Wall clock time and date at job start Tue Mar 31 2020 17:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 C 1.53002 * 109.46837 * 240.00035 * 2 1 3 5 5 O 1.45197 * 109.46831 * 120.00293 * 2 1 3 6 6 C 1.34640 * 116.99990 * 60.00005 * 5 2 1 7 7 O 1.21506 * 120.00196 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99562 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99750 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46972 * 179.97438 * 9 8 6 11 11 C 1.38256 * 119.99755 * 259.99355 * 10 9 8 12 12 C 1.38216 * 120.00037 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.99744 * 359.96154 * 12 11 10 14 14 C 1.38212 * 120.00300 * 359.97134 * 13 12 11 15 15 C 1.38208 * 120.00186 * 80.16985 * 10 9 8 16 16 C 1.50698 * 120.00333 * 0.03695 * 15 10 9 17 17 N 1.46493 * 109.47174 * 80.19328 * 16 15 10 18 18 C 1.34780 * 120.00269 * 180.02562 * 17 16 15 19 19 O 1.21687 * 119.99812 * 0.02562 * 18 17 16 20 20 C 1.46372 * 119.99953 * 179.97438 * 18 17 16 21 21 H 1.08001 * 120.00404 * 0.02562 * 20 18 17 22 22 C 1.40052 * 119.99851 * 179.97438 * 20 18 17 23 23 N 1.30676 * 119.99783 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00201 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46889 * 60.00148 * 24 22 20 26 26 H 1.48496 * 109.47127 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47041 * 300.00384 * 24 22 20 28 28 H 1.09000 * 109.47013 * 300.00333 * 1 2 3 29 29 H 1.09008 * 109.46903 * 59.99673 * 1 2 3 30 30 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47096 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47493 * 300.00259 * 3 2 1 33 33 H 1.09006 * 109.46670 * 59.99712 * 3 2 1 34 34 H 1.08997 * 109.47139 * 300.00134 * 4 2 1 35 35 H 1.09000 * 109.47345 * 60.00588 * 4 2 1 36 36 H 1.09004 * 109.46535 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00264 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47062 * 59.99470 * 9 8 6 39 39 H 1.09000 * 109.46713 * 299.99596 * 9 8 6 40 40 H 1.08002 * 120.00247 * 0.02562 * 11 10 9 41 41 H 1.08005 * 120.00025 * 179.97438 * 12 11 10 42 42 H 1.07999 * 119.99759 * 179.97438 * 13 12 11 43 43 H 1.08002 * 119.99812 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47511 * 200.19698 * 16 15 10 45 45 H 1.09008 * 109.47004 * 320.19133 * 16 15 10 46 46 H 0.97003 * 120.00212 * 0.02562 * 17 16 15 47 47 H 0.96999 * 119.99428 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6521 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0671 -2.6655 2.4171 9 6 1.6739 -4.0670 2.5830 10 6 2.2648 -4.6067 3.8599 11 6 3.4109 -5.3789 3.8189 12 6 3.9526 -5.8744 4.9900 13 6 3.3489 -5.5971 6.2024 14 6 2.2040 -4.8239 6.2436 15 6 1.6591 -4.3327 5.0716 16 6 0.4073 -3.4949 5.1159 17 7 -0.7490 -4.3261 4.7721 18 6 -1.9836 -3.7860 4.7466 19 8 -2.1377 -2.6078 5.0089 20 6 -3.1387 -4.6165 4.4025 21 1 -3.0019 -5.6621 4.1693 22 6 -4.4217 -4.0554 4.3766 23 7 -4.5873 -2.7903 4.6592 24 14 -5.8961 -5.1153 3.9381 25 1 -6.0117 -6.2299 4.9125 26 1 -7.1296 -4.2896 3.9812 27 1 -5.7189 -5.6688 2.5715 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2490 37 1 2.6266 -2.2367 3.0833 38 1 2.0411 -4.6498 1.7382 39 1 0.5870 -4.1365 2.6274 40 1 3.8828 -5.5951 2.8718 41 1 4.8476 -6.4780 4.9579 42 1 3.7720 -5.9846 7.1174 43 1 1.7327 -4.6069 7.1908 44 1 0.2772 -3.0886 6.1190 45 1 0.4921 -2.6767 4.4007 46 1 -0.6261 -5.2653 4.5626 47 1 -5.4758 -2.4017 4.6409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645690441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:12 Heat of formation + Delta-G solvation = -101.976464 kcal Electronic energy + Delta-G solvation = -29252.460962 eV Core-core repulsion = 25207.011108 eV Total energy + Delta-G solvation = -4045.449854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65940 -39.70482 -37.24960 -37.11797 -34.89774 -33.97626 -33.60767 -32.34822 -31.25018 -30.65886 -27.43909 -27.29712 -27.04957 -26.21167 -24.71657 -22.41109 -21.87739 -20.74282 -19.99699 -19.61202 -18.15282 -17.39900 -16.57730 -16.22738 -16.16018 -15.52533 -15.32483 -15.20988 -14.84325 -14.39083 -14.32149 -14.20266 -13.95264 -13.40919 -13.19067 -13.10832 -12.86052 -12.65613 -12.50884 -12.46249 -12.11834 -12.10171 -11.90491 -11.81557 -11.47301 -11.36060 -11.26286 -11.17138 -11.01704 -10.83364 -10.75827 -10.41555 -10.27828 -10.22948 -9.93520 -9.06970 -8.90203 -8.81872 -8.80162 -7.58261 -7.51342 -6.15897 -4.61320 1.14748 1.34829 2.39072 3.05082 3.18559 3.23129 3.25128 3.68901 4.14616 4.34434 4.60996 4.63581 4.73073 4.76905 4.81291 4.92249 4.92409 4.98912 5.15842 5.31629 5.39783 5.42554 5.51471 5.57408 5.64911 5.68982 5.76926 5.78577 5.84115 5.91667 5.95857 5.98382 6.02044 6.20301 6.22928 6.35925 6.39099 6.43418 6.46792 6.54333 6.65453 6.77126 6.95232 7.45984 7.56017 7.92639 8.07539 8.34191 8.55439 9.05114 9.53443 10.62040 10.80244 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.004500 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4020.928818 B = 6220.073431 C = 9315.734707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.137 3.863 3 C -0.140 4.140 4 C -0.182 4.182 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.564 6.564 8 N -0.703 5.703 9 C 0.175 3.825 10 C -0.099 4.099 11 C -0.100 4.100 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.107 4.107 15 C -0.067 4.067 16 C 0.165 3.835 17 N -0.761 5.761 18 C 0.556 3.444 19 O -0.579 6.579 20 C -0.544 4.544 21 H 0.067 0.933 22 C 0.089 3.911 23 N -0.768 5.768 24 Si 0.907 3.093 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.268 1.268 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.404 0.596 38 H 0.075 0.925 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.381 0.619 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.154 -0.047 -5.248 18.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.239 4.239 5 O -0.281 6.281 6 C 0.404 3.596 7 O -0.452 6.452 8 N -0.362 5.362 9 C 0.053 3.947 10 C -0.100 4.100 11 C -0.119 4.119 12 C -0.145 4.145 13 C -0.130 4.130 14 C -0.126 4.126 15 C -0.068 4.068 16 C 0.040 3.960 17 N -0.417 5.417 18 C 0.360 3.640 19 O -0.462 6.462 20 C -0.581 4.581 21 H 0.085 0.915 22 C -0.131 4.131 23 N -0.396 5.396 24 Si 0.732 3.268 25 H -0.193 1.193 26 H -0.206 1.206 27 H -0.192 1.192 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.239 0.761 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.212 0.788 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.521 0.821 -5.515 18.386 hybrid contribution -0.400 -0.845 0.047 0.937 sum 17.120 -0.024 -5.468 17.972 Atomic orbital electron populations 1.22528 0.93629 1.05571 1.02549 1.22038 0.94659 0.91305 0.81976 1.21851 1.01880 0.92799 1.03166 1.22512 1.01160 1.03691 0.96565 1.86277 1.71590 1.23742 1.46519 1.18019 0.78770 0.80431 0.82342 1.90912 1.40439 1.70418 1.43458 1.44680 1.55602 1.12361 1.23577 1.20239 1.01563 0.78780 0.94097 1.19707 0.96212 1.00093 0.93998 1.21052 0.94973 0.97358 0.98495 1.21096 1.00260 1.00647 0.92524 1.21190 0.95819 0.98085 0.97906 1.21166 0.95884 0.97403 0.98133 1.20186 0.96595 0.97489 0.92492 1.19869 0.82675 0.92721 1.00743 1.46197 1.05924 1.11966 1.77625 1.18224 0.80878 0.87587 0.77296 1.90603 1.84554 1.17233 1.53799 1.20827 0.90532 0.96606 1.50109 0.91491 1.25691 0.99749 0.94759 0.92922 1.70013 1.23001 1.11784 1.34851 0.86449 0.80348 0.80325 0.79724 1.19297 1.20571 1.19239 0.91818 0.91355 0.89097 0.91710 0.90267 0.91364 0.89314 0.91282 0.92444 0.76123 0.90698 0.88701 0.85923 0.86097 0.86040 0.85596 0.92545 0.92094 0.78799 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 8.37 37.16 0.31 -2.37 16 2 C 0.14 1.78 1.13 -90.62 -0.10 1.68 16 3 C -0.14 -1.37 8.85 37.16 0.33 -1.04 16 4 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 5 O -0.37 -5.52 9.94 -40.32 -0.40 -5.92 16 6 C 0.65 10.80 8.06 54.06 0.44 11.24 16 7 O -0.56 -10.69 11.88 -19.28 -0.23 -10.92 16 8 N -0.70 -10.17 4.91 -66.47 -0.33 -10.50 16 9 C 0.17 2.54 4.99 -5.19 -0.03 2.52 16 10 C -0.10 -1.29 5.25 -104.63 -0.55 -1.84 16 11 C -0.10 -1.08 9.67 -39.58 -0.38 -1.46 16 12 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 13 C -0.11 -1.17 10.05 -39.58 -0.40 -1.57 16 14 C -0.11 -1.36 9.67 -39.58 -0.38 -1.74 16 15 C -0.07 -0.97 5.25 -104.63 -0.55 -1.52 16 16 C 0.16 3.12 4.99 -5.20 -0.03 3.10 16 17 N -0.76 -16.92 4.90 -62.91 -0.31 -17.23 16 18 C 0.56 15.88 7.75 -12.99 -0.10 15.78 16 19 O -0.58 -18.87 15.02 5.20 0.08 -18.80 16 20 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 21 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 22 C 0.09 2.51 5.50 -17.36 -0.10 2.41 16 23 N -0.77 -23.33 11.83 55.55 0.66 -22.67 16 24 Si 0.91 20.51 29.56 -169.99 -5.02 15.48 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.09 1.60 5.88 -51.93 -0.31 1.30 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.40 5.10 8.57 -40.82 -0.35 4.75 16 38 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 39 H 0.09 1.72 6.87 -51.93 -0.36 1.36 16 40 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 41 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.13 1.53 8.04 -52.49 -0.42 1.11 16 44 H 0.06 1.13 8.00 -51.93 -0.42 0.71 16 45 H 0.06 1.25 6.86 -51.92 -0.36 0.89 16 46 H 0.38 7.64 8.44 -40.82 -0.34 7.30 16 47 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -35.87 390.67 -8.67 -44.54 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: -7.04 Total: 14.33 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.96 Total: 5.80 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.02 Total: -50.39 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.55 Total: -35.64 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.87 -8.67 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645690441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.436 kcal (2) G-P(sol) polarization free energy of solvation -35.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds