Wall clock time and date at job start Tue Mar 31 2020 17:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46875 * 2 1 4 4 H 1.08998 * 109.47786 * 54.30416 * 3 2 1 5 5 C 1.50698 * 109.47110 * 174.30836 * 3 2 1 6 6 H 1.08005 * 120.00359 * 120.00199 * 5 3 2 7 7 C 1.37882 * 119.99922 * 299.99457 * 5 3 2 8 8 N 1.31507 * 119.99526 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99941 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47278 * 90.00103 * 9 7 5 11 11 H 1.48495 * 109.46890 * 210.00243 * 9 7 5 12 12 H 1.48499 * 109.47170 * 329.99928 * 9 7 5 13 13 N 1.46904 * 109.46946 * 294.30478 * 3 2 1 14 14 C 1.46905 * 111.00146 * 159.11706 * 13 3 2 15 15 H 1.09000 * 109.46843 * 38.38048 * 14 13 3 16 16 C 1.52998 * 109.47224 * 278.38356 * 14 13 3 17 17 C 1.50693 * 109.47035 * 158.37853 * 14 13 3 18 18 O 1.21288 * 120.00266 * 0.02562 * 17 14 13 19 19 N 1.34784 * 119.99591 * 180.02562 * 17 14 13 20 20 C 1.39963 * 119.99685 * 175.51223 * 19 17 14 21 21 C 1.38620 * 119.99949 * 33.71202 * 20 19 17 22 22 C 1.39512 * 119.77385 * 179.73449 * 21 20 19 23 23 C 1.47741 * 120.11695 * 180.27045 * 22 21 20 24 24 O 1.21476 * 120.00055 * 0.27144 * 23 22 21 25 25 O 1.34714 * 120.00091 * 180.26439 * 23 22 21 26 26 C 1.39668 * 119.76328 * 0.53846 * 22 21 20 27 27 C 1.37965 * 119.99224 * 359.73122 * 26 22 21 28 28 C 1.38258 * 120.22795 * 0.02562 * 27 26 22 29 29 C 1.50703 * 119.88285 * 179.97438 * 28 27 26 30 30 H 1.08998 * 109.46754 * 185.75154 * 1 2 3 31 31 H 1.08998 * 109.47249 * 305.74952 * 1 2 3 32 32 H 1.09001 * 109.47080 * 65.75224 * 1 2 3 33 33 H 1.08997 * 109.47556 * 239.99846 * 2 1 3 34 34 H 1.08999 * 109.47515 * 119.99471 * 2 1 3 35 35 H 0.97010 * 119.99473 * 179.97438 * 8 7 5 36 36 H 1.00897 * 111.00076 * 35.16697 * 13 3 2 37 37 H 1.09008 * 109.47440 * 55.04085 * 16 14 13 38 38 H 1.08994 * 109.47432 * 175.04921 * 16 14 13 39 39 H 1.09003 * 109.46546 * 295.04801 * 16 14 13 40 40 H 0.97001 * 120.00017 * 355.23554 * 19 17 14 41 41 H 1.08003 * 120.11137 * 359.97438 * 21 20 19 42 42 H 0.96696 * 116.99881 * 179.97438 * 25 23 22 43 43 H 1.08005 * 120.00167 * 179.71167 * 26 22 21 44 44 H 1.08002 * 119.88376 * 179.97438 * 27 26 22 45 45 H 1.09006 * 109.46911 * 270.01995 * 29 28 27 46 46 H 1.09002 * 109.47100 * 30.01737 * 29 28 27 47 47 H 1.08997 * 109.47477 * 150.02204 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5958 1.9850 0.8345 5 6 3.5403 1.4449 0.1409 6 1 4.1545 1.8864 -0.6301 7 6 4.1291 0.8836 1.2542 8 7 3.3813 0.3457 2.1927 9 14 5.9889 0.8872 1.4292 10 1 6.4176 2.1230 2.1322 11 1 6.4146 -0.3007 2.2120 12 1 6.6129 0.8420 0.0824 13 7 1.6657 2.0942 -1.2623 14 6 1.6799 3.5566 -1.1242 15 1 2.5193 3.8541 -0.4958 16 6 0.3717 4.0209 -0.4809 17 6 1.8224 4.1883 -2.4850 18 8 1.9037 3.4890 -3.4727 19 7 1.8596 5.5303 -2.6044 20 6 2.0860 6.1155 -3.8555 21 6 1.6034 5.5061 -5.0032 22 6 1.8271 6.0964 -6.2474 23 6 1.3109 5.4566 -7.4750 24 8 0.6864 4.4173 -7.4017 25 8 1.5329 6.0259 -8.6756 26 6 2.5455 7.2914 -6.3287 27 6 3.0262 7.8866 -5.1807 28 6 2.8001 7.3040 -3.9474 29 6 3.3293 7.9605 -2.6984 30 1 -0.3633 -1.0225 0.1030 31 1 -0.3634 0.6004 0.8340 32 1 -0.3633 0.4220 -0.9370 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 3.7956 -0.0496 2.9758 36 1 0.7658 1.7701 -1.5836 37 1 0.2254 3.4972 0.4639 38 1 0.4176 5.0944 -0.2979 39 1 -0.4602 3.8017 -1.1503 40 1 1.7254 6.0905 -1.8240 41 1 1.0528 4.5796 -4.9342 42 1 1.1760 5.5701 -9.4501 43 1 2.7249 7.7493 -7.2903 44 1 3.5819 8.8105 -5.2457 45 1 4.3316 7.5871 -2.4884 46 1 3.3668 9.0402 -2.8435 47 1 2.6723 7.7292 -1.8600 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030884.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:57 Heat of formation + Delta-G solvation = -125.922371 kcal Electronic energy + Delta-G solvation = -28970.684011 eV Core-core repulsion = 24924.195784 eV Total energy + Delta-G solvation = -4046.488227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94370 -41.11296 -39.65523 -38.12236 -37.14185 -35.94210 -34.98337 -33.74659 -33.41574 -31.12449 -29.96546 -28.70601 -28.03311 -25.77752 -24.78063 -24.34000 -23.35492 -21.92690 -21.48918 -21.12756 -19.41195 -18.81632 -18.31260 -18.05002 -17.28755 -16.87626 -16.73517 -16.48614 -16.26228 -15.96935 -15.81949 -15.44072 -15.04576 -14.71728 -14.56377 -14.40481 -14.38278 -14.25882 -13.57292 -13.57037 -13.30755 -13.16493 -13.09760 -13.00446 -12.76433 -12.73119 -12.62554 -12.57204 -12.45946 -12.29196 -11.98784 -11.79382 -11.71472 -11.50912 -11.43904 -11.00815 -10.66366 -10.43458 -9.89344 -9.19986 -8.97561 -8.06988 -6.18558 -0.40270 0.25619 1.37882 1.39382 1.42850 1.52829 1.65920 1.84831 2.11340 2.44008 2.72863 3.18189 3.59097 3.70072 3.78461 3.86007 4.05195 4.13135 4.14473 4.27305 4.30711 4.49277 4.51189 4.57459 4.69110 4.72057 4.72819 4.81652 4.85907 4.87301 5.06071 5.17156 5.19761 5.22415 5.25667 5.26533 5.35965 5.37241 5.43600 5.53331 5.58873 5.74500 5.86783 5.89271 6.28103 6.37223 6.53506 6.91792 6.92050 6.94589 7.18131 7.50319 8.95703 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.002995 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.661911 B = 9347.460004 C =10105.194030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.232 3.768 4 H -0.010 1.010 5 C -0.515 4.515 6 H 0.041 0.959 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.679 5.679 14 C 0.078 3.922 15 H 0.103 0.897 16 C -0.168 4.168 17 C 0.520 3.480 18 O -0.542 6.542 19 N -0.661 5.661 20 C 0.120 3.880 21 C -0.084 4.084 22 C -0.141 4.141 23 C 0.530 3.470 24 O -0.555 6.555 25 O -0.497 6.497 26 C -0.065 4.065 27 C -0.109 4.109 28 C -0.068 4.068 29 C -0.119 4.119 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.261 0.739 36 H 0.330 0.670 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.425 0.575 41 H 0.117 0.883 42 H 0.433 0.567 43 H 0.165 0.835 44 H 0.177 0.823 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 21.459 -12.015 24.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.124 3.876 4 H 0.008 0.992 5 C -0.554 4.554 6 H 0.060 0.940 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.206 1.206 13 N -0.311 5.311 14 C -0.036 4.036 15 H 0.120 0.880 16 C -0.227 4.227 17 C 0.308 3.692 18 O -0.417 6.417 19 N -0.310 5.310 20 C 0.026 3.974 21 C -0.105 4.105 22 C -0.143 4.143 23 C 0.376 3.624 24 O -0.448 6.448 25 O -0.310 6.310 26 C -0.083 4.083 27 C -0.127 4.127 28 C -0.071 4.071 29 C -0.175 4.175 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.266 0.734 41 H 0.135 0.865 42 H 0.295 0.705 43 H 0.183 0.817 44 H 0.194 0.806 45 H 0.098 0.902 46 H 0.122 0.878 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.147 20.688 -12.381 24.314 hybrid contribution -0.238 -0.922 0.524 1.087 sum -3.385 19.766 -11.856 23.297 Atomic orbital electron populations 1.21738 0.96190 1.01162 1.00467 1.21586 0.94331 0.99199 1.00894 1.18934 0.93852 0.90542 0.84241 0.99207 1.21412 0.92881 1.37228 1.03858 0.94042 1.25570 1.01868 0.95168 0.95579 1.69974 1.36048 1.39559 1.09779 0.85679 0.81209 0.77840 0.77605 1.19576 1.20836 1.20613 1.60189 1.34870 1.02878 1.33138 1.21360 1.00543 0.90275 0.91391 0.87966 1.22394 0.95615 1.03527 1.01193 1.21322 0.74289 0.81688 0.91932 1.90678 1.47874 1.62826 1.40337 1.43447 1.71558 1.06547 1.09415 1.17603 0.99542 0.95156 0.85108 1.21275 0.98188 0.99639 0.91377 1.18964 1.06685 0.99042 0.89616 1.21028 0.75452 0.81262 0.84629 1.90912 1.40526 1.25256 1.88087 1.84480 1.74306 1.55484 1.16761 1.21697 0.93499 0.91978 1.01136 1.21323 1.00106 1.01584 0.89698 1.20409 0.94577 0.93630 0.98451 1.20935 1.01538 1.02131 0.92937 0.92686 0.93516 0.93050 0.95523 0.90942 0.92939 0.85126 0.91902 0.88727 0.92043 0.73416 0.86499 0.70517 0.81750 0.80594 0.90237 0.87825 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 9.62 71.98 0.69 -4.59 16 2 C -0.12 -5.85 5.39 30.60 0.16 -5.69 16 3 C 0.23 11.46 1.87 44.17 0.08 11.54 16 4 H -0.01 -0.49 6.85 -2.39 -0.02 -0.51 16 5 C -0.52 -28.65 8.26 25.60 0.21 -28.44 16 6 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -51.34 11.29 21.45 0.24 -51.10 16 9 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 10 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 13 N -0.68 -29.89 5.51 -477.16 -2.63 -32.52 16 14 C 0.08 2.80 2.84 44.17 0.13 2.93 16 15 H 0.10 3.89 7.50 -2.39 -0.02 3.87 16 16 C -0.17 -4.56 9.03 71.98 0.65 -3.91 16 17 C 0.52 18.34 7.07 87.65 0.62 18.96 16 18 O -0.54 -24.25 13.78 -3.05 -0.04 -24.29 16 19 N -0.66 -16.92 4.96 -303.60 -1.51 -18.43 16 20 C 0.12 3.11 6.30 38.11 0.24 3.35 16 21 C -0.08 -2.64 8.25 22.67 0.19 -2.45 16 22 C -0.14 -3.66 5.87 -20.11 -0.12 -3.77 16 23 C 0.53 14.08 8.27 70.33 0.58 14.67 16 24 O -0.56 -19.71 17.13 19.91 0.34 -19.37 16 25 O -0.50 -8.11 12.68 -56.23 -0.71 -8.82 16 26 C -0.06 -1.11 9.61 22.55 0.22 -0.89 16 27 C -0.11 -1.52 9.67 22.21 0.21 -1.30 16 28 C -0.07 -1.21 5.90 -19.69 -0.12 -1.32 16 29 C -0.12 -1.33 9.76 71.24 0.70 -0.63 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.80 6.66 -2.39 -0.02 1.78 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.07 3.90 5.94 -2.39 -0.01 3.89 16 35 H 0.26 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.33 13.75 6.44 -89.70 -0.58 13.17 16 37 H 0.06 1.89 7.08 -2.38 -0.02 1.87 16 38 H 0.09 1.80 7.61 -2.39 -0.02 1.78 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.43 7.54 6.56 -92.71 -0.61 6.93 16 41 H 0.12 4.64 5.71 -2.91 -0.02 4.62 16 42 H 0.43 3.23 9.11 -74.06 -0.67 2.55 16 43 H 0.16 1.88 7.61 -2.91 -0.02 1.86 16 44 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 45 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 46 H 0.10 0.58 8.08 -2.39 -0.02 0.57 16 47 H 0.07 0.72 6.48 -2.39 -0.02 0.71 16 Total: -1.00 -79.15 385.75 1.79 -77.36 By element: Atomic # 1 Polarization: 32.12 SS G_CDS: -0.83 Total: 31.29 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 4.90 Total: -0.17 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -3.89 Total: -102.04 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.41 Total: -52.49 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.15 1.79 -77.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030884.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.558 kcal (2) G-P(sol) polarization free energy of solvation -79.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds