Wall clock time and date at job start Tue Mar 31 2020 17:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34229 * 117.00181 * 2 1 4 4 O 1.20824 * 119.99814 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00042 * 180.02562 * 3 2 1 6 6 C 1.52998 * 109.47420 * 181.25033 * 5 3 2 7 7 C 1.53006 * 109.47064 * 294.85040 * 6 5 3 8 8 N 1.46497 * 109.47387 * 174.84849 * 6 5 3 9 9 C 1.34780 * 119.99728 * 185.08203 * 8 6 5 10 10 O 1.21284 * 120.00311 * 354.98209 * 9 8 6 11 11 C 1.50706 * 119.99534 * 174.71273 * 9 8 6 12 12 C 1.53001 * 109.46817 * 180.26892 * 11 9 8 13 13 C 1.53000 * 109.47153 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47203 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99798 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99981 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00058 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99996 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47119 * 59.99496 * 18 16 14 20 20 H 1.48496 * 109.47071 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.46947 * 299.99722 * 18 16 14 22 22 C 1.50703 * 109.46785 * 54.84243 * 6 5 3 23 23 C 1.38673 * 120.42149 * 235.03027 * 22 6 5 24 24 C 1.38633 * 118.41910 * 179.78672 * 23 22 6 25 25 C 1.38230 * 119.15912 * 0.51570 * 24 23 22 26 26 N 1.31852 * 120.76623 * 359.72608 * 25 24 23 27 27 C 1.31889 * 121.72543 * 0.02562 * 26 25 24 28 28 H 1.08994 * 109.47207 * 59.98994 * 1 2 3 29 29 H 1.08997 * 109.47210 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46723 * 299.99127 * 1 2 3 31 31 H 1.09003 * 109.46823 * 61.25432 * 5 3 2 32 32 H 1.08996 * 109.47290 * 301.25515 * 5 3 2 33 33 H 1.08997 * 109.47024 * 299.99819 * 7 6 5 34 34 H 1.09000 * 109.47173 * 59.99700 * 7 6 5 35 35 H 1.08995 * 109.46834 * 179.97438 * 7 6 5 36 36 H 0.96997 * 119.99902 * 5.07560 * 8 6 5 37 37 H 1.08991 * 109.47372 * 300.27273 * 11 9 8 38 38 H 1.08996 * 109.46691 * 60.27559 * 11 9 8 39 39 H 1.08996 * 109.47741 * 300.00736 * 12 11 9 40 40 H 1.09004 * 109.46723 * 60.00231 * 12 11 9 41 41 H 1.09001 * 109.46652 * 300.00486 * 13 12 11 42 42 H 1.08996 * 109.46880 * 59.99879 * 13 12 11 43 43 H 0.97000 * 120.00188 * 179.97438 * 17 16 14 44 44 H 1.07998 * 120.78812 * 0.03423 * 23 22 6 45 45 H 1.07993 * 120.41902 * 180.22492 * 24 23 22 46 46 H 1.07998 * 119.61656 * 179.75094 * 25 24 23 47 47 H 1.07995 * 119.61433 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0003 2.7416 0.0310 7 6 3.5616 3.4312 -1.2624 8 7 5.4581 2.8171 0.1545 9 6 6.0606 4.0133 0.3051 10 8 5.4068 5.0332 0.2473 11 6 7.5457 4.0832 0.5514 12 6 7.9711 5.5462 0.6915 13 6 9.4787 5.6172 0.9421 14 6 9.8976 7.0582 1.0808 15 1 9.1621 7.8446 0.9979 16 6 11.2200 7.3725 1.3123 17 7 12.1156 6.4148 1.4127 18 14 11.7391 9.1586 1.4848 19 1 11.0182 9.7754 2.6273 20 1 13.2024 9.2275 1.7280 21 1 11.4090 9.8927 0.2368 22 6 3.3600 3.4296 1.2091 23 6 2.6016 4.5760 1.0257 24 6 2.0278 5.1724 2.1378 25 6 2.2382 4.6147 3.3850 26 7 2.9696 3.5263 3.5225 27 6 3.5264 2.9295 2.4865 28 1 -0.3633 0.5140 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 3.9546 0.8004 -0.9019 32 1 3.9574 0.7612 0.8776 33 1 4.0246 2.9337 -2.1145 34 1 2.4769 3.3751 -1.3543 35 1 3.8703 4.4763 -1.2397 36 1 5.9897 2.0062 0.1279 37 1 7.7878 3.5451 1.4678 38 1 8.0746 3.6297 -0.2868 39 1 7.7289 6.0844 -0.2249 40 1 7.4420 5.9997 1.5297 41 1 9.7203 5.0791 1.8588 42 1 10.0081 5.1635 0.1043 43 1 13.0460 6.6359 1.5752 44 1 2.4581 4.9919 0.0394 45 1 1.4280 6.0642 2.0317 46 1 1.7981 5.0756 4.2569 47 1 4.1186 2.0392 2.6382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617931602.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:42 Heat of formation + Delta-G solvation = -115.908588 kcal Electronic energy + Delta-G solvation = -29301.375970 eV Core-core repulsion = 25255.321973 eV Total energy + Delta-G solvation = -4046.053997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.32424 -41.05458 -40.33026 -38.08460 -36.96223 -36.02710 -34.13380 -33.52750 -32.81849 -31.38787 -30.05170 -29.36008 -28.06326 -26.02697 -24.99541 -24.15273 -23.20693 -22.13977 -21.13509 -20.82404 -18.77777 -18.65062 -18.40749 -17.86614 -17.53732 -17.43364 -17.01444 -16.74183 -16.57926 -16.46425 -15.74912 -15.15485 -15.07739 -14.95792 -14.60239 -14.44187 -14.25833 -14.21031 -14.05595 -13.75480 -13.73338 -13.14250 -12.98360 -12.94851 -12.82987 -12.65662 -12.55117 -12.50408 -12.41214 -12.12041 -11.76660 -11.53540 -11.48967 -11.42738 -11.25817 -10.83273 -10.58814 -10.53735 -10.45655 -10.06307 -9.81699 -8.20189 -6.29849 0.16868 0.44301 1.19438 1.38637 1.41370 1.49385 1.53975 1.74055 2.35761 2.42760 2.91326 3.12591 3.39137 3.44075 3.65900 3.76797 3.94300 4.04335 4.06419 4.07840 4.25701 4.29741 4.30610 4.31498 4.33439 4.50699 4.54463 4.62120 4.71531 4.77914 4.79148 4.84471 4.90932 5.00537 5.13800 5.16523 5.21041 5.28814 5.37217 5.42755 5.51819 5.56094 5.77125 5.79748 5.87923 6.28132 6.62947 6.73815 6.85427 7.02171 7.36277 7.38848 8.90999 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019624 B = 0.002516 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.479072 B =11126.759419 C =11800.999742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.463 3.537 4 O -0.518 6.518 5 C -0.114 4.114 6 C 0.236 3.764 7 C -0.168 4.168 8 N -0.710 5.710 9 C 0.520 3.480 10 O -0.562 6.562 11 C -0.130 4.130 12 C -0.079 4.079 13 C 0.027 3.973 14 C -0.548 4.548 15 H 0.049 0.951 16 C 0.004 3.996 17 N -0.928 5.928 18 Si 0.959 3.041 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.123 4.123 23 C -0.036 4.036 24 C -0.186 4.186 25 C 0.080 3.920 26 N -0.512 5.512 27 C 0.084 3.916 28 H 0.063 0.937 29 H 0.130 0.870 30 H 0.053 0.947 31 H 0.155 0.845 32 H 0.140 0.860 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.422 0.578 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.041 0.959 40 H 0.032 0.968 41 H -0.001 1.001 42 H 0.003 0.997 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.172 0.828 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.843 -18.114 -4.380 30.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.277 6.277 3 C 0.306 3.694 4 O -0.407 6.407 5 C -0.151 4.151 6 C 0.150 3.850 7 C -0.226 4.226 8 N -0.365 5.365 9 C 0.308 3.692 10 O -0.439 6.439 11 C -0.170 4.170 12 C -0.117 4.117 13 C -0.010 4.010 14 C -0.586 4.586 15 H 0.067 0.933 16 C -0.194 4.194 17 N -0.568 5.568 18 Si 0.784 3.216 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.194 1.194 22 C -0.126 4.126 23 C -0.062 4.062 24 C -0.206 4.206 25 C -0.077 4.077 26 N -0.221 5.221 27 C -0.072 4.072 28 H 0.081 0.919 29 H 0.148 0.852 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.073 0.927 36 H 0.261 0.739 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.166 0.834 46 H 0.189 0.811 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -24.234 -17.494 -3.542 30.098 hybrid contribution 0.341 1.368 -0.611 1.536 sum -23.893 -16.127 -4.153 29.124 Atomic orbital electron populations 1.23472 0.75024 1.05487 1.02186 1.86479 1.24662 1.32682 1.83914 1.23613 0.92386 0.81385 0.72025 1.90705 1.67733 1.36799 1.45429 1.21660 0.87990 0.95558 1.09934 1.18650 0.80051 0.93670 0.92678 1.22387 1.02686 1.01683 0.95843 1.45891 1.05802 1.09387 1.75404 1.20937 0.90413 0.83193 0.74653 1.90668 1.66964 1.35942 1.50371 1.21674 0.91114 0.98974 1.05218 1.21112 0.96201 0.94623 0.99793 1.19007 0.91434 0.95248 0.95339 1.21656 0.93657 0.94146 1.49127 0.93301 1.25886 0.96767 1.01924 0.94872 1.70049 1.02433 1.33972 1.50331 0.85594 0.77240 0.79822 0.78968 1.19646 1.20263 1.19383 1.20878 0.98842 0.97073 0.95840 1.21537 0.92280 0.93079 0.99304 1.22390 1.02198 1.02213 0.93792 1.23061 0.94878 0.92000 0.97731 1.67634 1.09419 1.10297 1.34722 1.22799 0.97035 0.99658 0.87756 0.91867 0.85206 0.92800 0.82774 0.84204 0.90447 0.90474 0.92709 0.73880 0.87748 0.87040 0.94058 0.94863 0.98307 0.97881 0.92649 0.85430 0.83358 0.81088 0.81633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.56 113.37 1.20 1.52 16 2 O -0.36 -4.93 10.57 -51.41 -0.54 -5.47 16 3 C 0.46 7.32 7.38 71.23 0.53 7.85 16 4 O -0.52 -11.40 11.62 21.97 0.26 -11.15 16 5 C -0.11 -1.17 4.69 29.85 0.14 -1.03 16 6 C 0.24 4.29 0.63 2.86 0.00 4.29 16 7 C -0.17 -3.44 6.93 71.98 0.50 -2.95 16 8 N -0.71 -12.69 5.03 -426.31 -2.14 -14.83 16 9 C 0.52 14.82 7.24 87.66 0.63 15.45 16 10 O -0.56 -20.76 12.63 -3.04 -0.04 -20.80 16 11 C -0.13 -3.96 5.70 29.85 0.17 -3.79 16 12 C -0.08 -3.44 4.44 30.59 0.14 -3.30 16 13 C 0.03 1.42 4.97 29.85 0.15 1.57 16 14 C -0.55 -32.42 9.11 25.60 0.23 -32.18 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C 0.00 0.21 5.46 84.66 0.46 0.67 16 17 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 18 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.12 -3.03 1.95 -19.77 -0.04 -3.07 16 23 C -0.04 -0.98 7.29 22.47 0.16 -0.82 16 24 C -0.19 -4.81 10.11 22.36 0.23 -4.59 16 25 C 0.08 2.08 11.18 84.69 0.95 3.03 16 26 N -0.51 -14.63 10.36 -195.84 -2.03 -16.66 16 27 C 0.08 2.12 10.33 84.67 0.87 2.99 16 28 H 0.06 0.65 8.13 -2.39 -0.02 0.63 16 29 H 0.13 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.14 0.80 7.36 -2.39 -0.02 0.78 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.64 5.56 -2.39 -0.01 1.62 16 35 H 0.05 1.49 5.55 -2.39 -0.01 1.48 16 36 H 0.42 4.03 8.48 -92.71 -0.79 3.24 16 37 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 40 H 0.03 1.55 8.10 -2.38 -0.02 1.53 16 41 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.14 16 43 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 44 H 0.13 3.54 6.06 -2.91 -0.02 3.52 16 45 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 47 H 0.17 3.16 7.39 -2.91 -0.02 3.14 16 Total: -1.00 -81.49 384.36 4.33 -77.16 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.20 Total: 14.69 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 6.32 Total: -14.36 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.89 Total: -87.61 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.33 Total: -37.42 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.49 4.33 -77.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617931602.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.745 kcal (2) G-P(sol) polarization free energy of solvation -81.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds