Wall clock time and date at job start Tue Mar 31 2020 17:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34229 * 117.00518 * 2 1 4 4 O 1.20824 * 119.99783 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00240 * 180.02562 * 3 2 1 6 6 C 1.53006 * 109.46976 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.46884 * 184.99419 * 6 5 3 8 8 N 1.46500 * 109.47071 * 304.99793 * 6 5 3 9 9 C 1.34778 * 120.00013 * 300.00074 * 8 6 5 10 10 O 1.21280 * 119.99763 * 0.02562 * 9 8 6 11 11 C 1.50694 * 119.99933 * 180.02562 * 9 8 6 12 12 C 1.52996 * 109.47256 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47268 * 180.02562 * 12 11 9 14 14 C 1.50706 * 109.47018 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99672 * 0.02562 * 14 13 12 16 16 C 1.37869 * 119.99975 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99909 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00310 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46937 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47569 * 119.99537 * 18 16 14 21 21 H 1.48498 * 109.47496 * 240.00121 * 18 16 14 22 22 C 1.50696 * 109.46812 * 64.99933 * 6 5 3 23 23 C 1.38678 * 120.41768 * 209.97872 * 22 6 5 24 24 C 1.38627 * 118.42399 * 180.02562 * 23 22 6 25 25 C 1.38220 * 119.16050 * 0.02562 * 24 23 22 26 26 N 1.31860 * 120.76284 * 359.97438 * 25 24 23 27 27 C 1.31884 * 121.72590 * 0.02562 * 26 25 24 28 28 H 1.08998 * 109.47510 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46638 * 300.00153 * 1 2 3 30 30 H 1.09000 * 109.47054 * 59.99467 * 1 2 3 31 31 H 1.09000 * 109.47369 * 59.99599 * 5 3 2 32 32 H 1.08996 * 109.46862 * 299.99334 * 5 3 2 33 33 H 1.08997 * 109.47561 * 300.00062 * 7 6 5 34 34 H 1.09004 * 109.46814 * 60.00359 * 7 6 5 35 35 H 1.08998 * 109.46973 * 179.97438 * 7 6 5 36 36 H 0.96999 * 119.99866 * 119.99923 * 8 6 5 37 37 H 1.09005 * 109.47202 * 299.99719 * 11 9 8 38 38 H 1.08998 * 109.47559 * 59.99906 * 11 9 8 39 39 H 1.09005 * 109.46742 * 299.99947 * 12 11 9 40 40 H 1.09001 * 109.47451 * 59.99479 * 12 11 9 41 41 H 1.08996 * 109.46637 * 299.99547 * 13 12 11 42 42 H 1.08990 * 109.47261 * 59.99837 * 13 12 11 43 43 H 0.97001 * 119.99726 * 179.97438 * 17 16 14 44 44 H 1.08007 * 120.78855 * 359.97438 * 23 22 6 45 45 H 1.08000 * 120.41839 * 180.02562 * 24 23 22 46 46 H 1.07999 * 119.62072 * 180.02562 * 25 24 23 47 47 H 1.07995 * 119.61420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 6 4.0002 2.7420 -0.0011 7 6 5.5228 2.8235 -0.1273 8 7 3.3786 3.4346 -1.1325 9 6 3.6234 3.0222 -2.3921 10 8 4.3580 2.0775 -2.5888 11 6 2.9844 3.7351 -3.5559 12 6 3.4233 3.0724 -4.8632 13 6 2.7750 3.7965 -6.0448 14 6 3.2079 3.1441 -7.3325 15 1 3.8780 2.2974 -7.3102 16 6 2.7477 3.6275 -8.5389 17 7 1.9305 4.6576 -8.5659 18 14 3.2835 2.8184 -10.1350 19 1 4.1967 1.6866 -9.8340 20 1 2.0898 2.3115 -10.8583 21 1 3.9898 3.8132 -10.9816 22 6 3.5673 3.3942 1.2866 23 6 3.2629 4.7467 1.3209 24 6 2.8696 5.3042 2.5276 25 6 2.7949 4.4992 3.6488 26 7 3.0919 3.2164 3.5791 27 6 3.4696 2.6525 2.4483 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9558 0.7807 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 5.9853 2.3082 0.7145 34 1 5.8360 2.3517 -1.0587 35 1 5.8319 3.8687 -0.1281 36 1 2.7908 4.1900 -0.9751 37 1 1.8996 3.6774 -3.4661 38 1 3.2939 4.7802 -3.5562 39 1 4.5081 3.1297 -4.9532 40 1 3.1135 2.0273 -4.8627 41 1 1.6903 3.7395 -5.9549 42 1 3.0853 4.8413 -6.0451 43 1 1.6070 4.9979 -9.4147 44 1 3.3315 5.3516 0.4287 45 1 2.6246 6.3541 2.5909 46 1 2.4889 4.9257 4.5927 47 1 3.7053 1.5987 2.4301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001617931603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:45 Heat of formation + Delta-G solvation = -113.884705 kcal Electronic energy + Delta-G solvation = -29392.419510 eV Core-core repulsion = 25346.453275 eV Total energy + Delta-G solvation = -4045.966234 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.39468 -40.99210 -40.56429 -37.98993 -36.99266 -36.04979 -34.15511 -33.42921 -33.18883 -31.26562 -30.15822 -29.42336 -28.00115 -26.08237 -25.02634 -24.48069 -22.82741 -22.33022 -21.37393 -20.65105 -19.06212 -18.70663 -18.38439 -17.93278 -17.56505 -17.47012 -17.05744 -16.67865 -16.59644 -16.40050 -15.47266 -15.34673 -15.07839 -14.99356 -14.77994 -14.38577 -14.27947 -14.27332 -14.04189 -13.75924 -13.61132 -13.33951 -13.16108 -12.99707 -12.96235 -12.83171 -12.57105 -12.51131 -12.37788 -12.13889 -11.82509 -11.56361 -11.55140 -11.43347 -11.23497 -10.82564 -10.70931 -10.55520 -10.38850 -10.22408 -9.87351 -8.20749 -6.30801 0.10172 0.30540 1.16190 1.39156 1.39464 1.53283 1.63240 1.71603 2.13459 2.41515 2.82930 3.12385 3.22129 3.44304 3.58547 3.77812 3.85393 3.93217 4.00694 4.18050 4.22049 4.24041 4.25024 4.25895 4.30869 4.33507 4.56698 4.63391 4.64914 4.70265 4.76912 4.81148 4.85426 4.96014 5.10409 5.11794 5.18135 5.20440 5.28583 5.36325 5.49592 5.55182 5.71529 5.74772 5.86492 6.26472 6.52167 6.69347 6.85228 6.97729 7.24154 7.38135 8.91130 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.002640 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.036436 B =10603.661228 C =11243.967935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.459 3.541 4 O -0.516 6.516 5 C -0.134 4.134 6 C 0.240 3.760 7 C -0.155 4.155 8 N -0.708 5.708 9 C 0.522 3.478 10 O -0.562 6.562 11 C -0.134 4.134 12 C -0.077 4.077 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.053 0.947 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.962 3.038 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.275 1.275 22 C -0.126 4.126 23 C -0.074 4.074 24 C -0.160 4.160 25 C 0.084 3.916 26 N -0.503 5.503 27 C 0.090 3.910 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.410 0.590 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.040 0.960 41 H -0.005 1.005 42 H 0.000 1.000 43 H 0.264 0.736 44 H 0.146 0.854 45 H 0.164 0.836 46 H 0.179 0.821 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.450 -2.202 27.659 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.286 6.286 3 C 0.303 3.697 4 O -0.404 6.404 5 C -0.172 4.172 6 C 0.153 3.847 7 C -0.213 4.213 8 N -0.361 5.361 9 C 0.310 3.690 10 O -0.441 6.441 11 C -0.173 4.173 12 C -0.116 4.116 13 C -0.012 4.012 14 C -0.582 4.582 15 H 0.072 0.928 16 C -0.196 4.196 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.200 1.200 22 C -0.128 4.128 23 C -0.100 4.100 24 C -0.180 4.180 25 C -0.073 4.073 26 N -0.211 5.211 27 C -0.067 4.067 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.248 0.752 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.014 0.986 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.164 0.836 45 H 0.182 0.818 46 H 0.196 0.804 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.579 -2.984 28.181 28.382 hybrid contribution -0.575 0.681 -1.872 2.073 sum 1.004 -2.303 26.309 26.429 Atomic orbital electron populations 1.23460 0.75085 1.05462 1.02142 1.86491 1.24780 1.33351 1.83974 1.23905 0.92561 0.81388 0.71851 1.90618 1.67540 1.36609 1.45619 1.22133 0.87479 0.99183 1.08417 1.18806 0.94059 0.88748 0.83098 1.22180 0.91211 1.03592 1.04267 1.46130 1.49936 1.35760 1.04287 1.20836 0.80279 0.83554 0.84378 1.90600 1.38392 1.29476 1.85680 1.21675 1.01875 1.01520 0.92259 1.21119 0.99568 0.98327 0.92546 1.19023 0.94671 0.94926 0.92569 1.21714 1.28393 1.15317 0.92779 0.92850 1.25928 0.95054 0.95637 1.03020 1.70084 1.34113 1.25882 1.27056 0.85440 0.78313 0.78651 0.78919 1.19022 1.20208 1.20050 1.20629 1.01496 0.95562 0.95138 1.21613 0.94942 0.94063 0.99421 1.22445 0.99783 1.02950 0.92785 1.23271 0.95056 0.88974 0.99967 1.67729 1.11466 1.13806 1.28147 1.22765 0.95829 1.00599 0.87473 0.85339 0.91732 0.92831 0.86223 0.83954 0.89242 0.91173 0.91298 0.75220 0.88878 0.87510 0.93411 0.94145 0.98643 0.98137 0.92706 0.83613 0.81814 0.80385 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.77 16 2 O -0.37 -8.57 10.56 -51.41 -0.54 -9.11 16 3 C 0.46 11.15 7.20 71.24 0.51 11.66 16 4 O -0.52 -14.10 13.76 21.97 0.30 -13.79 16 5 C -0.13 -2.70 4.16 29.85 0.12 -2.58 16 6 C 0.24 4.68 0.51 2.86 0.00 4.68 16 7 C -0.15 -2.82 8.38 71.98 0.60 -2.21 16 8 N -0.71 -16.13 3.35 -426.33 -1.43 -17.56 16 9 C 0.52 15.66 7.25 87.65 0.64 16.29 16 10 O -0.56 -19.77 12.25 -3.03 -0.04 -19.81 16 11 C -0.13 -4.40 5.70 29.84 0.17 -4.23 16 12 C -0.08 -3.37 4.44 30.59 0.14 -3.23 16 13 C 0.03 1.34 4.97 29.85 0.15 1.49 16 14 C -0.54 -31.99 9.11 25.60 0.23 -31.75 16 15 H 0.05 3.09 7.74 -2.91 -0.02 3.07 16 16 C 0.00 0.08 5.46 84.65 0.46 0.54 16 17 N -0.93 -56.87 13.29 21.44 0.28 -56.58 16 18 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 C -0.13 -2.23 3.49 -19.78 -0.07 -2.30 16 23 C -0.07 -1.16 9.08 22.47 0.20 -0.96 16 24 C -0.16 -2.10 10.11 22.36 0.23 -1.87 16 25 C 0.08 1.26 11.18 84.68 0.95 2.20 16 26 N -0.50 -9.81 10.36 -195.85 -2.03 -11.84 16 27 C 0.09 1.64 9.99 84.67 0.85 2.48 16 28 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.08 8.13 -2.39 -0.02 1.07 16 31 H 0.12 2.89 6.32 -2.39 -0.02 2.88 16 32 H 0.14 1.89 6.24 -2.39 -0.01 1.87 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.65 6.17 -2.38 -0.01 1.63 16 35 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.41 8.25 6.66 -92.71 -0.62 7.63 16 37 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 38 H 0.11 3.10 8.14 -2.39 -0.02 3.09 16 39 H 0.05 2.13 8.10 -2.38 -0.02 2.11 16 40 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 41 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 44 H 0.15 1.87 6.82 -2.91 -0.02 1.85 16 45 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 46 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 47 H 0.16 2.36 6.07 -2.91 -0.02 2.34 16 Total: -1.00 -75.83 385.92 5.32 -70.51 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.37 Total: 18.97 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 6.38 Total: -8.01 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.17 Total: -85.99 kcal Atomic # 8 Polarization: -42.43 SS G_CDS: -0.28 Total: -42.71 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.83 5.32 -70.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001617931603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.374 kcal (2) G-P(sol) polarization free energy of solvation -75.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds