Wall clock time and date at job start Tue Mar 31 2020 18:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 N 1.46506 * 109.46972 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99945 * 270.00094 * 4 3 2 6 6 C 1.39052 * 119.99724 * 90.00611 * 4 3 2 7 7 C 1.39229 * 119.92819 * 359.72423 * 6 4 3 8 8 C 1.37593 * 120.07657 * 179.76641 * 7 6 4 9 9 C 1.39858 * 119.92135 * 0.52892 * 8 7 6 10 10 C 1.47418 * 120.07021 * 179.70038 * 9 8 7 11 11 O 1.21632 * 119.99765 * 151.15837 * 10 9 8 12 12 N 1.34775 * 120.00097 * 331.15610 * 10 9 8 13 13 C 1.36910 * 119.99859 * 186.92005 * 12 10 9 14 14 H 1.07998 * 120.00021 * 217.05328 * 13 12 10 15 15 C 1.39021 * 120.00018 * 37.04977 * 13 12 10 16 16 N 1.31387 * 119.99888 * 25.98326 * 15 13 12 17 17 Si 1.86795 * 120.00281 * 205.98057 * 15 13 12 18 18 H 1.48497 * 109.47397 * 90.00021 * 17 15 13 19 19 H 1.48497 * 109.47258 * 210.00546 * 17 15 13 20 20 H 1.48507 * 109.46932 * 329.99948 * 17 15 13 21 21 C 1.46498 * 120.00287 * 6.92226 * 12 10 9 22 22 C 1.52994 * 109.46888 * 99.61296 * 21 12 10 23 23 C 1.50705 * 109.46761 * 179.97438 * 22 21 12 24 24 O 1.20825 * 120.00172 * 0.02562 * 23 22 21 25 25 O 1.34235 * 119.99633 * 180.02562 * 23 22 21 26 26 C 1.39860 * 119.85537 * 359.72198 * 9 8 7 27 27 C 1.37595 * 119.92044 * 359.97438 * 26 9 8 28 28 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47480 * 299.99565 * 1 2 3 30 30 H 1.08999 * 109.47459 * 59.99909 * 1 2 3 31 31 H 1.09006 * 109.46950 * 240.00491 * 2 1 3 32 32 H 1.09000 * 109.47236 * 120.00593 * 2 1 3 33 33 H 1.09000 * 109.47574 * 300.00386 * 3 2 1 34 34 H 1.09006 * 109.46832 * 60.00419 * 3 2 1 35 35 H 1.09000 * 109.46787 * 90.00520 * 5 4 3 36 36 H 1.09008 * 109.47459 * 210.00135 * 5 4 3 37 37 H 1.09004 * 109.47815 * 330.00153 * 5 4 3 38 38 H 1.08008 * 119.96245 * 359.97438 * 7 6 4 39 39 H 1.07999 * 120.03704 * 180.25460 * 8 7 6 40 40 H 0.96997 * 120.00415 * 184.98426 * 16 15 13 41 41 H 1.08991 * 109.47236 * 219.61839 * 21 12 10 42 42 H 1.08998 * 109.46603 * 339.61768 * 21 12 10 43 43 H 1.08995 * 109.47875 * 299.99853 * 22 21 12 44 44 H 1.08998 * 109.47113 * 60.00784 * 22 21 12 45 45 H 0.96702 * 116.99543 * 180.02562 * 25 23 22 46 46 H 1.07997 * 120.03969 * 179.97438 * 26 9 8 47 47 H 1.07993 * 119.96144 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.2380 1.4422 1.2678 6 6 4.1996 1.4427 -1.2052 7 6 3.5014 1.4373 -2.4097 8 6 4.1857 1.4424 -3.6034 9 6 5.5843 1.4419 -3.6058 10 6 6.3208 1.4408 -4.8828 11 8 7.4241 1.9485 -4.9490 12 7 5.7716 0.8770 -5.9769 13 6 6.5083 0.7488 -7.1238 14 1 6.0373 0.8844 -8.0862 15 6 7.8626 0.4440 -7.0496 16 7 8.3338 -0.2052 -6.0090 17 14 9.0125 0.9572 -8.4293 18 1 9.5554 2.3096 -8.1440 19 1 10.1311 -0.0144 -8.5286 20 1 8.2651 0.9843 -9.7123 21 6 4.3864 0.4016 -5.9391 22 6 3.4721 1.4428 -6.5876 23 6 2.0472 0.9534 -6.5493 24 8 1.7895 -0.1180 -6.0536 25 8 1.0643 1.7078 -7.0658 26 6 6.2826 1.4422 -2.3940 27 6 5.5920 1.4433 -1.2039 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 4.4198 0.4145 1.5821 36 1 5.1904 1.9561 1.1372 37 1 3.6493 1.9559 2.0279 38 1 2.4214 1.4324 -2.4071 39 1 3.6435 1.4423 -4.5374 40 1 9.2882 -0.3546 -5.9219 41 1 4.3101 -0.5390 -6.4844 42 1 4.0837 0.2469 -4.9035 43 1 3.5483 2.3834 -6.0423 44 1 3.7748 1.5975 -7.6232 45 1 0.1664 1.3520 -7.0176 46 1 7.3626 1.4414 -2.3924 47 1 6.1306 1.4431 -0.2679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595840008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:47 Heat of formation + Delta-G solvation = -51.322054 kcal Electronic energy + Delta-G solvation = -29704.354459 eV Core-core repulsion = 25661.101145 eV Total energy + Delta-G solvation = -4043.253314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31604 -39.59475 -38.29460 -36.13546 -36.06858 -34.73482 -33.50363 -32.32577 -30.63171 -30.13716 -29.53751 -27.53195 -25.59890 -24.81669 -23.75856 -22.28943 -21.71573 -20.96810 -20.45076 -19.49472 -17.97863 -17.43399 -16.79018 -16.51961 -15.98804 -15.77818 -15.37763 -14.96193 -14.74627 -14.67916 -14.26112 -14.00689 -13.72509 -13.50060 -13.28390 -13.09574 -12.89265 -12.75708 -12.59862 -12.18330 -12.14884 -12.02211 -11.73113 -11.55825 -11.51452 -11.39495 -11.37277 -11.16253 -10.84956 -10.82372 -10.63186 -10.52517 -10.37959 -10.21858 -9.98926 -9.32467 -8.78989 -8.41239 -8.11415 -7.21199 -6.97347 -6.14962 -3.80746 1.80344 1.91911 2.37935 3.17423 3.18339 3.36229 3.43211 3.47298 4.02317 4.32867 4.70888 4.74444 4.82759 4.95192 5.05826 5.14177 5.17375 5.18348 5.28027 5.33202 5.37679 5.41622 5.45916 5.48830 5.58754 5.63717 5.67586 5.81712 5.83582 5.89089 5.95026 5.98823 6.02692 6.12460 6.15868 6.30659 6.49085 6.55634 6.60744 6.74019 6.84863 7.15467 7.19940 7.40609 7.60714 7.73292 8.03245 8.22384 9.02319 9.19170 9.63459 10.29477 10.93462 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.004082 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.130356 B = 6858.112924 C = 8907.423045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.125 3.875 4 N -0.634 5.634 5 C 0.095 3.905 6 C 0.214 3.786 7 C -0.205 4.205 8 C -0.085 4.085 9 C -0.151 4.151 10 C 0.517 3.483 11 O -0.541 6.541 12 N -0.442 5.442 13 C -0.354 4.354 14 H 0.083 0.917 15 C 0.078 3.922 16 N -0.822 5.822 17 Si 0.905 3.095 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.082 3.918 22 C -0.138 4.138 23 C 0.481 3.519 24 O -0.514 6.514 25 O -0.521 6.521 26 C -0.024 4.024 27 C -0.206 4.206 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.266 0.734 41 H 0.074 0.926 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.116 0.884 45 H 0.404 0.596 46 H 0.128 0.872 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 2.872 10.836 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.002 3.998 4 N -0.345 5.345 5 C -0.048 4.048 6 C 0.113 3.887 7 C -0.227 4.227 8 C -0.104 4.104 9 C -0.156 4.156 10 C 0.306 3.694 11 O -0.420 6.420 12 N -0.163 5.163 13 C -0.480 4.480 14 H 0.100 0.900 15 C -0.134 4.134 16 N -0.455 5.455 17 Si 0.732 3.268 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.198 1.198 21 C -0.042 4.042 22 C -0.176 4.176 23 C 0.323 3.677 24 O -0.402 6.402 25 O -0.332 6.332 26 C -0.043 4.043 27 C -0.228 4.228 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.134 0.866 45 H 0.262 0.738 46 H 0.146 0.854 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.486 2.846 11.122 18.484 hybrid contribution -0.075 -0.200 -0.505 0.548 sum -14.562 2.645 10.618 18.215 Atomic orbital electron populations 1.21699 0.95450 1.01895 1.01677 1.21999 0.95752 0.97904 1.02861 1.21457 0.79655 0.96363 1.02355 1.46224 1.04421 1.80725 1.03166 1.21589 0.97276 1.00901 0.85067 1.17850 0.91149 0.94251 0.85417 1.20526 0.99017 1.12107 0.91048 1.22052 0.94066 0.95930 0.98359 1.20216 0.93192 1.06936 0.95292 1.17667 0.86751 0.81717 0.83227 1.90588 1.20650 1.46652 1.84159 1.43146 1.08883 1.52324 1.11924 1.18984 0.92407 1.51598 0.85009 0.89955 1.25073 0.98385 0.92822 0.97072 1.69939 1.14126 1.31059 1.30363 0.86323 0.80228 0.78931 0.81322 1.20219 1.21469 1.19849 1.22201 0.84414 0.95216 1.02409 1.22034 0.86402 1.02718 1.06486 1.23751 0.88425 0.82180 0.73355 1.90718 1.84351 1.22731 1.42419 1.84595 1.20511 1.52338 1.75770 1.20967 1.00059 0.92869 0.90426 1.20553 0.91800 1.12122 0.98302 0.92553 0.92885 0.92552 0.91237 0.92046 0.90669 0.91295 0.93748 0.91250 0.92035 0.86485 0.83560 0.92396 0.90788 0.87955 0.87570 0.86624 0.73827 0.85449 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.15 0.37 -0.79 16 2 C -0.15 -1.40 6.26 -26.74 -0.17 -1.56 16 3 C 0.13 1.22 5.18 -4.04 -0.02 1.20 16 4 N -0.63 -7.61 2.99 -179.61 -0.54 -8.15 16 5 C 0.09 0.90 10.22 59.85 0.61 1.51 16 6 C 0.21 3.27 6.55 -83.85 -0.55 2.72 16 7 C -0.20 -3.25 9.18 -39.45 -0.36 -3.61 16 8 C -0.09 -1.56 7.51 -39.21 -0.29 -1.85 16 9 C -0.15 -3.28 5.63 -104.95 -0.59 -3.87 16 10 C 0.52 13.51 6.65 -12.52 -0.08 13.43 16 11 O -0.54 -16.21 14.46 5.25 0.08 -16.14 16 12 N -0.44 -11.08 2.57 -116.04 -0.30 -11.38 16 13 C -0.35 -9.62 9.19 -14.99 -0.14 -9.76 16 14 H 0.08 2.10 7.95 -52.49 -0.42 1.68 16 15 C 0.08 2.20 4.12 -17.45 -0.07 2.13 16 16 N -0.82 -24.47 11.89 55.50 0.66 -23.81 16 17 Si 0.91 21.90 29.63 -169.99 -5.04 16.86 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.08 1.65 4.13 -4.05 -0.02 1.64 16 22 C -0.14 -2.21 5.13 -27.88 -0.14 -2.36 16 23 C 0.48 6.94 8.11 36.01 0.29 7.23 16 24 O -0.51 -8.69 16.74 -18.75 -0.31 -9.01 16 25 O -0.52 -5.81 13.42 -39.27 -0.53 -6.34 16 26 C -0.02 -0.47 9.58 -39.21 -0.38 -0.85 16 27 C -0.21 -3.38 9.18 -39.44 -0.36 -3.74 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.75 6.18 -51.93 -0.32 0.43 16 34 H 0.07 0.55 7.90 -51.93 -0.41 0.14 16 35 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.66 6.17 -51.92 -0.32 0.34 16 37 H 0.06 0.46 7.89 -51.93 -0.41 0.05 16 38 H 0.12 1.60 6.12 -52.48 -0.32 1.28 16 39 H 0.15 2.53 2.46 -52.49 -0.13 2.40 16 40 H 0.27 7.60 8.32 -40.82 -0.34 7.26 16 41 H 0.07 1.55 8.07 -51.93 -0.42 1.14 16 42 H 0.10 2.03 3.76 -55.86 -0.21 1.82 16 43 H 0.11 1.62 7.24 -51.93 -0.38 1.25 16 44 H 0.12 1.83 8.14 -51.93 -0.42 1.41 16 45 H 0.40 2.63 9.10 45.56 0.41 3.05 16 46 H 0.13 2.67 7.90 -52.49 -0.41 2.25 16 47 H 0.12 1.65 6.11 -52.49 -0.32 1.33 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -35.40 381.72 -7.88 -43.27 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.75 Total: 7.45 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.90 Total: 1.48 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.18 Total: -43.34 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.77 Total: -31.48 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.04 Total: 16.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.40 -7.88 -43.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595840008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.048 kcal (2) G-P(sol) polarization free energy of solvation -35.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds