Wall clock time and date at job start Tue Mar 31 2020 17:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 H 1.08998 * 109.47786 * 54.30416 * 3 2 1 5 5 C 1.50698 * 109.47110 * 174.30836 * 3 2 1 6 6 H 1.08005 * 120.00359 * 120.00199 * 5 3 2 7 7 C 1.37882 * 119.99922 * 299.99457 * 5 3 2 8 8 N 1.31507 * 119.99526 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47278 * 90.00103 * 9 7 5 11 11 H 1.48495 * 109.46890 * 210.00243 * 9 7 5 12 12 H 1.48499 * 109.47170 * 329.99928 * 9 7 5 13 13 N 1.46904 * 109.46946 * 294.30478 * 3 2 1 14 14 C 1.46905 * 111.00146 * 159.11706 * 13 3 2 15 15 H 1.09000 * 109.46843 * 38.38048 * 14 13 3 16 16 C 1.52998 * 109.47224 * 278.38356 * 14 13 3 17 17 C 1.50693 * 109.47035 * 158.37853 * 14 13 3 18 18 O 1.21288 * 120.00266 * 0.02562 * 17 14 13 19 19 N 1.34784 * 119.99591 * 180.02562 * 17 14 13 20 20 C 1.39963 * 119.99685 * 175.51223 * 19 17 14 21 21 C 1.38620 * 119.99949 * 33.71202 * 20 19 17 22 22 C 1.39512 * 119.77385 * 179.73449 * 21 20 19 23 23 C 1.47741 * 120.11695 * 180.27045 * 22 21 20 24 24 O 1.21476 * 120.00055 * 0.27144 * 23 22 21 25 25 O 1.34714 * 120.00091 * 180.26439 * 23 22 21 26 26 C 1.39668 * 119.76328 * 0.53846 * 22 21 20 27 27 C 1.37965 * 119.99224 * 359.73122 * 26 22 21 28 28 C 1.38258 * 120.22795 * 0.02562 * 27 26 22 29 29 C 1.50703 * 119.88285 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.46754 * 185.75154 * 1 2 3 31 31 H 1.08998 * 109.47249 * 305.74952 * 1 2 3 32 32 H 1.09001 * 109.47080 * 65.75224 * 1 2 3 33 33 H 1.08997 * 109.47556 * 239.99846 * 2 1 3 34 34 H 1.08999 * 109.47515 * 119.99471 * 2 1 3 35 35 H 0.97010 * 119.99473 * 179.97438 * 8 7 5 36 36 H 1.00897 * 111.00076 * 35.16697 * 13 3 2 37 37 H 1.09008 * 109.47440 * 55.04085 * 16 14 13 38 38 H 1.08994 * 109.47432 * 175.04921 * 16 14 13 39 39 H 1.09003 * 109.46546 * 295.04801 * 16 14 13 40 40 H 0.97001 * 120.00017 * 355.23554 * 19 17 14 41 41 H 1.08003 * 120.11137 * 359.97438 * 21 20 19 42 42 H 0.96696 * 116.99881 * 179.97438 * 25 23 22 43 43 H 1.08005 * 120.00167 * 179.71167 * 26 22 21 44 44 H 1.08002 * 119.88376 * 179.97438 * 27 26 22 45 45 H 1.09006 * 109.46911 * 270.01995 * 29 28 27 46 46 H 1.09002 * 109.47100 * 30.01737 * 29 28 27 47 47 H 1.08997 * 109.47477 * 150.02204 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 0.8345 5 6 3.5403 1.4449 0.1409 6 1 4.1545 1.8864 -0.6301 7 6 4.1291 0.8836 1.2542 8 7 3.3813 0.3457 2.1927 9 14 5.9889 0.8872 1.4292 10 1 6.4176 2.1230 2.1322 11 1 6.4146 -0.3007 2.2120 12 1 6.6129 0.8420 0.0824 13 7 1.6657 2.0942 -1.2623 14 6 1.6799 3.5566 -1.1242 15 1 2.5193 3.8541 -0.4958 16 6 0.3717 4.0209 -0.4809 17 6 1.8224 4.1883 -2.4850 18 8 1.9037 3.4890 -3.4727 19 7 1.8596 5.5303 -2.6044 20 6 2.0860 6.1155 -3.8555 21 6 1.6034 5.5061 -5.0032 22 6 1.8271 6.0964 -6.2474 23 6 1.3109 5.4566 -7.4750 24 8 0.6864 4.4173 -7.4017 25 8 1.5329 6.0259 -8.6756 26 6 2.5455 7.2914 -6.3287 27 6 3.0262 7.8866 -5.1807 28 6 2.8001 7.3040 -3.9474 29 6 3.3293 7.9605 -2.6984 30 1 -0.3633 -1.0225 0.1030 31 1 -0.3634 0.6004 0.8340 32 1 -0.3633 0.4220 -0.9370 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.7956 -0.0496 2.9758 36 1 0.7658 1.7701 -1.5836 37 1 0.2254 3.4972 0.4639 38 1 0.4176 5.0944 -0.2979 39 1 -0.4602 3.8017 -1.1503 40 1 1.7254 6.0905 -1.8240 41 1 1.0528 4.5796 -4.9342 42 1 1.1760 5.5701 -9.4501 43 1 2.7249 7.7493 -7.2903 44 1 3.5819 8.8105 -5.2457 45 1 4.3316 7.5871 -2.4884 46 1 3.3668 9.0402 -2.8435 47 1 2.6723 7.7292 -1.8600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:58 Heat of formation + Delta-G solvation = -101.883820 kcal Electronic energy + Delta-G solvation = -28969.641622 eV Core-core repulsion = 24924.195784 eV Total energy + Delta-G solvation = -4045.445837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.89069 -40.02315 -38.55270 -36.47186 -36.21397 -34.79020 -33.26254 -32.87312 -31.58301 -30.00072 -28.55897 -27.88444 -26.17878 -24.49860 -23.63555 -22.94860 -22.17807 -20.99631 -19.88997 -19.64021 -18.42131 -17.81606 -16.82413 -16.28724 -16.14043 -15.76216 -15.58830 -15.27824 -14.88856 -14.63023 -14.43617 -14.04837 -13.86542 -13.66845 -13.44826 -13.44092 -12.88284 -12.67169 -12.59273 -12.39995 -12.12822 -11.94861 -11.87067 -11.71363 -11.68338 -11.60398 -11.20029 -10.96524 -10.86332 -10.74558 -10.66053 -10.36068 -9.99074 -9.92846 -9.64954 -9.28223 -9.08369 -8.99755 -8.38941 -8.19983 -7.27584 -6.00425 -4.04804 0.51034 1.18502 2.35779 2.77593 2.92464 3.16009 3.29597 3.37328 3.43455 3.64291 4.42414 4.55813 4.58753 4.82926 4.91555 4.92650 5.12366 5.15305 5.28682 5.31612 5.37189 5.42543 5.44371 5.59150 5.71670 5.80991 5.89916 6.03672 6.13352 6.15211 6.18140 6.18406 6.21863 6.31568 6.32578 6.36841 6.43331 6.84078 6.85337 7.06059 7.13778 7.37182 7.51314 7.75708 7.75904 7.88295 8.19403 8.33553 8.43510 8.70288 9.03509 9.60601 11.04623 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.002995 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.661911 B = 9347.460004 C =10105.194030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.497 4.497 6 H 0.061 0.939 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.663 5.663 14 C 0.080 3.920 15 H 0.115 0.885 16 C -0.179 4.179 17 C 0.517 3.483 18 O -0.494 6.494 19 N -0.681 5.681 20 C 0.146 3.854 21 C -0.056 4.056 22 C -0.119 4.119 23 C 0.526 3.474 24 O -0.505 6.505 25 O -0.515 6.515 26 C -0.080 4.080 27 C -0.118 4.118 28 C -0.080 4.080 29 C -0.116 4.116 30 H 0.038 0.962 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.260 0.740 36 H 0.326 0.674 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.409 0.591 41 H 0.158 0.842 42 H 0.413 0.587 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.614 17.943 -11.696 21.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.536 4.536 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.722 3.278 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.295 5.295 14 C -0.035 4.035 15 H 0.133 0.867 16 C -0.239 4.239 17 C 0.304 3.696 18 O -0.365 6.365 19 N -0.329 5.329 20 C 0.051 3.949 21 C -0.077 4.077 22 C -0.120 4.120 23 C 0.370 3.630 24 O -0.394 6.394 25 O -0.327 6.327 26 C -0.099 4.099 27 C -0.136 4.136 28 C -0.083 4.083 29 C -0.173 4.173 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.145 0.855 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.246 0.754 41 H 0.176 0.824 42 H 0.271 0.729 43 H 0.154 0.846 44 H 0.151 0.849 45 H 0.098 0.902 46 H 0.092 0.908 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.903 17.094 -12.049 21.275 hybrid contribution -0.041 0.043 0.538 0.541 sum -3.944 17.137 -11.512 21.018 Atomic orbital electron populations 1.21885 0.99555 0.99830 0.99510 1.21732 0.91282 1.00023 1.03225 1.19209 0.95502 0.90202 0.83636 0.97741 1.21219 0.91251 1.36991 1.04143 0.92099 1.24935 0.98074 0.95489 0.95835 1.69869 1.34698 1.39310 1.09547 0.86565 0.85811 0.77365 0.78097 1.20888 1.21303 1.19875 1.60358 1.34320 1.00362 1.34417 1.21348 0.99023 0.92276 0.90854 0.86738 1.22513 0.97787 1.01275 1.02304 1.21484 0.74681 0.80459 0.92931 1.90681 1.45336 1.61353 1.39143 1.43808 1.72782 1.07900 1.08426 1.17425 0.97728 0.93727 0.86025 1.21486 0.96674 1.00172 0.89351 1.18836 1.05207 0.97564 0.90439 1.20885 0.76528 0.82055 0.83524 1.90933 1.38100 1.23037 1.87314 1.84539 1.74914 1.56067 1.17169 1.21340 0.95628 0.93709 0.99267 1.20801 1.01210 1.00701 0.90929 1.20028 0.96476 0.95334 0.96428 1.20799 1.01766 1.00536 0.94210 0.94335 0.93918 0.94524 0.93834 0.88156 0.93037 0.85545 0.90691 0.92606 0.92594 0.75366 0.82417 0.72875 0.84554 0.84868 0.90185 0.90836 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.62 37.16 0.36 -2.52 16 2 C -0.12 -2.90 5.39 -26.73 -0.14 -3.04 16 3 C 0.22 5.29 1.87 -68.86 -0.13 5.16 16 4 H 0.01 0.13 6.85 -51.93 -0.36 -0.23 16 5 C -0.50 -13.40 8.26 -34.44 -0.28 -13.68 16 6 H 0.06 1.71 7.81 -52.48 -0.41 1.30 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.10 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.66 -14.05 5.51 -102.17 -0.56 -14.62 16 14 C 0.08 1.39 2.84 -68.87 -0.20 1.20 16 15 H 0.11 2.12 7.50 -51.93 -0.39 1.73 16 16 C -0.18 -2.49 9.03 37.16 0.34 -2.16 16 17 C 0.52 8.82 7.07 -10.99 -0.08 8.74 16 18 O -0.49 -10.38 13.78 5.55 0.08 -10.30 16 19 N -0.68 -8.81 4.96 -9.89 -0.05 -8.86 16 20 C 0.15 1.92 6.30 -83.74 -0.53 1.39 16 21 C -0.06 -0.85 8.25 -38.97 -0.32 -1.17 16 22 C -0.12 -1.54 5.87 -105.00 -0.62 -2.16 16 23 C 0.53 6.88 8.27 34.61 0.29 7.17 16 24 O -0.51 -8.42 17.13 -19.25 -0.33 -8.75 16 25 O -0.51 -4.59 12.68 -40.53 -0.51 -5.10 16 26 C -0.08 -0.81 9.61 -39.15 -0.38 -1.19 16 27 C -0.12 -1.07 9.67 -39.67 -0.38 -1.45 16 28 C -0.08 -0.82 5.90 -104.35 -0.62 -1.44 16 29 C -0.12 -0.88 9.76 36.01 0.35 -0.53 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.04 0.64 6.66 -51.93 -0.35 0.30 16 33 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.33 6.57 6.44 -39.29 -0.25 6.32 16 37 H 0.07 1.14 7.08 -51.92 -0.37 0.77 16 38 H 0.05 0.59 7.61 -51.93 -0.40 0.20 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.41 3.95 6.56 -40.82 -0.27 3.68 16 41 H 0.16 2.83 5.71 -52.48 -0.30 2.53 16 42 H 0.41 1.84 9.11 45.56 0.42 2.25 16 43 H 0.14 1.08 7.61 -52.48 -0.40 0.68 16 44 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 47 H 0.07 0.44 6.48 -51.93 -0.34 0.10 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -33.84 385.75 -8.20 -42.04 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -5.80 Total: 11.92 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.44 Total: -4.23 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.01 Total: -47.58 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.77 Total: -24.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.84 -8.20 -42.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.841 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds