Wall clock time and date at job start Tue Mar 31 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 H 1.09009 * 109.46953 * 54.45714 * 3 2 1 5 5 C 1.50699 * 109.47292 * 174.45411 * 3 2 1 6 6 C 1.38240 * 119.99641 * 88.73473 * 5 3 2 7 7 C 1.38228 * 119.99703 * 179.78855 * 6 5 3 8 8 C 1.38239 * 120.00425 * 0.44388 * 7 6 5 9 9 C 1.38234 * 119.99544 * 359.81453 * 8 7 6 10 10 C 1.38231 * 120.00196 * 359.97310 * 9 8 7 11 11 N 1.46896 * 109.47042 * 294.46146 * 3 2 1 12 12 C 1.46895 * 111.00291 * 90.41173 * 11 3 2 13 13 C 1.50699 * 109.47644 * 78.51483 * 12 11 3 14 14 O 1.20833 * 119.99594 * 5.51527 * 13 12 11 15 15 O 1.34226 * 120.00345 * 185.51199 * 13 12 11 16 16 C 1.46896 * 110.99841 * 326.44869 * 11 3 2 17 17 C 1.50706 * 109.47092 * 197.93083 * 16 11 3 18 18 O 1.21277 * 119.99993 * 0.02562 * 17 16 11 19 19 N 1.34776 * 119.99494 * 180.02562 * 17 16 11 20 20 C 1.46508 * 119.99704 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47161 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00037 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99828 * 179.97438 * 21 20 19 24 24 N 1.31521 * 120.00223 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47084 * 89.99850 * 25 23 21 27 27 H 1.48501 * 109.46958 * 210.00178 * 25 23 21 28 28 H 1.48499 * 109.46851 * 330.00047 * 25 23 21 29 29 H 1.08998 * 109.47149 * 189.92309 * 1 2 3 30 30 H 1.08997 * 109.46476 * 69.92121 * 1 2 3 31 31 H 1.08996 * 109.46886 * 309.92524 * 1 2 3 32 32 H 1.09005 * 109.46762 * 120.00133 * 2 1 3 33 33 H 1.08995 * 109.47007 * 239.99994 * 2 1 3 34 34 H 1.08005 * 119.99869 * 0.02562 * 6 5 3 35 35 H 1.08001 * 120.00129 * 180.27542 * 7 6 5 36 36 H 1.07993 * 119.99843 * 179.83195 * 8 7 6 37 37 H 1.08002 * 120.00076 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.00331 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.46903 * 198.51513 * 12 11 3 40 40 H 1.09002 * 109.47095 * 318.50930 * 12 11 3 41 41 H 0.96701 * 117.00350 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47524 * 317.93607 * 16 11 3 43 43 H 1.09001 * 109.46666 * 77.94018 * 16 11 3 44 44 H 0.96996 * 120.00342 * 0.02562 * 19 17 16 45 45 H 1.09007 * 109.46926 * 300.00226 * 20 19 17 46 46 H 1.09000 * 109.46893 * 59.99790 * 20 19 17 47 47 H 0.96999 * 120.00149 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9842 0.8363 5 6 3.5408 1.4447 0.1373 6 6 4.3381 1.3807 -0.9902 7 6 5.7146 1.3871 -0.8645 8 6 6.2941 1.4483 0.3891 9 6 5.4968 1.5069 1.5168 10 6 4.1202 1.5049 1.3909 11 7 1.6627 2.0953 -1.2606 12 6 0.3549 2.7537 -1.1416 13 6 0.5161 4.0634 -0.4138 14 8 1.6194 4.4601 -0.1213 15 8 -0.5657 4.7892 -0.0905 16 6 1.6699 1.1359 -2.3730 17 6 1.7181 1.8833 -3.6807 18 8 1.7443 3.0958 -3.6856 19 7 1.7320 1.2042 -4.8448 20 6 1.7794 1.9308 -6.1162 21 6 1.7854 0.9466 -7.2573 22 1 1.7572 -0.1141 -7.0558 23 6 1.8269 1.4002 -8.5587 24 7 1.8607 2.6919 -8.8041 25 14 1.8337 0.1802 -9.9733 26 1 0.4361 -0.1117 -10.3818 27 1 2.5748 0.7592 -11.1226 28 1 2.4955 -1.0765 -9.5399 29 1 -0.3633 -1.0123 0.1771 30 1 -0.3632 0.3528 -0.9652 31 1 -0.3633 0.6595 0.7881 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8854 1.3296 -1.9695 35 1 6.3376 1.3417 -1.7456 36 1 7.3695 1.4506 0.4873 37 1 5.9494 1.5551 2.4962 38 1 3.4973 1.5510 2.2720 39 1 -0.0507 2.9383 -2.1364 40 1 -0.3265 2.1102 -0.5852 41 1 -0.4121 5.6224 0.3756 42 1 2.5446 0.4907 -2.2908 43 1 0.7656 0.5286 -2.3348 44 1 1.7107 0.2345 -4.8410 45 1 0.9050 2.5766 -6.1984 46 1 2.6841 2.5376 -6.1543 47 1 1.8903 3.0110 -9.7197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605129569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:41 Heat of formation + Delta-G solvation = -81.389167 kcal Electronic energy + Delta-G solvation = -29658.249724 eV Core-core repulsion = 25613.692602 eV Total energy + Delta-G solvation = -4044.557122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78718 -39.60552 -38.71733 -37.44028 -35.88333 -34.19120 -32.75102 -32.34584 -31.32924 -30.88132 -29.46092 -27.72510 -26.71283 -24.43376 -22.78946 -22.44900 -22.09267 -21.29967 -20.22712 -19.49076 -18.05074 -17.46463 -17.15419 -16.67604 -16.10154 -15.85445 -15.42876 -15.27625 -15.11376 -14.80805 -14.53608 -14.40315 -14.07592 -13.70514 -13.59091 -13.31803 -13.10495 -12.89764 -12.62375 -12.48091 -12.33782 -12.15878 -12.03208 -11.94999 -11.62238 -11.49126 -11.32185 -11.06174 -10.97162 -10.89652 -10.86008 -10.68663 -10.34601 -10.31981 -9.40668 -9.08335 -8.81887 -8.74219 -8.64188 -8.28416 -7.88234 -6.17395 -4.24555 1.42065 1.50611 2.39419 2.85158 3.23177 3.29545 3.31768 3.33752 3.61792 3.88557 4.18771 4.36503 4.51145 4.67807 4.74272 4.94572 4.95685 5.05044 5.06578 5.12333 5.15547 5.18790 5.27955 5.31773 5.37785 5.41875 5.46526 5.54340 5.62178 5.67674 5.72629 5.78033 5.94142 6.05080 6.13391 6.50188 6.58882 6.59191 6.62013 6.74081 6.93433 7.08797 7.30845 7.42659 7.51360 7.65822 7.96283 8.06286 8.61276 8.77830 9.10004 9.42286 10.92688 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.003289 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.295474 B = 8511.754186 C = 9607.997612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.156 4.156 3 C 0.127 3.873 4 H 0.086 0.914 5 C -0.061 4.061 6 C -0.098 4.098 7 C -0.119 4.119 8 C -0.126 4.126 9 C -0.124 4.124 10 C -0.116 4.116 11 N -0.494 5.494 12 C 0.059 3.941 13 C 0.477 3.523 14 O -0.487 6.487 15 O -0.525 6.525 16 C 0.023 3.977 17 C 0.492 3.508 18 O -0.532 6.532 19 N -0.714 5.714 20 C 0.252 3.748 21 C -0.543 4.543 22 H 0.063 0.937 23 C 0.064 3.936 24 N -0.885 5.885 25 Si 0.903 3.097 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.273 1.273 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.407 0.593 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.389 0.611 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 -6.115 22.344 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.195 4.195 3 C 0.019 3.981 4 H 0.104 0.896 5 C -0.061 4.061 6 C -0.116 4.116 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.142 4.142 10 C -0.135 4.135 11 N -0.218 5.218 12 C -0.070 4.070 13 C 0.317 3.683 14 O -0.372 6.372 15 O -0.338 6.338 16 C -0.107 4.107 17 C 0.275 3.725 18 O -0.409 6.409 19 N -0.364 5.364 20 C 0.131 3.869 21 C -0.582 4.582 22 H 0.081 0.919 23 C -0.140 4.140 24 N -0.522 5.522 25 Si 0.730 3.270 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.197 1.197 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.147 0.853 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.141 0.859 40 H 0.103 0.897 41 H 0.265 0.735 42 H 0.129 0.871 43 H 0.089 0.911 44 H 0.221 0.779 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.474 -4.964 21.922 22.482 hybrid contribution -0.381 -0.935 -0.443 1.103 sum -0.855 -5.899 21.479 22.290 Atomic orbital electron populations 1.22098 0.95513 1.02444 1.02023 1.22346 0.96218 0.97056 1.03850 1.20713 0.92478 0.93132 0.91791 0.89576 1.19583 0.94154 0.99135 0.93252 1.21258 0.93340 0.98017 0.98985 1.21204 0.95147 0.99936 0.97430 1.21103 0.99539 1.00977 0.92798 1.21005 0.93637 1.01187 0.98360 1.20855 0.94901 1.01240 0.96493 1.61102 1.27735 1.30030 1.02899 1.21755 0.91826 0.90721 1.02686 1.23304 0.81904 0.86460 0.76674 1.90738 1.26771 1.69992 1.49659 1.84505 1.39413 1.37394 1.72456 1.22444 1.03568 0.94403 0.90260 1.20341 0.78435 0.88553 0.85135 1.90701 1.49295 1.13641 1.87306 1.46458 1.72796 1.10096 1.07054 1.19083 0.97695 0.92393 0.77700 1.21218 1.53202 0.92969 0.90787 0.91917 1.24950 0.94713 0.95388 0.98940 1.69977 1.48774 1.12768 1.20695 0.86429 0.78164 0.80897 0.81499 1.20489 1.21013 1.19740 0.91912 0.92035 0.92374 0.90744 0.90392 0.85273 0.86151 0.86516 0.86501 0.86668 0.85931 0.89735 0.73457 0.87089 0.91067 0.77864 0.95631 0.95529 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.17 37.16 0.30 -0.89 16 2 C -0.16 -1.32 4.87 -26.73 -0.13 -1.45 16 3 C 0.13 1.43 1.76 -68.87 -0.12 1.31 16 4 H 0.09 0.97 7.16 -51.92 -0.37 0.60 16 5 C -0.06 -0.77 5.02 -104.62 -0.52 -1.29 16 6 C -0.10 -1.36 8.81 -39.58 -0.35 -1.71 16 7 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 8 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 9 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 10 C -0.12 -1.33 9.70 -39.59 -0.38 -1.72 16 11 N -0.49 -6.72 3.00 -230.92 -0.69 -7.41 16 12 C 0.06 0.75 4.45 -4.98 -0.02 0.73 16 13 C 0.48 6.71 7.81 36.01 0.28 6.99 16 14 O -0.49 -8.54 16.81 -18.76 -0.32 -8.86 16 15 O -0.53 -5.74 13.42 -39.25 -0.53 -6.27 16 16 C 0.02 0.31 2.86 -4.98 -0.01 0.29 16 17 C 0.49 9.24 7.35 -10.98 -0.08 9.16 16 18 O -0.53 -12.46 15.28 5.56 0.08 -12.38 16 19 N -0.71 -14.21 5.55 -61.46 -0.34 -14.55 16 20 C 0.25 6.52 5.43 -5.19 -0.03 6.49 16 21 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 22 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 23 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 24 N -0.88 -25.90 13.29 55.43 0.74 -25.16 16 25 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 4.76 -51.93 -0.25 0.23 16 31 H 0.06 0.40 7.60 -51.93 -0.39 0.00 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.66 5.87 -51.93 -0.31 0.36 16 34 H 0.13 1.91 4.84 -52.48 -0.25 1.66 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 37 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.12 1.78 6.64 -51.93 -0.34 1.44 16 40 H 0.09 0.81 4.71 -51.93 -0.24 0.57 16 41 H 0.41 2.77 9.10 45.56 0.41 3.18 16 42 H 0.11 1.31 4.62 -51.93 -0.24 1.07 16 43 H 0.07 0.75 5.56 -51.93 -0.29 0.46 16 44 H 0.39 6.50 8.32 -40.82 -0.34 6.16 16 45 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -35.57 379.20 -8.57 -44.14 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -5.53 Total: 9.92 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.68 Total: -0.72 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.30 Total: -47.12 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.76 Total: -27.50 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.57 -8.57 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605129569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.247 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds