Wall clock time and date at job start Tue Mar 31 2020 17:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47538 * 2 1 4 4 C 1.50698 * 109.47444 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00079 * 359.97438 * 4 3 2 6 6 O 1.34222 * 119.99943 * 179.97438 * 4 3 2 7 7 N 1.46502 * 109.47129 * 119.99918 * 2 1 3 8 8 C 1.34774 * 119.99907 * 299.99928 * 7 2 1 9 9 O 1.21279 * 120.00099 * 359.97438 * 8 7 2 10 10 C 1.50709 * 119.99817 * 179.97438 * 8 7 2 11 11 C 1.52997 * 109.47121 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47324 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47324 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47229 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99745 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99837 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99786 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00272 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.46924 * 89.99709 * 18 16 14 20 20 H 1.48502 * 109.47235 * 209.99502 * 18 16 14 21 21 H 1.48498 * 109.47045 * 329.99877 * 18 16 14 22 22 C 1.50707 * 109.47004 * 239.99428 * 2 1 3 23 23 C 1.38227 * 119.62059 * 300.02603 * 22 2 1 24 24 C 1.38627 * 119.15702 * 179.74122 * 23 22 2 25 25 C 1.38669 * 118.42389 * 0.47826 * 24 23 22 26 26 C 1.38186 * 119.16143 * 359.49762 * 25 24 23 27 27 N 1.31856 * 119.61137 * 120.00033 * 22 2 1 28 28 H 1.08998 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46890 * 300.00063 * 1 2 3 30 30 H 1.08995 * 109.47137 * 60.00070 * 1 2 3 31 31 H 1.09003 * 109.46701 * 300.00381 * 3 2 1 32 32 H 1.08998 * 109.47087 * 59.99497 * 3 2 1 33 33 H 0.96705 * 117.00119 * 179.97438 * 6 4 3 34 34 H 0.97005 * 120.00154 * 119.99559 * 7 2 1 35 35 H 1.09001 * 109.46848 * 300.00092 * 10 8 7 36 36 H 1.09000 * 109.46914 * 59.99849 * 10 8 7 37 37 H 1.08998 * 109.46996 * 300.00450 * 11 10 8 38 38 H 1.09008 * 109.47031 * 59.99934 * 11 10 8 39 39 H 1.09001 * 109.46831 * 300.00409 * 12 11 10 40 40 H 1.09000 * 109.46728 * 60.00041 * 12 11 10 41 41 H 1.08998 * 109.46996 * 300.00554 * 13 12 11 42 42 H 1.09008 * 109.47031 * 60.00037 * 13 12 11 43 43 H 0.97004 * 120.00328 * 180.02562 * 17 16 14 44 44 H 1.07998 * 120.41916 * 359.95342 * 23 22 2 45 45 H 1.08008 * 120.78688 * 180.22921 * 24 23 22 46 46 H 1.08002 * 120.42244 * 179.78279 * 25 24 23 47 47 H 1.07996 * 119.61757 * 180.25243 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1512 0.3960 -0.0006 6 8 4.2182 2.6048 -0.0013 7 7 2.0183 -0.6906 1.1962 8 6 1.6928 -0.2301 2.4203 9 8 0.9959 0.7562 2.5315 10 6 2.1947 -0.9409 3.6508 11 6 1.6853 -0.2192 4.9000 12 6 2.1943 -0.9411 6.1493 13 6 1.6844 -0.2198 7.3985 14 6 2.1852 -0.9312 8.6290 15 1 2.8055 -1.8097 8.5298 16 6 1.8524 -0.4600 9.8812 17 7 2.2899 -1.0806 10.9550 18 14 0.7801 1.0600 10.0526 19 1 -0.6480 0.6556 10.0976 20 1 1.1318 1.7752 11.3056 21 1 1.0041 1.9573 8.8908 22 6 2.0323 -0.7106 -1.2305 23 6 1.6931 -2.0338 -1.4415 24 6 2.1560 -2.6765 -2.5793 25 6 2.9546 -1.9640 -3.4611 26 6 3.2517 -0.6433 -3.1838 27 7 2.7899 -0.0625 -2.0934 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 5.1839 2.5542 -0.0013 34 1 2.5760 -1.4793 1.1072 35 1 1.8309 -1.9684 3.6506 36 1 3.2847 -0.9413 3.6509 37 1 2.0494 0.8082 4.8999 38 1 0.5952 -0.2183 4.9001 39 1 1.8298 -1.9684 6.1490 40 1 3.2843 -0.9423 6.1494 41 1 2.0485 0.8076 7.3988 42 1 0.5943 -0.2189 7.3981 43 1 2.0555 -0.7493 11.8360 44 1 1.0726 -2.5593 -0.7308 45 1 1.9040 -3.7089 -2.7722 46 1 3.3357 -2.4340 -4.3557 47 1 3.8695 -0.0803 -3.8675 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604079707.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:32 Heat of formation + Delta-G solvation = -127.007730 kcal Electronic energy + Delta-G solvation = -28912.205485 eV Core-core repulsion = 24865.670193 eV Total energy + Delta-G solvation = -4046.535292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.24498 -40.64612 -40.52185 -37.58357 -36.78316 -36.40128 -34.60770 -33.66169 -33.09322 -31.72217 -31.24532 -29.42915 -27.63537 -25.39388 -24.41564 -23.86979 -22.97382 -21.89701 -21.47636 -20.56491 -18.98790 -18.85122 -18.80394 -17.73658 -17.44248 -17.01196 -16.92606 -16.61306 -16.51751 -16.31791 -15.74351 -15.55762 -15.16055 -14.81861 -14.64613 -14.57368 -14.11265 -14.01439 -13.77440 -13.72415 -13.51874 -13.38708 -13.29822 -13.03303 -12.78104 -12.65761 -12.43114 -12.33750 -12.29125 -12.04910 -11.74588 -11.49471 -11.43887 -11.33169 -11.24767 -10.76174 -10.75382 -10.65458 -10.38900 -10.20426 -9.91568 -8.29052 -6.32265 0.11821 0.38358 1.35586 1.37314 1.42722 1.50258 1.64650 2.06427 2.27889 2.36760 2.92792 3.06299 3.08271 3.49247 3.68529 3.93074 4.03818 4.08355 4.09806 4.17065 4.24674 4.27198 4.42346 4.53286 4.56209 4.64064 4.65673 4.69194 4.74608 4.77764 4.82164 4.87109 4.90145 5.16435 5.20361 5.21713 5.23046 5.28546 5.30701 5.45565 5.61531 5.66768 5.69491 5.72003 5.77915 6.30192 6.53055 6.75748 7.03261 7.11401 7.24366 7.32493 8.87606 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.002267 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.866912 B =12347.011064 C =12734.717222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 C -0.116 4.116 4 C 0.497 3.503 5 O -0.530 6.530 6 O -0.524 6.524 7 N -0.706 5.706 8 C 0.519 3.481 9 O -0.564 6.564 10 C -0.133 4.133 11 C -0.094 4.094 12 C -0.095 4.095 13 C -0.016 4.016 14 C -0.531 4.531 15 H 0.035 0.965 16 C 0.002 3.998 17 N -0.951 5.951 18 Si 0.949 3.051 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.251 1.251 22 C 0.119 3.881 23 C -0.164 4.164 24 C -0.075 4.075 25 C -0.167 4.167 26 C 0.085 3.915 27 N -0.493 5.493 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.421 0.579 34 H 0.411 0.589 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.013 0.987 42 H 0.016 0.984 43 H 0.266 0.734 44 H 0.149 0.851 45 H 0.163 0.837 46 H 0.162 0.838 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -0.344 -36.784 36.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.155 3.845 3 C -0.155 4.155 4 C 0.340 3.660 5 O -0.419 6.419 6 O -0.338 6.338 7 N -0.359 5.359 8 C 0.307 3.693 9 O -0.444 6.444 10 C -0.173 4.173 11 C -0.132 4.132 12 C -0.133 4.133 13 C -0.053 4.053 14 C -0.569 4.569 15 H 0.053 0.947 16 C -0.195 4.195 17 N -0.592 5.592 18 Si 0.773 3.227 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.175 1.175 22 C -0.019 4.019 23 C -0.184 4.184 24 C -0.101 4.101 25 C -0.186 4.186 26 C -0.072 4.072 27 N -0.202 5.202 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.281 0.719 34 H 0.247 0.753 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.167 0.833 45 H 0.180 0.820 46 H 0.179 0.821 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.186 0.971 -36.374 36.407 hybrid contribution 0.677 -0.700 0.527 1.108 sum -0.508 0.271 -35.847 35.852 Atomic orbital electron populations 1.22191 0.91054 1.04060 1.04021 1.18809 0.94770 0.88965 0.81931 1.21673 0.87962 0.99122 1.06696 1.23165 0.91724 0.80778 0.70331 1.90610 1.70855 1.33745 1.46667 1.84496 1.27805 1.35805 1.85661 1.46054 1.53520 1.32334 1.03985 1.20980 0.79147 0.84153 0.85011 1.90627 1.39128 1.27471 1.87130 1.21677 1.03183 1.01563 0.90870 1.21254 1.00753 0.98751 0.92411 1.21344 0.99829 0.99009 0.93070 1.19566 0.96078 0.95949 0.93724 1.21549 1.31372 1.12515 0.91431 0.94689 1.26024 0.97433 1.00502 0.95504 1.70067 1.47853 1.42736 0.98578 0.85667 0.79273 0.79697 0.78088 1.19045 1.20831 1.17497 1.20743 0.94489 0.92219 0.94474 1.22077 1.01763 0.94829 0.99683 1.21960 0.94186 1.01425 0.92499 1.22485 0.99004 0.95429 1.01716 1.23066 0.96971 0.93786 0.93353 1.67248 1.08875 1.40428 1.03638 0.90321 0.90863 0.90262 0.85968 0.87224 0.71856 0.75287 0.86554 0.88017 0.93036 0.92157 0.92445 0.93047 0.96838 0.96599 0.92534 0.83349 0.81961 0.82080 0.81439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.21 71.98 0.59 -1.98 16 2 C 0.24 4.50 0.45 2.86 0.00 4.51 16 3 C -0.12 -2.44 4.28 29.85 0.13 -2.31 16 4 C 0.50 11.39 7.01 71.24 0.50 11.89 16 5 O -0.53 -13.68 14.04 21.96 0.31 -13.37 16 6 O -0.52 -10.24 13.42 -51.34 -0.69 -10.93 16 7 N -0.71 -13.73 3.80 -426.31 -1.62 -15.35 16 8 C 0.52 12.70 7.25 87.66 0.64 13.34 16 9 O -0.56 -17.13 12.19 -3.03 -0.04 -17.16 16 10 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 11 C -0.09 -3.01 4.50 30.59 0.14 -2.87 16 12 C -0.09 -3.69 5.15 30.59 0.16 -3.54 16 13 C -0.02 -0.77 4.04 29.85 0.12 -0.65 16 14 C -0.53 -31.55 9.66 25.60 0.25 -31.30 16 15 H 0.03 2.25 7.99 -2.91 -0.02 2.23 16 16 C 0.00 0.11 5.47 84.65 0.46 0.57 16 17 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 18 Si 0.95 46.09 27.47 68.60 1.88 47.97 16 19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 22 C 0.12 2.04 4.64 42.55 0.20 2.24 16 23 C -0.16 -2.09 8.88 22.36 0.20 -1.89 16 24 C -0.07 -0.71 10.18 22.47 0.23 -0.48 16 25 C -0.17 -1.61 10.11 22.36 0.23 -1.38 16 26 C 0.09 1.19 11.18 84.67 0.95 2.13 16 27 N -0.49 -9.18 7.01 -183.88 -1.29 -10.47 16 28 H 0.08 1.08 7.37 -2.39 -0.02 1.06 16 29 H 0.07 1.56 6.17 -2.39 -0.01 1.54 16 30 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.12 2.23 8.05 -2.39 -0.02 2.21 16 32 H 0.11 2.68 6.17 -2.39 -0.01 2.67 16 33 H 0.42 4.87 9.10 -74.05 -0.67 4.20 16 34 H 0.41 6.97 8.25 -92.70 -0.76 6.20 16 35 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.06 1.99 8.10 -2.38 -0.02 1.97 16 39 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.01 0.65 7.20 -2.39 -0.02 0.64 16 42 H 0.02 0.75 7.57 -2.38 -0.02 0.73 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.15 1.40 7.57 -2.91 -0.02 1.38 16 45 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 46 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 47 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -79.18 384.20 3.31 -75.87 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -0.50 Total: 18.90 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 4.95 Total: -14.73 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.61 Total: -86.54 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -0.42 Total: -41.47 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 1.88 Total: 47.97 kcal Total: -79.18 3.31 -75.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604079707.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.140 kcal (2) G-P(sol) polarization free energy of solvation -79.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds