Wall clock time and date at job start Tue Mar 31 2020 17:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47538 * 2 1 4 4 C 1.50698 * 109.47444 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00079 * 359.97438 * 4 3 2 6 6 O 1.34222 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.46502 * 109.47129 * 119.99918 * 2 1 3 8 8 C 1.34774 * 119.99907 * 299.99928 * 7 2 1 9 9 O 1.21279 * 120.00099 * 359.97438 * 8 7 2 10 10 C 1.50709 * 119.99817 * 179.97438 * 8 7 2 11 11 C 1.52997 * 109.47121 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47324 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47324 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47229 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99745 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99837 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99786 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00272 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46924 * 89.99709 * 18 16 14 20 20 H 1.48502 * 109.47235 * 209.99502 * 18 16 14 21 21 H 1.48498 * 109.47045 * 329.99877 * 18 16 14 22 22 C 1.50707 * 109.47004 * 239.99428 * 2 1 3 23 23 C 1.38227 * 119.62059 * 300.02603 * 22 2 1 24 24 C 1.38627 * 119.15702 * 179.74122 * 23 22 2 25 25 C 1.38669 * 118.42389 * 0.47826 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.49762 * 25 24 23 27 27 N 1.31856 * 119.61137 * 120.00033 * 22 2 1 28 28 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46890 * 300.00063 * 1 2 3 30 30 H 1.08995 * 109.47137 * 60.00070 * 1 2 3 31 31 H 1.09003 * 109.46701 * 300.00381 * 3 2 1 32 32 H 1.08998 * 109.47087 * 59.99497 * 3 2 1 33 33 H 0.96705 * 117.00119 * 179.97438 * 6 4 3 34 34 H 0.97005 * 120.00154 * 119.99559 * 7 2 1 35 35 H 1.09001 * 109.46848 * 300.00092 * 10 8 7 36 36 H 1.09000 * 109.46914 * 59.99849 * 10 8 7 37 37 H 1.08998 * 109.46996 * 300.00450 * 11 10 8 38 38 H 1.09008 * 109.47031 * 59.99934 * 11 10 8 39 39 H 1.09001 * 109.46831 * 300.00409 * 12 11 10 40 40 H 1.09000 * 109.46728 * 60.00041 * 12 11 10 41 41 H 1.08998 * 109.46996 * 300.00554 * 13 12 11 42 42 H 1.09008 * 109.47031 * 60.00037 * 13 12 11 43 43 H 0.97004 * 120.00328 * 180.02562 * 17 16 14 44 44 H 1.07998 * 120.41916 * 359.95342 * 23 22 2 45 45 H 1.08008 * 120.78688 * 180.22921 * 24 23 22 46 46 H 1.08002 * 120.42244 * 179.78279 * 25 24 23 47 47 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1512 0.3960 -0.0006 6 8 4.2182 2.6048 -0.0013 7 7 2.0183 -0.6906 1.1962 8 6 1.6928 -0.2301 2.4203 9 8 0.9959 0.7562 2.5315 10 6 2.1947 -0.9409 3.6508 11 6 1.6853 -0.2192 4.9000 12 6 2.1943 -0.9411 6.1493 13 6 1.6844 -0.2198 7.3985 14 6 2.1852 -0.9312 8.6290 15 1 2.8055 -1.8097 8.5298 16 6 1.8524 -0.4600 9.8812 17 7 2.2899 -1.0806 10.9550 18 14 0.7801 1.0600 10.0526 19 1 -0.6480 0.6556 10.0976 20 1 1.1318 1.7752 11.3056 21 1 1.0041 1.9573 8.8908 22 6 2.0323 -0.7106 -1.2305 23 6 1.6931 -2.0338 -1.4415 24 6 2.1560 -2.6765 -2.5793 25 6 2.9546 -1.9640 -3.4611 26 6 3.2517 -0.6433 -3.1838 27 7 2.7899 -0.0625 -2.0934 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 5.1839 2.5542 -0.0013 34 1 2.5760 -1.4793 1.1072 35 1 1.8309 -1.9684 3.6506 36 1 3.2847 -0.9413 3.6509 37 1 2.0494 0.8082 4.8999 38 1 0.5952 -0.2183 4.9001 39 1 1.8298 -1.9684 6.1490 40 1 3.2843 -0.9423 6.1494 41 1 2.0485 0.8076 7.3988 42 1 0.5943 -0.2189 7.3981 43 1 2.0555 -0.7493 11.8360 44 1 1.0726 -2.5593 -0.7308 45 1 1.9040 -3.7089 -2.7722 46 1 3.3357 -2.4340 -4.3557 47 1 3.8695 -0.0803 -3.8675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604079707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:33 Heat of formation + Delta-G solvation = -102.724181 kcal Electronic energy + Delta-G solvation = -28911.152471 eV Core-core repulsion = 24865.670193 eV Total energy + Delta-G solvation = -4045.482278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50668 -39.95593 -39.58538 -36.72110 -35.81052 -34.92636 -33.06055 -32.67543 -32.14218 -30.84690 -29.87685 -28.67497 -26.00753 -24.63192 -23.86664 -22.53559 -22.04982 -20.68628 -20.01281 -19.68052 -18.15741 -18.02927 -16.94860 -16.73213 -16.57984 -16.45004 -15.92299 -15.86243 -15.54052 -15.09267 -14.42746 -14.24682 -14.10413 -13.99680 -13.81942 -13.48913 -13.16098 -12.73229 -12.67437 -12.62372 -12.57071 -12.18375 -12.02999 -11.91309 -11.80290 -11.68767 -11.47434 -11.08382 -10.71473 -10.57791 -10.51505 -10.23073 -9.92190 -9.84813 -9.75038 -9.63004 -9.53007 -9.34563 -9.22260 -9.09713 -8.47702 -5.98793 -3.96163 0.64656 0.87687 2.31223 2.61550 2.85698 3.04563 3.36542 3.43530 3.49622 3.49709 3.70241 4.13837 4.37643 4.48597 4.51614 4.63652 4.71062 4.77920 4.90822 5.06815 5.21844 5.22701 5.26797 5.31434 5.33506 5.36537 5.42753 5.48043 5.53745 5.74037 5.74990 5.82052 5.95446 6.05775 6.17313 6.24701 6.27123 6.44214 6.48632 6.70698 6.84307 7.01317 7.38302 7.40450 7.53139 7.58146 7.86671 7.90990 8.17385 8.60316 9.06357 9.64569 11.14724 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.002267 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.866912 B =12347.011064 C =12734.717222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.242 3.758 3 C -0.117 4.117 4 C 0.498 3.502 5 O -0.512 6.512 6 O -0.521 6.521 7 N -0.719 5.719 8 C 0.518 3.482 9 O -0.535 6.535 10 C -0.139 4.139 11 C -0.104 4.104 12 C -0.103 4.103 13 C -0.015 4.015 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.264 1.264 22 C 0.137 3.863 23 C -0.159 4.159 24 C -0.073 4.073 25 C -0.172 4.172 26 C 0.104 3.896 27 N -0.467 5.467 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.126 0.874 33 H 0.406 0.594 34 H 0.405 0.595 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.134 0.866 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 -0.159 -34.399 34.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.155 3.845 3 C -0.155 4.155 4 C 0.341 3.659 5 O -0.399 6.399 6 O -0.333 6.333 7 N -0.373 5.373 8 C 0.306 3.694 9 O -0.412 6.412 10 C -0.179 4.179 11 C -0.142 4.142 12 C -0.141 4.141 13 C -0.052 4.052 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.001 4.001 23 C -0.180 4.180 24 C -0.099 4.099 25 C -0.192 4.192 26 C -0.053 4.053 27 N -0.176 5.176 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.131 0.869 32 H 0.144 0.856 33 H 0.264 0.736 34 H 0.240 0.760 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.152 0.848 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.559 1.167 -33.954 33.978 hybrid contribution 0.367 -0.691 -0.153 0.798 sum -0.192 0.475 -34.107 34.110 Atomic orbital electron populations 1.22259 0.91696 1.03450 1.04568 1.18757 0.94334 0.89517 0.81855 1.21663 0.88426 0.98319 1.07092 1.22980 0.91312 0.80791 0.70844 1.90630 1.70413 1.33168 1.45701 1.84525 1.26333 1.36412 1.86045 1.46183 1.54228 1.32510 1.04372 1.21071 0.79402 0.84554 0.84379 1.90624 1.37654 1.26218 1.86692 1.21783 1.02620 1.00885 0.92589 1.21472 1.01172 0.99441 0.92158 1.21477 0.99984 0.98989 0.93607 1.19573 0.95947 0.96163 0.93559 1.21187 1.31978 1.13249 0.89259 0.91133 1.25049 0.95816 0.96906 0.95907 1.69923 1.46122 1.40664 0.97853 0.86767 0.81014 0.83893 0.77586 1.20326 1.21485 1.18882 1.20827 0.93363 0.91400 0.94547 1.21888 1.01736 0.95450 0.98878 1.21581 0.94866 1.00216 0.93206 1.22155 0.99925 0.96095 1.01024 1.22679 0.96535 0.92633 0.93448 1.67326 1.08140 1.39386 1.02740 0.91531 0.88775 0.91361 0.86948 0.85634 0.73643 0.76020 0.88926 0.89040 0.91825 0.91705 0.92878 0.92900 0.96641 0.97055 0.92839 0.84588 0.84639 0.84768 0.82848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.21 37.16 0.31 -1.11 16 2 C 0.24 2.37 0.45 -132.97 -0.06 2.31 16 3 C -0.12 -1.24 4.28 -27.89 -0.12 -1.36 16 4 C 0.50 5.83 7.01 36.00 0.25 6.08 16 5 O -0.51 -6.79 14.04 -18.75 -0.26 -7.05 16 6 O -0.52 -5.24 13.42 -39.24 -0.53 -5.77 16 7 N -0.72 -7.43 3.80 -48.68 -0.18 -7.61 16 8 C 0.52 6.60 7.25 -10.98 -0.08 6.52 16 9 O -0.54 -8.20 12.19 5.56 0.07 -8.13 16 10 C -0.14 -1.77 5.70 -27.88 -0.16 -1.93 16 11 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 12 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 13 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.51 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.54 13.96 55.43 0.77 -27.77 16 18 Si 0.88 22.43 27.47 -169.99 -4.67 17.76 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 22 C 0.14 1.28 4.64 -82.58 -0.38 0.89 16 23 C -0.16 -1.19 8.88 -39.44 -0.35 -1.54 16 24 C -0.07 -0.45 10.18 -39.28 -0.40 -0.85 16 25 C -0.17 -1.06 10.11 -39.44 -0.40 -1.46 16 26 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 27 N -0.47 -4.62 7.01 -9.47 -0.07 -4.68 16 28 H 0.07 0.51 7.37 -51.93 -0.38 0.13 16 29 H 0.09 1.01 6.17 -51.93 -0.32 0.69 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.04 8.05 -51.93 -0.42 0.62 16 32 H 0.13 1.51 6.17 -51.93 -0.32 1.19 16 33 H 0.41 2.50 9.10 45.56 0.41 2.91 16 34 H 0.40 3.76 8.25 -40.82 -0.34 3.43 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.06 1.11 8.10 -51.92 -0.42 0.69 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 42 H 0.01 0.27 7.57 -51.92 -0.39 -0.12 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.14 0.82 7.57 -52.49 -0.40 0.42 16 45 H 0.14 0.51 8.06 -52.48 -0.42 0.09 16 46 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 47 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -36.29 384.20 -7.81 -44.10 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.34 Total: 3.39 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -2.39 Total: -10.04 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.52 Total: -40.06 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.72 Total: -20.95 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -4.67 Total: 17.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.29 -7.81 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604079707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.625 kcal (2) G-P(sol) polarization free energy of solvation -36.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds