Wall clock time and date at job start Tue Mar 31 2020 17:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00181 * 2 1 4 4 O 1.20824 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00042 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47420 * 181.25033 * 5 3 2 7 7 C 1.53006 * 109.47064 * 294.85040 * 6 5 3 8 8 N 1.46497 * 109.47387 * 174.84849 * 6 5 3 9 9 C 1.34780 * 119.99728 * 185.08203 * 8 6 5 10 10 O 1.21284 * 120.00311 * 354.98209 * 9 8 6 11 11 C 1.50706 * 119.99534 * 174.71273 * 9 8 6 12 12 C 1.53001 * 109.46817 * 180.26892 * 11 9 8 13 13 C 1.53000 * 109.47153 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47203 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99798 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99981 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47119 * 59.99496 * 18 16 14 20 20 H 1.48496 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46947 * 299.99722 * 18 16 14 22 22 C 1.50703 * 109.46785 * 54.84243 * 6 5 3 23 23 C 1.38673 * 120.42149 * 235.03027 * 22 6 5 24 24 C 1.38633 * 118.41910 * 179.78672 * 23 22 6 25 25 C 1.38230 * 119.15912 * 0.51570 * 24 23 22 26 26 N 1.31852 * 120.76623 * 359.72608 * 25 24 23 27 27 C 1.31889 * 121.72543 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47207 * 59.98994 * 1 2 3 29 29 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46723 * 299.99127 * 1 2 3 31 31 H 1.09003 * 109.46823 * 61.25432 * 5 3 2 32 32 H 1.08996 * 109.47290 * 301.25515 * 5 3 2 33 33 H 1.08997 * 109.47024 * 299.99819 * 7 6 5 34 34 H 1.09000 * 109.47173 * 59.99700 * 7 6 5 35 35 H 1.08995 * 109.46834 * 179.97438 * 7 6 5 36 36 H 0.96997 * 119.99902 * 5.07560 * 8 6 5 37 37 H 1.08991 * 109.47372 * 300.27273 * 11 9 8 38 38 H 1.08996 * 109.46691 * 60.27559 * 11 9 8 39 39 H 1.08996 * 109.47741 * 300.00736 * 12 11 9 40 40 H 1.09004 * 109.46723 * 60.00231 * 12 11 9 41 41 H 1.09001 * 109.46652 * 300.00486 * 13 12 11 42 42 H 1.08996 * 109.46880 * 59.99879 * 13 12 11 43 43 H 0.97000 * 120.00188 * 179.97438 * 17 16 14 44 44 H 1.07998 * 120.78812 * 0.03423 * 23 22 6 45 45 H 1.07993 * 120.41902 * 180.22492 * 24 23 22 46 46 H 1.07998 * 119.61656 * 179.75094 * 25 24 23 47 47 H 1.07995 * 119.61433 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7416 0.0310 7 6 3.5616 3.4312 -1.2624 8 7 5.4581 2.8171 0.1545 9 6 6.0606 4.0133 0.3051 10 8 5.4068 5.0332 0.2473 11 6 7.5457 4.0832 0.5514 12 6 7.9711 5.5462 0.6915 13 6 9.4787 5.6172 0.9421 14 6 9.8976 7.0582 1.0808 15 1 9.1621 7.8446 0.9979 16 6 11.2200 7.3725 1.3123 17 7 12.1156 6.4148 1.4127 18 14 11.7391 9.1586 1.4848 19 1 11.0182 9.7754 2.6273 20 1 13.2024 9.2275 1.7280 21 1 11.4090 9.8927 0.2368 22 6 3.3600 3.4296 1.2091 23 6 2.6016 4.5760 1.0257 24 6 2.0278 5.1724 2.1378 25 6 2.2382 4.6147 3.3850 26 7 2.9696 3.5263 3.5225 27 6 3.5264 2.9295 2.4865 28 1 -0.3633 0.5140 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 3.9546 0.8004 -0.9019 32 1 3.9574 0.7612 0.8776 33 1 4.0246 2.9337 -2.1145 34 1 2.4769 3.3751 -1.3543 35 1 3.8703 4.4763 -1.2397 36 1 5.9897 2.0062 0.1279 37 1 7.7878 3.5451 1.4678 38 1 8.0746 3.6297 -0.2868 39 1 7.7289 6.0844 -0.2249 40 1 7.4420 5.9997 1.5297 41 1 9.7203 5.0791 1.8588 42 1 10.0081 5.1635 0.1043 43 1 13.0460 6.6359 1.5752 44 1 2.4581 4.9919 0.0394 45 1 1.4280 6.0642 2.0317 46 1 1.7981 5.0756 4.2569 47 1 4.1186 2.0392 2.6382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617931602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:43 Heat of formation + Delta-G solvation = -91.528249 kcal Electronic energy + Delta-G solvation = -29300.318759 eV Core-core repulsion = 25255.321973 eV Total energy + Delta-G solvation = -4044.996786 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50816 -40.25104 -39.23492 -37.29511 -36.07581 -34.14958 -32.75117 -32.08098 -31.70063 -30.55670 -29.13079 -27.72614 -27.50067 -24.52794 -23.70282 -23.18226 -22.17890 -20.85269 -19.90186 -19.74040 -18.09877 -17.54282 -17.12125 -16.88227 -16.71768 -16.11037 -16.02468 -15.80481 -15.31013 -14.83609 -14.42334 -14.37469 -13.94081 -13.91135 -13.59685 -13.42438 -13.34460 -13.13696 -12.85414 -12.47878 -12.25169 -12.15312 -12.05023 -11.89388 -11.78973 -11.38234 -11.23203 -11.16610 -10.78855 -10.77017 -10.61067 -10.53762 -9.81813 -9.68111 -9.56334 -9.49130 -9.28152 -9.10268 -9.02015 -8.81750 -8.30557 -5.96426 -3.97742 1.12169 1.44181 1.82406 2.16503 2.89739 3.26929 3.37432 3.40771 3.44768 3.82441 4.15457 4.22838 4.44350 4.50345 4.52634 4.66360 4.70494 4.78652 4.92689 4.97202 4.98218 5.12908 5.13085 5.16795 5.35872 5.39574 5.50709 5.62527 5.68129 5.71058 5.72381 5.76058 5.96170 6.14880 6.23770 6.24487 6.34067 6.43001 6.73524 6.74366 6.93834 7.17181 7.35508 7.53850 7.71850 7.84914 8.00429 8.04167 8.43271 8.48341 9.09007 9.66035 11.15035 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.002516 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.479072 B =11126.759419 C =11800.999742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.487 6.487 5 C -0.119 4.119 6 C 0.236 3.764 7 C -0.174 4.174 8 N -0.735 5.735 9 C 0.518 3.482 10 O -0.522 6.522 11 C -0.138 4.138 12 C -0.093 4.093 13 C 0.021 3.979 14 C -0.518 4.518 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.122 4.122 23 C -0.015 4.015 24 C -0.177 4.177 25 C 0.094 3.906 26 N -0.488 5.488 27 C 0.098 3.902 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.401 0.599 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.151 0.849 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.785 -16.507 -3.993 29.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.277 6.277 3 C 0.307 3.693 4 O -0.373 6.373 5 C -0.157 4.157 6 C 0.149 3.851 7 C -0.232 4.232 8 N -0.389 5.389 9 C 0.306 3.694 10 O -0.396 6.396 11 C -0.178 4.178 12 C -0.131 4.131 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.125 4.125 23 C -0.041 4.041 24 C -0.197 4.197 25 C -0.063 4.063 26 N -0.197 5.197 27 C -0.059 4.059 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.133 0.867 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.236 0.764 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.168 0.832 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.173 -15.820 -3.148 29.060 hybrid contribution 0.376 0.896 -0.716 1.207 sum -23.796 -14.923 -3.863 28.353 Atomic orbital electron populations 1.23268 0.75999 1.03738 1.02669 1.86485 1.23661 1.33281 1.84268 1.23232 0.91613 0.81582 0.72916 1.90700 1.66912 1.35798 1.43894 1.21619 0.89213 0.97936 1.06973 1.18600 0.80881 0.91580 0.94065 1.22477 1.02721 1.03257 0.94723 1.46255 1.05386 1.09970 1.77323 1.21231 0.91048 0.82433 0.74711 1.90658 1.66416 1.34208 1.48339 1.21854 0.89756 1.02828 1.03315 1.21426 0.99539 0.90713 1.01449 1.19120 0.88607 0.97039 0.96832 1.21225 0.93168 0.92652 1.48575 0.92694 1.25015 0.96789 0.97224 0.95471 1.69947 1.02019 1.31813 1.49954 0.86658 0.77276 0.85399 0.78688 1.20239 1.21324 1.20238 1.20639 0.99387 0.97472 0.95037 1.21354 0.91331 0.92197 0.99225 1.22106 1.02108 1.01572 0.93890 1.22665 0.94774 0.92000 0.96818 1.67626 1.08659 1.09556 1.33817 1.22394 0.96777 0.98901 0.87843 0.91795 0.88045 0.91839 0.86270 0.86721 0.92304 0.90189 0.89661 0.76434 0.89359 0.89371 0.92742 0.92834 0.96657 0.96640 0.93019 0.84883 0.85141 0.83195 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -2.86 10.57 -39.26 -0.41 -3.28 16 3 C 0.46 4.15 7.38 36.00 0.27 4.41 16 4 O -0.49 -5.52 11.62 -18.75 -0.22 -5.74 16 5 C -0.12 -0.82 4.69 -27.89 -0.13 -0.95 16 6 C 0.24 2.37 0.63 -132.97 -0.08 2.29 16 7 C -0.17 -1.87 6.93 37.16 0.26 -1.61 16 8 N -0.73 -7.54 5.03 -48.68 -0.24 -7.78 16 9 C 0.52 7.70 7.24 -10.98 -0.08 7.62 16 10 O -0.52 -9.58 12.63 5.55 0.07 -9.51 16 11 C -0.14 -2.19 5.70 -27.88 -0.16 -2.35 16 12 C -0.09 -2.00 4.44 -26.73 -0.12 -2.12 16 13 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 15 H 0.05 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.12 -1.55 1.95 -104.48 -0.20 -1.75 16 23 C -0.01 -0.20 7.29 -39.28 -0.29 -0.49 16 24 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 25 C 0.09 1.23 11.18 -17.55 -0.20 1.03 16 26 N -0.49 -7.08 10.36 -13.25 -0.14 -7.21 16 27 C 0.10 1.29 10.33 -17.55 -0.18 1.10 16 28 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.12 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.11 0.58 7.36 -51.93 -0.38 0.20 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.86 5.56 -51.93 -0.29 0.57 16 35 H 0.08 1.15 5.55 -51.93 -0.29 0.86 16 36 H 0.40 2.74 8.48 -40.82 -0.35 2.39 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.13 1.75 6.06 -52.49 -0.32 1.43 16 45 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 46 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 47 H 0.14 1.54 7.39 -52.49 -0.39 1.15 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -36.54 384.36 -7.28 -43.82 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.04 Total: 0.80 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.80 Total: -7.61 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.35 Total: -41.45 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.56 Total: -18.52 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.54 -7.28 -43.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617931602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.711 kcal (2) G-P(sol) polarization free energy of solvation -36.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds