Wall clock time and date at job start Tue Mar 31 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 H 1.09009 * 109.46953 * 54.45714 * 3 2 1 5 5 C 1.50699 * 109.47292 * 174.45411 * 3 2 1 6 6 C 1.38240 * 119.99641 * 88.73473 * 5 3 2 7 7 C 1.38228 * 119.99703 * 179.78855 * 6 5 3 8 8 C 1.38239 * 120.00425 * 0.44388 * 7 6 5 9 9 C 1.38234 * 119.99544 * 359.81453 * 8 7 6 10 10 C 1.38231 * 120.00196 * 359.97310 * 9 8 7 11 11 N 1.46896 * 109.47042 * 294.46146 * 3 2 1 12 12 C 1.46895 * 111.00291 * 90.41173 * 11 3 2 13 13 C 1.50699 * 109.47644 * 78.51483 * 12 11 3 14 14 O 1.20833 * 119.99594 * 5.51527 * 13 12 11 15 15 O 1.34226 * 120.00345 * 185.51199 * 13 12 11 16 16 C 1.46896 * 110.99841 * 326.44869 * 11 3 2 17 17 C 1.50706 * 109.47092 * 197.93083 * 16 11 3 18 18 O 1.21277 * 119.99993 * 0.02562 * 17 16 11 19 19 N 1.34776 * 119.99494 * 180.02562 * 17 16 11 20 20 C 1.46508 * 119.99704 * 180.02562 * 19 17 16 21 21 C 1.50699 * 109.47161 * 180.02562 * 20 19 17 22 22 H 1.08000 * 120.00037 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99828 * 179.97438 * 21 20 19 24 24 N 1.31521 * 120.00223 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00043 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47084 * 89.99850 * 25 23 21 27 27 H 1.48501 * 109.46958 * 210.00178 * 25 23 21 28 28 H 1.48499 * 109.46851 * 330.00047 * 25 23 21 29 29 H 1.08998 * 109.47149 * 189.92309 * 1 2 3 30 30 H 1.08997 * 109.46476 * 69.92121 * 1 2 3 31 31 H 1.08996 * 109.46886 * 309.92524 * 1 2 3 32 32 H 1.09005 * 109.46762 * 120.00133 * 2 1 3 33 33 H 1.08995 * 109.47007 * 239.99994 * 2 1 3 34 34 H 1.08005 * 119.99869 * 0.02562 * 6 5 3 35 35 H 1.08001 * 120.00129 * 180.27542 * 7 6 5 36 36 H 1.07993 * 119.99843 * 179.83195 * 8 7 6 37 37 H 1.08002 * 120.00076 * 180.02562 * 9 8 7 38 38 H 1.08001 * 120.00331 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.46903 * 198.51513 * 12 11 3 40 40 H 1.09002 * 109.47095 * 318.50930 * 12 11 3 41 41 H 0.96701 * 117.00350 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47524 * 317.93607 * 16 11 3 43 43 H 1.09001 * 109.46666 * 77.94018 * 16 11 3 44 44 H 0.96996 * 120.00342 * 0.02562 * 19 17 16 45 45 H 1.09007 * 109.46926 * 300.00226 * 20 19 17 46 46 H 1.09000 * 109.46893 * 59.99790 * 20 19 17 47 47 H 0.96999 * 120.00149 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5980 1.9842 0.8363 5 6 3.5408 1.4447 0.1373 6 6 4.3381 1.3807 -0.9902 7 6 5.7146 1.3871 -0.8645 8 6 6.2941 1.4483 0.3891 9 6 5.4968 1.5069 1.5168 10 6 4.1202 1.5049 1.3909 11 7 1.6627 2.0953 -1.2606 12 6 0.3549 2.7537 -1.1416 13 6 0.5161 4.0634 -0.4138 14 8 1.6194 4.4601 -0.1213 15 8 -0.5657 4.7892 -0.0905 16 6 1.6699 1.1359 -2.3730 17 6 1.7181 1.8833 -3.6807 18 8 1.7443 3.0958 -3.6856 19 7 1.7320 1.2042 -4.8448 20 6 1.7794 1.9308 -6.1162 21 6 1.7854 0.9466 -7.2573 22 1 1.7572 -0.1141 -7.0558 23 6 1.8269 1.4002 -8.5587 24 7 1.8607 2.6919 -8.8041 25 14 1.8337 0.1802 -9.9733 26 1 0.4361 -0.1117 -10.3818 27 1 2.5748 0.7592 -11.1226 28 1 2.4955 -1.0765 -9.5399 29 1 -0.3633 -1.0123 0.1771 30 1 -0.3632 0.3528 -0.9652 31 1 -0.3633 0.6595 0.7881 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.8854 1.3296 -1.9695 35 1 6.3376 1.3417 -1.7456 36 1 7.3695 1.4506 0.4873 37 1 5.9494 1.5551 2.4962 38 1 3.4973 1.5510 2.2720 39 1 -0.0507 2.9383 -2.1364 40 1 -0.3265 2.1102 -0.5852 41 1 -0.4121 5.6224 0.3756 42 1 2.5446 0.4907 -2.2908 43 1 0.7656 0.5286 -2.3348 44 1 1.7107 0.2345 -4.8410 45 1 0.9050 2.5766 -6.1984 46 1 2.6841 2.5376 -6.1543 47 1 1.8903 3.0110 -9.7197 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605129569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:41 Heat of formation + Delta-G solvation = -107.275147 kcal Electronic energy + Delta-G solvation = -29659.372225 eV Core-core repulsion = 25613.692602 eV Total energy + Delta-G solvation = -4045.679623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83617 -40.69256 -40.05299 -38.51565 -36.94144 -36.08279 -34.32278 -33.65954 -32.10398 -31.79915 -30.76760 -29.14212 -28.05514 -25.58204 -24.37283 -23.47281 -23.02275 -22.27910 -21.57464 -20.70921 -19.22871 -18.90635 -18.12450 -17.88696 -17.57119 -16.99389 -16.87967 -16.54560 -16.31345 -16.01759 -15.94177 -15.48049 -15.14865 -15.03632 -14.53632 -14.28924 -14.25488 -14.02692 -13.90276 -13.87106 -13.74562 -13.31972 -13.10784 -12.93271 -12.86433 -12.75458 -12.64926 -12.41563 -12.28188 -12.21670 -11.75363 -11.74268 -11.66928 -11.47017 -11.43615 -10.78455 -10.66855 -9.78400 -9.74506 -9.54643 -9.24420 -8.27531 -6.43972 0.52006 0.58228 1.29605 1.43992 1.46282 1.57420 1.80363 1.89128 2.31127 2.49119 2.90933 3.07517 3.08197 3.67803 3.80488 3.95699 4.02018 4.05717 4.16568 4.18903 4.23885 4.25302 4.29333 4.40818 4.47170 4.51824 4.56946 4.73857 4.81843 4.84327 5.08114 5.13800 5.14227 5.18229 5.24077 5.27119 5.37125 5.51167 5.59632 5.65206 5.68876 5.68993 5.70693 5.82636 5.87593 6.03081 6.20038 6.67754 6.97422 7.08772 7.25860 7.56174 8.84561 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.003289 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.295474 B = 8511.754186 C = 9607.997612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.150 4.150 3 C 0.132 3.868 4 H 0.088 0.912 5 C -0.071 4.071 6 C -0.123 4.123 7 C -0.138 4.138 8 C -0.132 4.132 9 C -0.124 4.124 10 C -0.123 4.123 11 N -0.520 5.520 12 C 0.059 3.941 13 C 0.479 3.521 14 O -0.529 6.529 15 O -0.516 6.516 16 C 0.043 3.957 17 C 0.491 3.509 18 O -0.583 6.583 19 N -0.708 5.708 20 C 0.270 3.730 21 C -0.553 4.553 22 H 0.086 0.914 23 C 0.003 3.997 24 N -0.932 5.932 25 Si 0.983 3.017 26 H -0.270 1.270 27 H -0.287 1.287 28 H -0.254 1.254 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.138 0.862 37 H 0.145 0.855 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.122 0.878 41 H 0.425 0.575 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.408 0.592 45 H -0.013 1.013 46 H -0.018 1.018 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 -8.956 24.115 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.025 3.975 4 H 0.106 0.894 5 C -0.072 4.072 6 C -0.141 4.141 7 C -0.156 4.156 8 C -0.150 4.150 9 C -0.142 4.142 10 C -0.141 4.141 11 N -0.245 5.245 12 C -0.070 4.070 13 C 0.321 3.679 14 O -0.417 6.417 15 O -0.330 6.330 16 C -0.087 4.087 17 C 0.277 3.723 18 O -0.463 6.463 19 N -0.359 5.359 20 C 0.147 3.853 21 C -0.591 4.591 22 H 0.104 0.896 23 C -0.196 4.196 24 N -0.571 5.571 25 Si 0.806 3.194 26 H -0.195 1.195 27 H -0.212 1.212 28 H -0.178 1.178 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.139 0.861 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.287 0.713 42 H 0.146 0.854 43 H 0.125 0.875 44 H 0.244 0.756 45 H 0.005 0.995 46 H 0.000 1.000 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.152 -7.845 23.743 25.032 hybrid contribution -0.177 0.069 -0.889 0.909 sum -1.329 -7.776 22.854 24.177 Atomic orbital electron populations 1.22095 0.94370 1.03585 1.01989 1.22298 0.97088 0.94901 1.04521 1.20744 0.91671 0.94743 0.90363 0.89391 1.19826 0.94978 0.98995 0.93387 1.21246 0.94036 1.00001 0.98800 1.21375 0.95089 1.00717 0.98437 1.21386 1.00837 1.00454 0.92353 1.21388 0.93591 0.99796 0.99415 1.21172 0.95581 1.00640 0.96743 1.60917 1.28581 1.31005 1.03986 1.21818 0.92250 0.90949 1.01944 1.23588 0.81680 0.86779 0.75876 1.90721 1.28340 1.71044 1.51617 1.84465 1.38016 1.38279 1.72223 1.22325 1.05993 0.93667 0.86692 1.21388 0.76168 0.88186 0.86517 1.90676 1.51168 1.16298 1.88157 1.46159 1.73176 1.10852 1.05728 1.18477 0.93830 0.92168 0.80837 1.21630 1.52531 0.93967 0.90971 0.89639 1.26061 0.93954 0.97310 1.02312 1.70149 1.50107 1.15391 1.21453 0.85180 0.78535 0.78513 0.77133 1.19537 1.21240 1.17804 0.90431 0.92499 0.91695 0.89495 0.90339 0.87000 0.86130 0.84454 0.83768 0.84529 0.87953 0.86067 0.71350 0.85377 0.87481 0.75620 0.99487 0.99998 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.17 71.98 0.59 -1.21 16 2 C -0.15 -2.09 4.87 30.60 0.15 -1.94 16 3 C 0.13 2.76 1.76 44.17 0.08 2.84 16 4 H 0.09 1.80 7.16 -2.38 -0.02 1.79 16 5 C -0.07 -1.74 5.02 -19.87 -0.10 -1.84 16 6 C -0.12 -3.44 8.81 22.27 0.20 -3.25 16 7 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16 8 C -0.13 -2.88 10.05 22.27 0.22 -2.66 16 9 C -0.12 -2.46 10.05 22.27 0.22 -2.23 16 10 C -0.12 -2.59 9.70 22.27 0.22 -2.37 16 11 N -0.52 -13.88 3.00 -884.48 -2.65 -16.53 16 12 C 0.06 1.46 4.45 85.56 0.38 1.85 16 13 C 0.48 13.35 7.81 71.24 0.56 13.91 16 14 O -0.53 -18.82 16.81 21.94 0.37 -18.46 16 15 O -0.52 -10.75 13.42 -51.38 -0.69 -11.44 16 16 C 0.04 1.09 2.86 85.56 0.24 1.33 16 17 C 0.49 18.98 7.35 87.66 0.64 19.62 16 18 O -0.58 -28.86 15.28 -3.02 -0.05 -28.91 16 19 N -0.71 -28.82 5.55 -466.76 -2.59 -31.41 16 20 C 0.27 14.69 5.43 85.63 0.46 15.15 16 21 C -0.55 -29.69 9.28 25.60 0.24 -29.45 16 22 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 23 C 0.00 0.17 5.46 84.65 0.46 0.63 16 24 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 25 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.29 -12.26 7.11 99.48 0.71 -11.56 16 28 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.68 4.76 -2.39 -0.01 0.67 16 31 H 0.06 0.65 7.60 -2.39 -0.02 0.63 16 32 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.08 1.10 5.87 -2.39 -0.01 1.09 16 34 H 0.11 3.43 4.84 -2.91 -0.01 3.41 16 35 H 0.12 2.96 8.06 -2.91 -0.02 2.93 16 36 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 39 H 0.10 3.01 6.64 -2.39 -0.02 3.00 16 40 H 0.12 2.05 4.71 -2.39 -0.01 2.03 16 41 H 0.43 5.33 9.10 -74.06 -0.67 4.65 16 42 H 0.13 2.88 4.62 -2.39 -0.01 2.87 16 43 H 0.11 1.98 5.56 -2.39 -0.01 1.96 16 44 H 0.41 13.34 8.32 -92.71 -0.77 12.57 16 45 H -0.01 -0.79 8.14 -2.38 -0.02 -0.80 16 46 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 47 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -81.98 379.20 1.08 -80.90 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.42 Total: 30.95 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 4.79 Total: 7.00 kcal Atomic # 7 Polarization: -99.14 SS G_CDS: -4.96 Total: -104.10 kcal Atomic # 8 Polarization: -58.43 SS G_CDS: -0.37 Total: -58.80 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -81.98 1.08 -80.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605129569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.376 kcal (2) G-P(sol) polarization free energy of solvation -81.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds