Wall clock time and date at job start Tue Mar 31 2020 17:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00518 * 2 1 4 4 O 1.20824 * 119.99783 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00240 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46976 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46884 * 184.99419 * 6 5 3 8 8 N 1.46500 * 109.47071 * 304.99793 * 6 5 3 9 9 C 1.34778 * 120.00013 * 300.00074 * 8 6 5 10 10 O 1.21280 * 119.99763 * 0.02562 * 9 8 6 11 11 C 1.50694 * 119.99933 * 180.02562 * 9 8 6 12 12 C 1.52996 * 109.47256 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47268 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47018 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99672 * 0.02562 * 14 13 12 16 16 C 1.37869 * 119.99975 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99909 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00310 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46937 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47569 * 119.99537 * 18 16 14 21 21 H 1.48498 * 109.47496 * 240.00121 * 18 16 14 22 22 C 1.50696 * 109.46812 * 64.99933 * 6 5 3 23 23 C 1.38678 * 120.41768 * 209.97872 * 22 6 5 24 24 C 1.38627 * 118.42399 * 180.02562 * 23 22 6 25 25 C 1.38220 * 119.16050 * 0.02562 * 24 23 22 26 26 N 1.31860 * 120.76284 * 359.97438 * 25 24 23 27 27 C 1.31884 * 121.72590 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47510 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46638 * 300.00153 * 1 2 3 30 30 H 1.09000 * 109.47054 * 59.99467 * 1 2 3 31 31 H 1.09000 * 109.47369 * 59.99599 * 5 3 2 32 32 H 1.08996 * 109.46862 * 299.99334 * 5 3 2 33 33 H 1.08997 * 109.47561 * 300.00062 * 7 6 5 34 34 H 1.09004 * 109.46814 * 60.00359 * 7 6 5 35 35 H 1.08998 * 109.46973 * 179.97438 * 7 6 5 36 36 H 0.96999 * 119.99866 * 119.99923 * 8 6 5 37 37 H 1.09005 * 109.47202 * 299.99719 * 11 9 8 38 38 H 1.08998 * 109.47559 * 59.99906 * 11 9 8 39 39 H 1.09005 * 109.46742 * 299.99947 * 12 11 9 40 40 H 1.09001 * 109.47451 * 59.99479 * 12 11 9 41 41 H 1.08996 * 109.46637 * 299.99547 * 13 12 11 42 42 H 1.08990 * 109.47261 * 59.99837 * 13 12 11 43 43 H 0.97001 * 119.99726 * 179.97438 * 17 16 14 44 44 H 1.08007 * 120.78855 * 359.97438 * 23 22 6 45 45 H 1.08000 * 120.41839 * 180.02562 * 24 23 22 46 46 H 1.07999 * 119.62072 * 180.02562 * 25 24 23 47 47 H 1.07995 * 119.61420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5228 2.8235 -0.1273 8 7 3.3786 3.4346 -1.1325 9 6 3.6234 3.0222 -2.3921 10 8 4.3580 2.0775 -2.5888 11 6 2.9844 3.7351 -3.5559 12 6 3.4233 3.0724 -4.8632 13 6 2.7750 3.7965 -6.0448 14 6 3.2079 3.1441 -7.3325 15 1 3.8780 2.2974 -7.3102 16 6 2.7477 3.6275 -8.5389 17 7 1.9305 4.6576 -8.5659 18 14 3.2835 2.8184 -10.1350 19 1 4.1967 1.6866 -9.8340 20 1 2.0898 2.3115 -10.8583 21 1 3.9898 3.8132 -10.9816 22 6 3.5673 3.3942 1.2866 23 6 3.2629 4.7467 1.3209 24 6 2.8696 5.3042 2.5276 25 6 2.7949 4.4992 3.6488 26 7 3.0919 3.2164 3.5791 27 6 3.4696 2.6525 2.4483 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9558 0.7807 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 5.9853 2.3082 0.7145 34 1 5.8360 2.3517 -1.0587 35 1 5.8319 3.8687 -0.1281 36 1 2.7908 4.1900 -0.9751 37 1 1.8996 3.6774 -3.4661 38 1 3.2939 4.7802 -3.5562 39 1 4.5081 3.1297 -4.9532 40 1 3.1135 2.0273 -4.8627 41 1 1.6903 3.7395 -5.9549 42 1 3.0853 4.8413 -6.0451 43 1 1.6070 4.9979 -9.4147 44 1 3.3315 5.3516 0.4287 45 1 2.6246 6.3541 2.5909 46 1 2.4889 4.9257 4.5927 47 1 3.7053 1.5987 2.4301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001617931603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:46 Heat of formation + Delta-G solvation = -92.457682 kcal Electronic energy + Delta-G solvation = -29391.490364 eV Core-core repulsion = 25346.453275 eV Total energy + Delta-G solvation = -4045.037089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.52404 -40.16964 -39.51399 -37.01948 -36.00928 -34.17241 -32.79178 -32.47527 -31.83349 -30.51354 -29.22238 -27.72982 -27.22382 -24.70558 -23.93155 -23.58654 -21.80231 -21.05368 -19.88194 -19.65912 -18.09860 -17.76977 -17.03482 -16.88025 -16.59203 -16.29025 -16.05730 -15.59842 -15.35800 -14.71096 -14.46262 -14.42673 -14.24058 -13.76524 -13.69870 -13.47379 -13.46191 -13.13436 -12.86670 -12.44213 -12.27210 -12.24663 -12.20926 -12.01648 -11.78583 -11.43176 -11.27728 -10.93657 -10.82262 -10.61387 -10.58986 -10.51360 -10.12038 -9.88711 -9.68704 -9.56986 -9.41744 -9.23596 -9.02436 -8.98194 -8.32529 -5.97857 -3.99251 0.75497 0.96212 2.10882 2.53906 2.84613 3.14870 3.33249 3.40600 3.46138 3.50189 3.93905 4.20944 4.28500 4.48998 4.56117 4.56986 4.62697 4.81721 4.92789 4.94278 5.00862 5.05566 5.18811 5.25412 5.37158 5.37877 5.38324 5.46458 5.48403 5.60381 5.70894 5.72356 5.77028 5.87804 6.07811 6.25317 6.25910 6.33140 6.45223 6.72391 6.92651 7.15913 7.55386 7.62902 7.64280 7.71293 7.83761 8.02974 8.39258 8.46782 9.08183 9.64799 11.13702 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.002640 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.036436 B =10603.661228 C =11243.967935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.361 6.361 3 C 0.464 3.536 4 O -0.496 6.496 5 C -0.134 4.134 6 C 0.238 3.762 7 C -0.160 4.160 8 N -0.722 5.722 9 C 0.517 3.483 10 O -0.537 6.537 11 C -0.139 4.139 12 C -0.093 4.093 13 C 0.020 3.980 14 C -0.516 4.516 15 H 0.056 0.944 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.120 4.120 23 C -0.063 4.063 24 C -0.164 4.164 25 C 0.092 3.908 26 N -0.479 5.479 27 C 0.100 3.900 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.135 0.865 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.403 0.597 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.015 0.985 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.155 0.845 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.153 -2.257 26.527 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.278 6.278 3 C 0.306 3.694 4 O -0.382 6.382 5 C -0.173 4.173 6 C 0.151 3.849 7 C -0.218 4.218 8 N -0.377 5.377 9 C 0.306 3.694 10 O -0.414 6.414 11 C -0.179 4.179 12 C -0.131 4.131 13 C -0.017 4.017 14 C -0.555 4.555 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.122 4.122 23 C -0.090 4.090 24 C -0.184 4.184 25 C -0.065 4.065 26 N -0.187 5.187 27 C -0.057 4.057 28 H 0.118 0.882 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.240 0.760 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.173 0.827 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.289 -3.042 27.015 27.216 hybrid contribution -0.418 0.665 -1.588 1.772 sum 0.871 -2.377 25.427 25.553 Atomic orbital electron populations 1.23247 0.76258 1.03646 1.02531 1.86494 1.23509 1.33525 1.84223 1.23539 0.91880 0.81505 0.72474 1.90639 1.66968 1.36074 1.44558 1.22068 0.88583 0.98878 1.07733 1.18717 0.93809 0.88948 0.83444 1.22236 0.91678 1.03312 1.04552 1.46295 1.50560 1.35952 1.04871 1.21249 0.80499 0.83953 0.83710 1.90596 1.37148 1.28416 1.85192 1.21850 1.01416 1.00805 0.93816 1.21428 1.00633 0.99350 0.91658 1.19134 0.95744 0.95498 0.91346 1.21304 1.28052 1.14994 0.91121 0.92526 1.25025 0.95185 0.95113 0.99243 1.69976 1.33267 1.24689 1.25810 0.86544 0.78451 0.79463 0.83624 1.19673 1.21059 1.21037 1.20732 1.00623 0.95099 0.95795 1.21352 0.95016 0.94169 0.98418 1.22140 1.00959 1.01674 0.93582 1.22779 0.95713 0.89377 0.98583 1.67705 1.10567 1.12663 1.27751 1.22584 0.95635 0.99971 0.87506 0.88152 0.92116 0.91697 0.84673 0.87014 0.91436 0.88909 0.91659 0.76027 0.89466 0.89362 0.92626 0.92790 0.96692 0.96627 0.93132 0.84655 0.84507 0.82731 0.83032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.42 16 2 O -0.36 -4.30 10.56 -39.26 -0.41 -4.72 16 3 C 0.46 5.77 7.20 36.01 0.26 6.03 16 4 O -0.50 -6.93 13.76 -18.75 -0.26 -7.19 16 5 C -0.13 -1.41 4.16 -27.88 -0.12 -1.53 16 6 C 0.24 2.46 0.51 -132.97 -0.07 2.39 16 7 C -0.16 -1.55 8.38 37.16 0.31 -1.24 16 8 N -0.72 -8.55 3.35 -48.68 -0.16 -8.71 16 9 C 0.52 7.83 7.25 -10.99 -0.08 7.75 16 10 O -0.54 -9.36 12.25 5.56 0.07 -9.29 16 11 C -0.14 -2.29 5.70 -27.89 -0.16 -2.45 16 12 C -0.09 -1.97 4.44 -26.73 -0.12 -2.09 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 18 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.12 -1.16 3.49 -104.48 -0.36 -1.53 16 23 C -0.06 -0.56 9.08 -39.28 -0.36 -0.91 16 24 C -0.16 -1.27 10.11 -39.44 -0.40 -1.67 16 25 C 0.09 0.79 11.18 -17.55 -0.20 0.60 16 26 N -0.48 -5.05 10.36 -13.26 -0.14 -5.19 16 27 C 0.10 0.99 9.99 -17.55 -0.18 0.81 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 31 H 0.14 1.64 6.32 -51.93 -0.33 1.31 16 32 H 0.11 0.83 6.24 -51.93 -0.32 0.51 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.11 6.17 -51.93 -0.32 0.79 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.40 4.31 6.66 -40.82 -0.27 4.04 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 1.20 8.10 -51.93 -0.42 0.78 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.14 1.01 6.82 -52.48 -0.36 0.65 16 45 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.15 1.23 6.07 -52.49 -0.32 0.91 16 LS Contribution 385.92 15.07 5.82 5.82 Total: -1.00 -34.96 385.92 -7.27 -42.23 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.95 Total: 2.27 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -0.95 Total: -5.78 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.44 Total: -40.32 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.60 Total: -21.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.96 -7.27 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617931603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.223 kcal (2) G-P(sol) polarization free energy of solvation -34.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds