834 -6.5324 25 8 -2.1987 2.5165 -8.6586 26 6 0.6338 2.7727 -8.4440 27 6 2.0026 2.8900 -8.3181 28 6 2.6178 2.6045 -7.1133 29 6 4.1137 2.7347 -6.9846 30 1 -0.3633 0.5331 -0.8785 31 1 -0.3634 0.4942 0.9010 32 1 -0.3633 -1.0275 -0.0225 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 2.7319 0.3268 3.5271 36 1 0.6597 1.8353 -1.4762 37 1 3.3297 3.8781 -2.2869 38 1 4.2174 2.7107 -1.2783 39 1 4.3997 2.6764 -3.0483 40 1 3.4050 1.5890 -4.7939 41 1 -0.1028 1.7525 -5.2907 42 1 -3.1600 2.4189 -8.6965 43 1 0.1570 2.9959 -9.3871 44 1 2.5958 3.2052 -9.1639 45 1 4.5844 1.7860 -7.2425 46 1 4.4701 3.5126 -7.6599 47 1 4.3683 2.9997 -5.9584 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030882.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:52 Heat of formation + Delta-G solvation = -122.876466 kcal Electronic energy + Delta-G solvation = -29009.006786 eV Core-core repulsion = 24962.650640 eV Total energy + Delta-G solvation = -4046.356146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05969 -41.17863 -39.73441 -38.18271 -37.15055 -36.07074 -34.99775 -33.74515 -33.17002 -31.09054 -29.89789 -28.68004 -28.06209 -25.78172 -25.13389 -24.42518 -23.42296 -21.97859 -21.52602 -20.67070 -19.44825 -19.00375 -18.50684 -17.70441 -17.41592 -16.86891 -16.72138 -16.67232 -16.40051 -16.09806 -15.88710 -15.22741 -14.78869 -14.76064 -14.73648 -14.48476 -14.41914 -14.24409 -13.95137 -13.40339 -13.18967 -13.10460 -13.05013 -12.83297 -12.75853 -12.63447 -12.62341 -12.57521 -12.45961 -12.41574 -11.89969 -11.82428 -11.75946 -11.57841 -11.49060 -11.00555 -10.69473 -10.41823 -9.88766 -9.21284 -9.01278 -8.06310 -6.13340 -0.40784 0.23617 1.31024 1.41908 1.43899 1.53651 1.57386 1.79848 2.07211 2.46178 2.71986 3.22772 3.55054 3.57847 3.78388 3.85703 4.04247 4.13471 4.15519 4.23576 4.32598 4.46865 4.48179 4.54681 4.68706 4.73160 4.78701 4.84640 4.88277 4.91863 5.07102 5.15641 5.24662 5.26390 5.31888 5.33538 5.34439 5.38404 5.41530 5.52760 5.60684 5.72959 5.82138 5.87792 6.24308 6.33759 6.64785 6.75883 6.91172 6.96206 7.01872 7.53943 8.99034 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016089 B = 0.002780 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.877098 B =10070.821521 C =11195.999022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.141 4.141 3 C 0.225 3.775 4 H 0.019 0.981 5 C -0.502 4.502 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.916 5.916 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.282 1.282 12 H -0.275 1.275 13 N -0.680 5.680 14 C 0.067 3.933 15 H 0.073 0.927 16 C -0.125 4.125 17 C 0.516 3.484 18 O -0.546 6.546 19 N -0.652 5.652 20 C 0.120 3.880 21 C -0.095 4.095 22 C -0.141 4.141 23 C 0.528 3.472 24 O -0.556 6.556 25 O -0.497 6.497 26 C -0.066 4.066 27 C -0.108 4.108 28 C -0.066 4.066 29 C -0.123 4.123 30 H 0.036 0.964 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.260 0.740 36 H 0.335 0.665 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.429 0.571 41 H 0.123 0.877 42 H 0.433 0.567 43 H 0.164 0.836 44 H 0.178 0.822 45 H 0.098 0.902 46 H 0.098 0.902 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.920 2.299 -27.649 28.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.181 4.181 3 C 0.117 3.883 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.063 0.937 7 C -0.180 4.180 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.206 1.206 11 H -0.207 1.207 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.046 4.046 15 H 0.091 0.909 16 C -0.183 4.183 17 C 0.305 3.695 18 O -0.422 6.422 19 N -0.298 5.298 20 C 0.025 3.975 21 C -0.115 4.115 22 C -0.142 4.142 23 C 0.374 3.626 24 O -0.448 6.448 25 O -0.311 6.311 26 C -0.084 4.084 27 C -0.126 4.126 28 C -0.069 4.069 29 C -0.180 4.180 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.156 0.844 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.270 0.730 41 H 0.141 0.859 42 H 0.295 0.705 43 H 0.181 0.819 44 H 0.195 0.805 45 H 0.116 0.884 46 H 0.116 0.884 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.714 2.980 -27.007 27.577 hybrid contribution -1.368 -0.957 1.388 2.171 sum 3.346 2.023 -25.619 25.916 Atomic orbital electron populations 1.21482 0.96873 0.99327 1.00353 1.22011 0.95671 1.00512 0.99907 1.19019 0.94314 0.88705 0.86273 0.96322 1.21240 1.30620 1.11287 0.90910 0.93696 1.25490 0.95723 0.95834 1.00941 1.69960 1.38814 1.24275 1.22620 0.85713 0.78117 0.79109 0.79609 1.20630 1.20748 1.19983 1.60795 1.04867 1.62986 1.02811 1.21570 0.95087 1.00467 0.87474 0.90919 1.21716 0.95176 0.98185 1.03205 1.21225 0.86816 0.75149 0.86330 1.90677 1.17722 1.46513 1.87272 1.43306 1.18155 1.65461 1.02926 1.17618 0.91210 1.01922 0.86739 1.21480 0.94787 0.98065 0.97199 1.18968 0.89354 1.09870 0.96055 1.21083 0.89364 0.72193 0.79913 1.90922 1.66958 1.45683 1.41273 1.84479 1.30946 1.81143 1.34499 1.21705 0.94293 0.94768 0.97667 1.21327 0.93943 0.99752 0.97544 1.20374 0.98228 0.96147 0.92121 1.20996 0.87962 1.04828 1.04180 0.94518 0.93869 0.93646 0.91016 0.95462 0.93065 0.84358 0.92893 0.92383 0.88551 0.73023 0.85941 0.70548 0.81895 0.80500 0.88383 0.88368 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 9.41 71.98 0.68 -4.87 16 2 C -0.14 -6.71 5.53 30.59 0.17 -6.54 16 3 C 0.23 11.17 2.13 44.17 0.09 11.26 16 4 H 0.02 0.99 6.94 -2.39 -0.02 0.98 16 5 C -0.50 -27.92 7.49 25.60 0.19 -27.72 16 6 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 7 C 0.02 1.02 5.30 84.66 0.45 1.47 16 8 N -0.92 -51.68 11.34 21.45 0.24 -51.43 16 9 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 13 N -0.68 -30.15 5.89 -477.17 -2.81 -32.97 16 14 C 0.07 2.29 2.85 44.17 0.13 2.41 16 15 H 0.07 2.34 7.18 -2.39 -0.02 2.32 16 16 C -0.12 -3.55 9.27 71.98 0.67 -2.89 16 17 C 0.52 16.85 7.06 87.66 0.62 17.47 16 18 O -0.55 -22.76 12.75 -3.04 -0.04 -22.80 16 19 N -0.65 -14.91 4.74 -303.60 -1.44 -16.35 16 20 C 0.12 2.81 6.38 38.11 0.24 3.06 16 21 C -0.09 -2.85 8.31 22.67 0.19 -2.66 16 22 C -0.14 -3.50 5.87 -20.11 -0.12 -3.62 16 23 C 0.53 13.85 8.27 70.33 0.58 14.43 16 24 O -0.56 -19.80 17.13 19.94 0.34 -19.46 16 25 O -0.50 -7.96 12.68 -56.19 -0.71 -8.67 16 26 C -0.07 -1.04 9.61 22.55 0.22 -0.82 16 27 C -0.11 -1.27 9.67 22.21 0.21 -1.05 16 28 C -0.07 -0.98 5.90 -19.68 -0.12 -1.10 16 29 C -0.12 -0.91 9.44 71.24 0.67 -0.24 16 30 H 0.04 1.60 6.27 -2.39 -0.01 1.59 16 31 H 0.04 2.12 7.20 -2.39 -0.02 2.10 16 32 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.07 3.80 6.13 -2.38 -0.01 3.78 16 34 H 0.03 1.16 7.45 -2.39 -0.02 1.14 16 35 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 36 H 0.34 15.69 5.17 -89.69 -0.46 15.23 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 1.88 7.27 -2.39 -0.02 1.86 16 39 H 0.10 1.74 7.68 -2.39 -0.02 1.72 16 40 H 0.43 6.37 7.13 -92.71 -0.66 5.71 16 41 H 0.12 4.79 5.32 -2.91 -0.02 4.78 16 42 H 0.43 3.19 9.11 -74.05 -0.67 2.51 16 43 H 0.16 1.69 7.61 -2.91 -0.02 1.67 16 44 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 45 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 46 H 0.10 0.37 8.08 -2.39 -0.02 0.35 16 47 H 0.07 0.57 7.04 -2.39 -0.02 0.55 16 Total: -1.00 -78.28 382.07 1.72 -76.55 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.76 Total: 29.86 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 4.88 Total: -1.39 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.01 Total: -100.75 kcal Atomic # 8 Polarization: -50.52 SS G_CDS: -0.41 Total: -50.92 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.28 1.72 -76.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030882.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.323 kcal (2) G-P(sol) polarization free energy of solvation -78.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds