Wall clock time and date at job start Tue Mar 31 2020 17:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46908 * 2 1 4 4 C 1.50708 * 109.46857 * 184.99680 * 3 2 1 5 5 O 1.20822 * 119.99982 * 359.97438 * 4 3 2 6 6 O 1.34229 * 119.99726 * 180.02562 * 4 3 2 7 7 N 1.46493 * 109.47649 * 239.99658 * 2 1 3 8 8 C 1.34784 * 119.99864 * 59.99998 * 7 2 1 9 9 O 1.21283 * 119.99649 * 359.72839 * 8 7 2 10 10 C 1.50694 * 119.99988 * 179.72721 * 8 7 2 11 11 C 1.53001 * 109.47168 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47355 * 179.97438 * 11 10 8 13 13 C 1.53003 * 109.46986 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.46614 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00477 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99722 * 180.02562 * 14 13 12 17 17 N 1.31522 * 120.00282 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47071 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47374 * 120.00023 * 18 16 14 21 21 H 1.48504 * 109.46768 * 239.99746 * 18 16 14 22 22 C 1.50698 * 109.47001 * 119.99458 * 2 1 3 23 23 C 1.38232 * 119.61482 * 65.00356 * 22 2 1 24 24 C 1.38631 * 119.15807 * 179.97438 * 23 22 2 25 25 C 1.38667 * 118.42423 * 359.97438 * 24 23 22 26 26 C 1.38181 * 119.16111 * 0.02562 * 25 24 23 27 27 N 1.31854 * 119.62503 * 244.72953 * 22 2 1 28 28 H 1.08998 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47436 * 300.00406 * 1 2 3 30 30 H 1.09006 * 109.46641 * 60.00296 * 1 2 3 31 31 H 1.08998 * 109.47175 * 304.99110 * 3 2 1 32 32 H 1.09000 * 109.47496 * 64.99949 * 3 2 1 33 33 H 0.96701 * 116.99589 * 179.97438 * 6 4 3 34 34 H 0.97000 * 120.00740 * 239.72691 * 7 2 1 35 35 H 1.08998 * 109.47224 * 299.99701 * 10 8 7 36 36 H 1.09002 * 109.47054 * 60.00213 * 10 8 7 37 37 H 1.09000 * 109.47339 * 299.99895 * 11 10 8 38 38 H 1.09002 * 109.46926 * 60.00175 * 11 10 8 39 39 H 1.09000 * 109.46966 * 300.00313 * 12 11 10 40 40 H 1.09002 * 109.46807 * 60.00291 * 12 11 10 41 41 H 1.08998 * 109.47018 * 300.00053 * 13 12 11 42 42 H 1.09002 * 109.47113 * 60.00475 * 13 12 11 43 43 H 0.96990 * 120.00017 * 180.02562 * 17 16 14 44 44 H 1.08000 * 120.42236 * 359.97438 * 23 22 2 45 45 H 1.08000 * 120.78866 * 180.02562 * 24 23 22 46 46 H 1.07999 * 120.42193 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.61557 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5419 1.4443 -0.1238 5 8 4.1428 0.3991 -0.2033 6 8 4.2122 2.6071 -0.1446 7 7 2.0184 -0.6906 -1.1960 8 6 1.6929 -0.2302 -2.4203 9 8 0.9915 0.7530 -2.5315 10 6 2.2004 -0.9370 -3.6506 11 6 1.6888 -0.2170 -4.8999 12 6 2.2046 -0.9342 -6.1491 13 6 1.6935 -0.2137 -7.3984 14 6 2.2010 -0.9206 -8.6288 15 1 2.8252 -1.7963 -8.5297 16 6 1.8684 -0.4493 -9.8810 17 7 1.1078 0.6168 -10.0019 18 14 2.4969 -1.3259 -11.4062 19 1 3.3259 -2.4897 -11.0020 20 1 1.3451 -1.7958 -12.2171 21 1 3.3199 -0.3885 -12.2120 22 6 2.0323 -0.7103 1.2305 23 6 1.7812 -2.0602 1.3904 24 6 2.2481 -2.7042 2.5258 25 6 2.9537 -1.9634 3.4618 26 6 3.1661 -0.6172 3.2337 27 7 2.7108 -0.0383 2.1396 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.6054 1.9815 -0.8419 32 1 1.7516 1.9299 0.9313 33 1 5.1746 2.5576 -0.2250 34 1 2.5794 -1.4769 -1.1071 35 1 3.2903 -0.9322 -3.6488 36 1 1.8415 -1.9663 -3.6524 37 1 0.5988 -0.2221 -4.9016 38 1 2.0473 0.8124 -4.8984 39 1 3.2945 -0.9287 -6.1472 40 1 1.8464 -1.9637 -6.1509 41 1 0.6035 -0.2189 -7.4004 42 1 2.0520 0.8156 -7.3964 43 1 0.8736 0.9481 -10.8828 44 1 1.2283 -2.6062 0.6403 45 1 2.0673 -3.7582 2.6772 46 1 3.3325 -2.4326 4.3577 47 1 3.7150 -0.0333 3.9576 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604079725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:34 Heat of formation + Delta-G solvation = -132.323550 kcal Electronic energy + Delta-G solvation = -28854.796736 eV Core-core repulsion = 24808.030933 eV Total energy + Delta-G solvation = -4046.765803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.24711 -40.71070 -40.50612 -37.59696 -36.79067 -36.39581 -34.61665 -33.68680 -33.02561 -31.55734 -31.07440 -29.43706 -27.47381 -25.43974 -24.46639 -24.11777 -23.01134 -21.98416 -21.44045 -20.58469 -19.00759 -18.84878 -18.41103 -17.78451 -17.39444 -17.00477 -16.93394 -16.64104 -16.53125 -16.47682 -15.74647 -15.50435 -15.10651 -14.80930 -14.61388 -14.48681 -14.11477 -13.99456 -13.73981 -13.61141 -13.45057 -13.35237 -13.20560 -12.98609 -12.81163 -12.68141 -12.41903 -12.38441 -12.31302 -12.12560 -12.10795 -11.49841 -11.37130 -11.33200 -11.10041 -10.79240 -10.64000 -10.55184 -10.40452 -10.20187 -9.91078 -8.18466 -6.30333 0.11681 0.37085 1.36397 1.40237 1.41144 1.54635 1.64965 2.04734 2.26588 2.42072 2.90471 3.07328 3.14105 3.49260 3.68911 3.93124 4.05491 4.08573 4.09864 4.16530 4.24334 4.26696 4.43621 4.51635 4.55753 4.65271 4.68199 4.70295 4.74368 4.81826 4.84710 4.86772 4.90674 5.20315 5.21170 5.23101 5.29253 5.33331 5.37846 5.46814 5.58102 5.67183 5.77500 5.79126 5.88829 6.26238 6.54117 6.88096 7.01849 7.06362 7.25577 7.39069 8.93889 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020613 B = 0.002159 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.067382 B =12963.095976 C =13343.108075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 C -0.116 4.116 4 C 0.494 3.506 5 O -0.531 6.531 6 O -0.523 6.523 7 N -0.703 5.703 8 C 0.517 3.483 9 O -0.567 6.567 10 C -0.130 4.130 11 C -0.092 4.092 12 C -0.097 4.097 13 C 0.020 3.980 14 C -0.540 4.540 15 H 0.064 0.936 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.278 1.278 21 H -0.279 1.279 22 C 0.119 3.881 23 C -0.165 4.165 24 C -0.073 4.073 25 C -0.167 4.167 26 C 0.087 3.913 27 N -0.498 5.498 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.422 0.578 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.050 0.950 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.061 0.939 41 H -0.012 1.012 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.148 0.852 45 H 0.164 0.836 46 H 0.163 0.837 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.868 -6.554 33.444 34.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.155 3.845 3 C -0.155 4.155 4 C 0.338 3.662 5 O -0.421 6.421 6 O -0.336 6.336 7 N -0.356 5.356 8 C 0.305 3.695 9 O -0.447 6.447 10 C -0.170 4.170 11 C -0.130 4.130 12 C -0.134 4.134 13 C -0.017 4.017 14 C -0.578 4.578 15 H 0.082 0.918 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.182 1.182 20 H -0.203 1.203 21 H -0.205 1.205 22 C -0.018 4.018 23 C -0.185 4.185 24 C -0.099 4.099 25 C -0.187 4.187 26 C -0.070 4.070 27 N -0.208 5.208 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.126 0.874 32 H 0.143 0.857 33 H 0.282 0.718 34 H 0.248 0.752 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.006 0.994 42 H 0.003 0.997 43 H 0.072 0.928 44 H 0.166 0.834 45 H 0.181 0.819 46 H 0.181 0.819 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.199 -5.126 33.141 33.688 hybrid contribution 0.922 -0.978 -0.947 1.644 sum 4.121 -6.104 32.195 33.026 Atomic orbital electron populations 1.22182 0.91150 1.04016 1.03944 1.18782 0.94736 0.88947 0.82023 1.21689 0.87890 0.99251 1.06643 1.23259 0.91656 0.80805 0.70488 1.90607 1.70792 1.33776 1.46886 1.84504 1.28226 1.35727 1.85149 1.46024 1.53249 1.32492 1.03838 1.21007 0.79227 0.84091 0.85131 1.90638 1.39078 1.27773 1.87170 1.21659 1.03139 1.01567 0.90589 1.21213 1.00215 0.98546 0.93009 1.21453 0.99775 0.99008 0.93177 1.19049 0.94651 0.94616 0.93434 1.21774 1.31114 1.12767 0.92184 0.91774 1.26086 0.95382 0.95875 1.03086 1.70134 1.38258 1.24977 1.24363 0.85340 0.78222 0.78681 0.78434 1.18240 1.20350 1.20500 1.20734 0.95020 0.91923 0.94162 1.22074 1.01719 0.94622 1.00047 1.21970 0.93899 1.01773 0.92237 1.22501 0.99445 0.95168 1.01544 1.23113 0.96309 0.93870 0.93722 1.67246 1.09245 1.41258 1.03013 0.90343 0.90236 0.91057 0.87435 0.85654 0.71770 0.75176 0.87817 0.86306 0.93078 0.93950 0.92674 0.92056 0.99409 0.99745 0.92845 0.83389 0.81878 0.81940 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.26 71.98 0.59 -2.24 16 2 C 0.24 4.83 0.45 2.86 0.00 4.83 16 3 C -0.12 -2.62 4.20 29.85 0.13 -2.49 16 4 C 0.49 12.00 7.18 71.24 0.51 12.51 16 5 O -0.53 -14.24 14.42 21.98 0.32 -13.92 16 6 O -0.52 -10.88 13.42 -51.41 -0.69 -11.57 16 7 N -0.70 -14.69 3.44 -426.33 -1.47 -16.15 16 8 C 0.52 13.87 7.25 87.65 0.64 14.51 16 9 O -0.57 -19.02 12.25 -3.04 -0.04 -19.06 16 10 C -0.13 -3.38 5.70 29.85 0.17 -3.21 16 11 C -0.09 -3.33 4.50 30.59 0.14 -3.19 16 12 C -0.10 -4.03 5.15 30.60 0.16 -3.87 16 13 C 0.02 1.09 4.97 29.85 0.15 1.24 16 14 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 15 H 0.06 3.55 7.74 -2.92 -0.02 3.53 16 16 C -0.01 -0.43 5.46 84.65 0.46 0.04 16 17 N -0.94 -59.22 13.29 21.45 0.28 -58.94 16 18 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 19 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C 0.12 2.14 4.64 42.55 0.20 2.33 16 23 C -0.16 -2.19 8.73 22.36 0.20 -1.99 16 24 C -0.07 -0.71 10.18 22.47 0.23 -0.48 16 25 C -0.17 -1.60 10.11 22.36 0.23 -1.37 16 26 C 0.09 1.19 11.18 84.67 0.95 2.14 16 27 N -0.50 -9.41 7.69 -183.89 -1.41 -10.82 16 28 H 0.08 1.20 7.68 -2.39 -0.02 1.19 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.68 6.16 -2.38 -0.01 1.66 16 31 H 0.11 2.83 6.33 -2.39 -0.02 2.81 16 32 H 0.13 2.48 7.80 -2.39 -0.02 2.46 16 33 H 0.42 5.33 9.10 -74.06 -0.67 4.65 16 34 H 0.41 7.37 8.04 -92.71 -0.75 6.62 16 35 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 36 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.05 1.97 8.10 -2.39 -0.02 1.95 16 38 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H 0.26 15.51 8.31 -92.72 -0.77 14.74 16 44 H 0.15 1.50 7.87 -2.91 -0.02 1.48 16 45 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 46 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 47 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -79.75 388.82 3.57 -76.18 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -0.43 Total: 19.71 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: 4.97 Total: -12.70 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.59 Total: -85.91 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -0.41 Total: -44.54 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -79.75 3.57 -76.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604079725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.142 kcal (2) G-P(sol) polarization free energy of solvation -79.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds