Wall clock time and date at job start Tue Mar 31 2020 18:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47072 * 2 1 4 4 N 1.46506 * 109.46972 * 180.02562 * 3 2 1 5 5 C 1.46497 * 119.99945 * 270.00094 * 4 3 2 6 6 C 1.39052 * 119.99724 * 90.00611 * 4 3 2 7 7 C 1.39229 * 119.92819 * 359.72423 * 6 4 3 8 8 C 1.37593 * 120.07657 * 179.76641 * 7 6 4 9 9 C 1.39858 * 119.92135 * 0.52892 * 8 7 6 10 10 C 1.47418 * 120.07021 * 179.70038 * 9 8 7 11 11 O 1.21632 * 119.99765 * 151.15837 * 10 9 8 12 12 N 1.34775 * 120.00097 * 331.15610 * 10 9 8 13 13 C 1.36910 * 119.99859 * 186.92005 * 12 10 9 14 14 H 1.07998 * 120.00021 * 217.05328 * 13 12 10 15 15 C 1.39021 * 120.00018 * 37.04977 * 13 12 10 16 16 N 1.31387 * 119.99888 * 25.98326 * 15 13 12 17 17 Si 1.86795 * 120.00281 * 205.98057 * 15 13 12 18 18 H 1.48497 * 109.47397 * 90.00021 * 17 15 13 19 19 H 1.48497 * 109.47258 * 210.00546 * 17 15 13 20 20 H 1.48507 * 109.46932 * 329.99948 * 17 15 13 21 21 C 1.46498 * 120.00287 * 6.92226 * 12 10 9 22 22 C 1.52994 * 109.46888 * 99.61296 * 21 12 10 23 23 C 1.50705 * 109.46761 * 179.97438 * 22 21 12 24 24 O 1.20825 * 120.00172 * 0.02562 * 23 22 21 25 25 O 1.34235 * 119.99633 * 180.02562 * 23 22 21 26 26 C 1.39860 * 119.85537 * 359.72198 * 9 8 7 27 27 C 1.37595 * 119.92044 * 359.97438 * 26 9 8 28 28 H 1.09004 * 109.47266 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47480 * 299.99565 * 1 2 3 30 30 H 1.08999 * 109.47459 * 59.99909 * 1 2 3 31 31 H 1.09006 * 109.46950 * 240.00491 * 2 1 3 32 32 H 1.09000 * 109.47236 * 120.00593 * 2 1 3 33 33 H 1.09000 * 109.47574 * 300.00386 * 3 2 1 34 34 H 1.09006 * 109.46832 * 60.00419 * 3 2 1 35 35 H 1.09000 * 109.46787 * 90.00520 * 5 4 3 36 36 H 1.09008 * 109.47459 * 210.00135 * 5 4 3 37 37 H 1.09004 * 109.47815 * 330.00153 * 5 4 3 38 38 H 1.08008 * 119.96245 * 359.97438 * 7 6 4 39 39 H 1.07999 * 120.03704 * 180.25460 * 8 7 6 40 40 H 0.96997 * 120.00415 * 184.98426 * 16 15 13 41 41 H 1.08991 * 109.47236 * 219.61839 * 21 12 10 42 42 H 1.08998 * 109.46603 * 339.61768 * 21 12 10 43 43 H 1.08995 * 109.47875 * 299.99853 * 22 21 12 44 44 H 1.08998 * 109.47113 * 60.00784 * 22 21 12 45 45 H 0.96702 * 116.99543 * 180.02562 * 25 23 22 46 46 H 1.07997 * 120.03969 * 179.97438 * 26 9 8 47 47 H 1.07993 * 119.96144 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4424 -0.0006 5 6 4.2380 1.4422 1.2678 6 6 4.1996 1.4427 -1.2052 7 6 3.5014 1.4373 -2.4097 8 6 4.1857 1.4424 -3.6034 9 6 5.5843 1.4419 -3.6058 10 6 6.3208 1.4408 -4.8828 11 8 7.4241 1.9485 -4.9490 12 7 5.7716 0.8770 -5.9769 13 6 6.5083 0.7488 -7.1238 14 1 6.0373 0.8844 -8.0862 15 6 7.8626 0.4440 -7.0496 16 7 8.3338 -0.2052 -6.0090 17 14 9.0125 0.9572 -8.4293 18 1 9.5554 2.3096 -8.1440 19 1 10.1311 -0.0144 -8.5286 20 1 8.2651 0.9843 -9.7123 21 6 4.3864 0.4016 -5.9391 22 6 3.4721 1.4428 -6.5876 23 6 2.0472 0.9534 -6.5493 24 8 1.7895 -0.1180 -6.0536 25 8 1.0643 1.7078 -7.0658 26 6 6.2826 1.4422 -2.3940 27 6 5.5920 1.4433 -1.2039 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 4.4198 0.4145 1.5821 36 1 5.1904 1.9561 1.1372 37 1 3.6493 1.9559 2.0279 38 1 2.4214 1.4324 -2.4071 39 1 3.6435 1.4423 -4.5374 40 1 9.2882 -0.3546 -5.9219 41 1 4.3101 -0.5390 -6.4844 42 1 4.0837 0.2469 -4.9035 43 1 3.5483 2.3834 -6.0423 44 1 3.7748 1.5975 -7.6232 45 1 0.1664 1.3520 -7.0176 46 1 7.3626 1.4414 -2.3924 47 1 6.1306 1.4431 -0.2679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595840008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:46 Heat of formation + Delta-G solvation = -74.195112 kcal Electronic energy + Delta-G solvation = -29705.346309 eV Core-core repulsion = 25661.101145 eV Total energy + Delta-G solvation = -4044.245165 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.65983 -40.88188 -39.79430 -37.39823 -37.21550 -36.50512 -34.61664 -34.01248 -32.12910 -31.66759 -30.90474 -28.35591 -27.28964 -26.19355 -25.19887 -23.55227 -22.88007 -22.17163 -21.71297 -21.11536 -19.13081 -18.96907 -18.23689 -17.91504 -17.30456 -16.94686 -16.83533 -16.56799 -16.05062 -15.72421 -15.64348 -15.35635 -15.32905 -14.86829 -14.70500 -14.33770 -14.10194 -13.90868 -13.78846 -13.50183 -13.42522 -13.19128 -13.00322 -12.87894 -12.79543 -12.73285 -12.66477 -12.52413 -12.41788 -12.18601 -12.09770 -11.91200 -11.64523 -11.59398 -11.38762 -10.83937 -10.63434 -10.11141 -9.81376 -9.25517 -8.27383 -8.15222 -5.93609 0.35171 0.52061 1.22423 1.39737 1.49502 1.53110 2.04657 2.20692 2.29535 2.50386 2.97837 3.28197 3.36349 3.81406 3.90972 3.93072 4.00536 4.07455 4.13850 4.16957 4.31730 4.42296 4.49050 4.51837 4.54348 4.62962 4.63834 4.70848 4.75999 4.79119 4.80894 4.93439 4.98338 5.08438 5.12718 5.22619 5.25800 5.29272 5.40017 5.46654 5.49819 5.63989 5.70204 5.82537 6.16498 6.38748 6.54109 6.98367 7.05283 7.20976 7.62518 8.32222 8.83680 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011143 B = 0.004082 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.130356 B = 6858.112924 C = 8907.423045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.118 3.882 4 N -0.627 5.627 5 C 0.085 3.915 6 C 0.231 3.769 7 C -0.203 4.203 8 C -0.078 4.078 9 C -0.193 4.193 10 C 0.508 3.492 11 O -0.597 6.597 12 N -0.456 5.456 13 C -0.368 4.368 14 H 0.095 0.905 15 C 0.025 3.975 16 N -0.866 5.866 17 Si 0.967 3.033 18 H -0.291 1.291 19 H -0.285 1.285 20 H -0.248 1.248 21 C 0.085 3.915 22 C -0.131 4.131 23 C 0.498 3.502 24 O -0.540 6.540 25 O -0.507 6.507 26 C -0.039 4.039 27 C -0.204 4.204 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.146 0.854 39 H 0.155 0.845 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.429 0.571 46 H 0.102 0.898 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.054 3.675 12.271 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C -0.004 4.004 4 N -0.336 5.336 5 C -0.057 4.057 6 C 0.126 3.874 7 C -0.225 4.225 8 C -0.097 4.097 9 C -0.199 4.199 10 C 0.300 3.700 11 O -0.480 6.480 12 N -0.176 5.176 13 C -0.494 4.494 14 H 0.112 0.888 15 C -0.182 4.182 16 N -0.501 5.501 17 Si 0.791 3.209 18 H -0.218 1.218 19 H -0.211 1.211 20 H -0.171 1.171 21 C -0.038 4.038 22 C -0.170 4.170 23 C 0.341 3.659 24 O -0.431 6.431 25 O -0.321 6.321 26 C -0.059 4.059 27 C -0.226 4.226 28 H 0.074 0.926 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.163 0.837 39 H 0.172 0.828 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.291 0.709 46 H 0.120 0.880 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.151 3.639 12.561 22.371 hybrid contribution 0.803 -0.422 -0.749 1.176 sum -17.348 3.218 11.812 21.233 Atomic orbital electron populations 1.21675 0.93939 1.02202 1.02581 1.21935 0.97037 0.97378 1.01724 1.21718 0.77956 0.96803 1.03913 1.46562 1.05665 1.78608 1.02775 1.21841 0.97687 1.01783 0.84385 1.17956 0.90846 0.91741 0.86833 1.20768 1.00309 1.11148 0.90281 1.22037 0.92476 0.95334 0.99854 1.19946 0.94628 1.11753 0.93561 1.18409 0.86347 0.80535 0.84731 1.90517 1.23124 1.49066 1.85298 1.43321 1.10583 1.52247 1.11409 1.19415 0.93047 1.50668 0.86304 0.88758 1.25998 1.00151 0.92829 0.99248 1.70048 1.13762 1.33316 1.32953 0.85365 0.78447 0.77409 0.79634 1.21817 1.21129 1.17098 1.22233 0.82722 0.95862 1.03028 1.21749 0.87278 1.01608 1.06324 1.23086 0.88228 0.81612 0.72958 1.90727 1.84715 1.23826 1.43806 1.84511 1.21567 1.51397 1.74596 1.20878 0.99098 0.94296 0.91587 1.20681 0.92624 1.11539 0.97790 0.92630 0.91240 0.92389 0.93733 0.91879 0.90521 0.88362 0.93116 0.91315 0.89060 0.83660 0.82847 0.93092 0.92204 0.87491 0.86542 0.86271 0.70909 0.88024 0.83772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.14 -2.24 6.26 30.59 0.19 -2.05 16 3 C 0.12 1.81 5.18 86.38 0.45 2.26 16 4 N -0.63 -12.79 2.99 -722.15 -2.16 -14.95 16 5 C 0.09 1.29 10.22 127.77 1.31 2.60 16 6 C 0.23 6.55 6.55 38.48 0.25 6.80 16 7 C -0.20 -6.03 9.18 22.36 0.21 -5.82 16 8 C -0.08 -2.85 7.51 22.51 0.17 -2.68 16 9 C -0.19 -8.78 5.63 -20.07 -0.11 -8.89 16 10 C 0.51 28.12 6.65 86.66 0.58 28.70 16 11 O -0.60 -38.24 14.46 -4.13 -0.06 -38.30 16 12 N -0.46 -23.80 2.57 -639.29 -1.64 -25.45 16 13 C -0.37 -20.67 9.19 84.09 0.77 -19.89 16 14 H 0.09 4.89 7.95 -2.91 -0.02 4.86 16 15 C 0.02 1.44 4.12 84.95 0.35 1.79 16 16 N -0.87 -54.54 11.89 21.68 0.26 -54.28 16 17 Si 0.97 46.59 29.63 68.60 2.03 48.63 16 18 H -0.29 -14.62 7.11 99.48 0.71 -13.92 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.25 -10.74 7.11 99.48 0.71 -10.04 16 21 C 0.08 3.49 4.13 86.38 0.36 3.85 16 22 C -0.13 -4.12 5.13 29.85 0.15 -3.96 16 23 C 0.50 13.35 8.11 71.24 0.58 13.93 16 24 O -0.54 -17.37 16.74 21.97 0.37 -17.00 16 25 O -0.51 -9.62 13.42 -51.47 -0.69 -10.31 16 26 C -0.04 -1.62 9.58 22.51 0.22 -1.40 16 27 C -0.20 -6.58 9.18 22.36 0.21 -6.37 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 1.19 6.18 -2.39 -0.01 1.18 16 34 H 0.10 1.02 7.90 -2.38 -0.02 1.00 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 1.08 6.17 -2.38 -0.01 1.07 16 37 H 0.09 0.90 7.89 -2.39 -0.02 0.88 16 38 H 0.15 3.48 6.12 -2.91 -0.02 3.46 16 39 H 0.15 5.22 2.46 -2.91 -0.01 5.22 16 40 H 0.26 15.81 8.32 -92.71 -0.77 15.04 16 41 H 0.06 2.59 8.07 -2.39 -0.02 2.57 16 42 H 0.11 4.31 3.76 -6.08 -0.02 4.29 16 43 H 0.12 3.44 7.24 -2.39 -0.02 3.42 16 44 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 45 H 0.43 3.92 9.10 -74.06 -0.67 3.25 16 46 H 0.10 4.67 7.90 -2.91 -0.02 4.65 16 47 H 0.14 3.80 6.11 -2.91 -0.02 3.79 16 Total: -1.00 -82.47 381.72 4.81 -77.66 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.32 Total: 26.20 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 6.38 Total: 7.80 kcal Atomic # 7 Polarization: -91.13 SS G_CDS: -3.55 Total: -94.67 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -0.38 Total: -65.61 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.63 kcal Total: -82.47 4.81 -77.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595840008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.469 kcal (2) G-P(sol) polarization free energy of solvation -82.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds