Wall clock time and date at job start Tue Mar 31 2020 17:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.50708 * 109.46857 * 184.99680 * 3 2 1 5 5 O 1.20822 * 119.99982 * 359.97438 * 4 3 2 6 6 O 1.34229 * 119.99726 * 180.02562 * 4 3 2 7 7 N 1.46493 * 109.47649 * 239.99658 * 2 1 3 8 8 C 1.34784 * 119.99864 * 59.99998 * 7 2 1 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 2 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 2 11 11 C 1.53001 * 109.47168 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46614 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00477 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00282 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47071 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47374 * 120.00023 * 18 16 14 21 21 H 1.48504 * 109.46768 * 239.99746 * 18 16 14 22 22 C 1.50698 * 109.47001 * 119.99458 * 2 1 3 23 23 C 1.38232 * 119.61482 * 65.00356 * 22 2 1 24 24 C 1.38631 * 119.15807 * 179.97438 * 23 22 2 25 25 C 1.38667 * 118.42423 * 359.97438 * 24 23 22 26 26 C 1.38181 * 119.16111 * 0.02562 * 25 24 23 27 27 N 1.31854 * 119.62503 * 244.72953 * 22 2 1 28 28 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47436 * 300.00406 * 1 2 3 30 30 H 1.09006 * 109.46641 * 60.00296 * 1 2 3 31 31 H 1.08998 * 109.47175 * 304.99110 * 3 2 1 32 32 H 1.09000 * 109.47496 * 64.99949 * 3 2 1 33 33 H 0.96701 * 116.99589 * 179.97438 * 6 4 3 34 34 H 0.97000 * 120.00740 * 239.72691 * 7 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 36 36 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 37 37 H 1.09000 * 109.47339 * 299.99895 * 11 10 8 38 38 H 1.09002 * 109.46926 * 60.00175 * 11 10 8 39 39 H 1.09000 * 109.46966 * 300.00313 * 12 11 10 40 40 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 41 41 H 1.08998 * 109.47018 * 300.00053 * 13 12 11 42 42 H 1.09002 * 109.47113 * 60.00475 * 13 12 11 43 43 H 0.96990 * 120.00017 * 180.02562 * 17 16 14 44 44 H 1.08000 * 120.42236 * 359.97438 * 23 22 2 45 45 H 1.08000 * 120.78866 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.42193 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.61557 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5419 1.4443 -0.1238 5 8 4.1428 0.3991 -0.2033 6 8 4.2122 2.6071 -0.1446 7 7 2.0184 -0.6906 -1.1960 8 6 1.6929 -0.2302 -2.4203 9 8 0.9915 0.7530 -2.5315 10 6 2.2004 -0.9370 -3.6506 11 6 1.6888 -0.2170 -4.8999 12 6 2.2046 -0.9342 -6.1491 13 6 1.6935 -0.2137 -7.3984 14 6 2.2010 -0.9206 -8.6288 15 1 2.8252 -1.7963 -8.5297 16 6 1.8684 -0.4493 -9.8810 17 7 1.1078 0.6168 -10.0019 18 14 2.4969 -1.3259 -11.4062 19 1 3.3259 -2.4897 -11.0020 20 1 1.3451 -1.7958 -12.2171 21 1 3.3199 -0.3885 -12.2120 22 6 2.0323 -0.7103 1.2305 23 6 1.7812 -2.0602 1.3904 24 6 2.2481 -2.7042 2.5258 25 6 2.9537 -1.9634 3.4618 26 6 3.1661 -0.6172 3.2337 27 7 2.7108 -0.0383 2.1396 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6054 1.9815 -0.8419 32 1 1.7516 1.9299 0.9313 33 1 5.1746 2.5576 -0.2250 34 1 2.5794 -1.4769 -1.1071 35 1 3.2903 -0.9322 -3.6488 36 1 1.8415 -1.9663 -3.6524 37 1 0.5988 -0.2221 -4.9016 38 1 2.0473 0.8124 -4.8984 39 1 3.2945 -0.9287 -6.1472 40 1 1.8464 -1.9637 -6.1509 41 1 0.6035 -0.2189 -7.4004 42 1 2.0520 0.8156 -7.3964 43 1 0.8736 0.9481 -10.8828 44 1 1.2283 -2.6062 0.6403 45 1 2.0673 -3.7582 2.6772 46 1 3.3325 -2.4326 4.3577 47 1 3.7150 -0.0333 3.9576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604079725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:35 Heat of formation + Delta-G solvation = -108.724310 kcal Electronic energy + Delta-G solvation = -28853.773396 eV Core-core repulsion = 24808.030933 eV Total energy + Delta-G solvation = -4045.742463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46372 -39.98355 -39.50645 -36.67871 -35.78468 -34.78593 -33.07098 -32.67724 -32.06956 -30.81837 -29.48766 -28.61913 -25.72706 -24.59938 -23.87741 -22.63996 -22.09430 -20.73469 -19.93705 -19.64328 -18.09472 -18.05095 -16.92158 -16.65201 -16.42745 -16.16436 -15.88979 -15.81808 -15.46147 -15.04356 -14.46892 -14.36278 -14.04451 -13.97324 -13.73801 -13.50590 -13.10912 -12.69881 -12.66901 -12.53559 -12.42255 -12.10386 -11.84943 -11.76032 -11.61624 -11.54322 -11.47136 -10.97190 -10.55763 -10.50176 -10.45984 -10.37980 -10.26421 -9.87141 -9.68754 -9.58656 -9.46892 -9.19087 -9.14188 -8.94011 -8.28663 -5.93361 -3.95588 0.65940 0.87566 2.30217 2.69669 2.89314 3.08768 3.34487 3.41633 3.45768 3.49136 3.72516 4.17060 4.39622 4.50036 4.51041 4.66146 4.73019 4.80290 4.98215 5.08632 5.25549 5.29345 5.32101 5.38561 5.41538 5.43358 5.46834 5.52630 5.56070 5.75607 5.76901 5.91416 6.00897 6.17833 6.26040 6.31483 6.35551 6.49093 6.58551 6.87572 7.05238 7.23114 7.45191 7.58712 7.76831 7.90711 7.92855 8.08426 8.25647 8.50465 9.12389 9.67979 11.17995 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.002159 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.067382 B =12963.095976 C =13343.108075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.242 3.758 3 C -0.117 4.117 4 C 0.496 3.504 5 O -0.514 6.514 6 O -0.520 6.520 7 N -0.719 5.719 8 C 0.517 3.483 9 O -0.534 6.534 10 C -0.138 4.138 11 C -0.101 4.101 12 C -0.111 4.111 13 C 0.020 3.980 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.138 3.862 23 C -0.160 4.160 24 C -0.071 4.071 25 C -0.173 4.173 26 C 0.105 3.895 27 N -0.472 5.472 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.406 0.594 34 H 0.404 0.596 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -3.950 32.020 32.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.155 3.845 3 C -0.155 4.155 4 C 0.339 3.661 5 O -0.402 6.402 6 O -0.332 6.332 7 N -0.372 5.372 8 C 0.306 3.694 9 O -0.411 6.411 10 C -0.178 4.178 11 C -0.139 4.139 12 C -0.148 4.148 13 C -0.017 4.017 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C 0.000 4.000 23 C -0.180 4.180 24 C -0.097 4.097 25 C -0.193 4.193 26 C -0.053 4.053 27 N -0.181 5.181 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.264 0.736 34 H 0.239 0.761 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.987 -2.507 31.683 31.844 hybrid contribution 1.266 -1.842 -0.594 2.313 sum 3.253 -4.349 31.089 31.560 Atomic orbital electron populations 1.22254 0.91624 1.03434 1.04608 1.18738 0.94397 0.89495 0.81844 1.21683 0.88381 0.98449 1.06996 1.23083 0.91267 0.80782 0.70967 1.90631 1.70369 1.33253 1.45956 1.84532 1.26734 1.36353 1.85537 1.46183 1.54030 1.32690 1.04327 1.21081 0.79488 0.84512 0.84363 1.90632 1.37439 1.26332 1.86675 1.21793 1.02441 1.00842 0.92751 1.21440 1.01153 0.99424 0.91925 1.21651 0.99464 0.98906 0.94799 1.19099 0.96444 0.95604 0.90581 1.21324 1.30910 1.12316 0.91141 0.92731 1.25048 0.95321 0.95123 0.99149 1.69985 1.36972 1.23269 1.23252 0.86559 0.78621 0.79669 0.83276 1.19802 1.21062 1.21073 1.20872 0.93668 0.91135 0.94339 1.21891 1.01684 0.95287 0.99119 1.21588 0.94723 1.00431 0.92986 1.22155 1.00563 0.95804 1.00796 1.22699 0.96020 0.92663 0.93872 1.67326 1.08480 1.40220 1.02116 0.91580 0.91368 0.88694 0.85652 0.86636 0.73606 0.76057 0.89202 0.89126 0.91714 0.91868 0.93552 0.93498 0.96578 0.96602 0.93123 0.84556 0.84618 0.84744 0.82747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.26 37.16 0.31 -1.19 16 2 C 0.24 2.48 0.45 -132.97 -0.06 2.42 16 3 C -0.12 -1.29 4.20 -27.88 -0.12 -1.41 16 4 C 0.50 6.05 7.18 36.01 0.26 6.31 16 5 O -0.51 -7.04 14.42 -18.75 -0.27 -7.31 16 6 O -0.52 -5.46 13.42 -39.26 -0.53 -5.99 16 7 N -0.72 -7.81 3.44 -48.69 -0.17 -7.98 16 8 C 0.52 7.01 7.25 -10.98 -0.08 6.93 16 9 O -0.53 -8.67 12.25 5.56 0.07 -8.60 16 10 C -0.14 -1.89 5.70 -27.89 -0.16 -2.05 16 11 C -0.10 -1.81 4.50 -26.73 -0.12 -1.94 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 18 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 C 0.14 1.32 4.64 -82.59 -0.38 0.94 16 23 C -0.16 -1.23 8.73 -39.44 -0.34 -1.58 16 24 C -0.07 -0.45 10.18 -39.28 -0.40 -0.85 16 25 C -0.17 -1.08 10.11 -39.44 -0.40 -1.48 16 26 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 27 N -0.47 -4.71 7.69 -9.47 -0.07 -4.78 16 28 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.08 6.16 -51.93 -0.32 0.76 16 31 H 0.13 1.56 6.33 -51.93 -0.33 1.23 16 32 H 0.12 1.12 7.80 -51.93 -0.41 0.71 16 33 H 0.41 2.66 9.10 45.56 0.41 3.08 16 34 H 0.40 3.95 8.04 -40.82 -0.33 3.62 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.14 0.86 7.87 -52.49 -0.41 0.44 16 45 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 47 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -36.04 388.82 -8.16 -44.20 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.39 Total: 3.70 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -2.38 Total: -9.22 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.50 Total: -39.69 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.73 Total: -21.90 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.04 -8.16 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604079725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.520 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds