Wall clock time and date at job start Tue Mar 31 2020 17:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47406 * 2 1 4 4 C 1.53002 * 109.46837 * 240.00035 * 2 1 3 5 5 O 1.45197 * 109.46831 * 120.00293 * 2 1 3 6 6 C 1.34640 * 116.99990 * 60.00005 * 5 2 1 7 7 O 1.21506 * 120.00196 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99562 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99750 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46972 * 179.97438 * 9 8 6 11 11 C 1.38256 * 119.99755 * 259.99355 * 10 9 8 12 12 C 1.38216 * 120.00037 * 180.02562 * 11 10 9 13 13 C 1.38255 * 119.99744 * 359.96154 * 12 11 10 14 14 C 1.38212 * 120.00300 * 359.97134 * 13 12 11 15 15 C 1.38208 * 120.00186 * 80.16985 * 10 9 8 16 16 C 1.50698 * 120.00333 * 0.03695 * 15 10 9 17 17 N 1.46493 * 109.47174 * 80.19328 * 16 15 10 18 18 C 1.34780 * 120.00269 * 180.02562 * 17 16 15 19 19 O 1.21687 * 119.99812 * 0.02562 * 18 17 16 20 20 C 1.46372 * 119.99953 * 179.97438 * 18 17 16 21 21 H 1.08001 * 120.00404 * 0.02562 * 20 18 17 22 22 C 1.40052 * 119.99851 * 179.97438 * 20 18 17 23 23 N 1.30676 * 119.99783 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 120.00201 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.46889 * 60.00148 * 24 22 20 26 26 H 1.48496 * 109.47127 * 180.02562 * 24 22 20 27 27 H 1.48507 * 109.47041 * 300.00384 * 24 22 20 28 28 H 1.09000 * 109.47013 * 300.00333 * 1 2 3 29 29 H 1.09008 * 109.46903 * 59.99673 * 1 2 3 30 30 H 1.08997 * 109.47366 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47096 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47493 * 300.00259 * 3 2 1 33 33 H 1.09006 * 109.46670 * 59.99712 * 3 2 1 34 34 H 1.08997 * 109.47139 * 300.00134 * 4 2 1 35 35 H 1.09000 * 109.47345 * 60.00588 * 4 2 1 36 36 H 1.09004 * 109.46535 * 180.02562 * 4 2 1 37 37 H 0.96996 * 120.00264 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.47062 * 59.99470 * 9 8 6 39 39 H 1.09000 * 109.46713 * 299.99596 * 9 8 6 40 40 H 1.08002 * 120.00247 * 0.02562 * 11 10 9 41 41 H 1.08005 * 120.00025 * 179.97438 * 12 11 10 42 42 H 1.07999 * 119.99759 * 179.97438 * 13 12 11 43 43 H 1.08002 * 119.99812 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47511 * 200.19698 * 16 15 10 45 45 H 1.09008 * 109.47004 * 320.19133 * 16 15 10 46 46 H 0.97003 * 120.00212 * 0.02562 * 17 16 15 47 47 H 0.96999 * 119.99428 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1855 6 6 1.6521 -1.9724 1.3382 7 8 0.9508 -2.5095 0.5039 8 7 2.0671 -2.6655 2.4171 9 6 1.6739 -4.0670 2.5830 10 6 2.2648 -4.6067 3.8599 11 6 3.4109 -5.3789 3.8189 12 6 3.9526 -5.8744 4.9900 13 6 3.3489 -5.5971 6.2024 14 6 2.2040 -4.8239 6.2436 15 6 1.6591 -4.3327 5.0716 16 6 0.4073 -3.4949 5.1159 17 7 -0.7490 -4.3261 4.7721 18 6 -1.9836 -3.7860 4.7466 19 8 -2.1377 -2.6078 5.0089 20 6 -3.1387 -4.6165 4.4025 21 1 -3.0019 -5.6621 4.1693 22 6 -4.4217 -4.0554 4.3766 23 7 -4.5873 -2.7903 4.6592 24 14 -5.8961 -5.1153 3.9381 25 1 -6.0117 -6.2299 4.9125 26 1 -7.1296 -4.2896 3.9812 27 1 -5.7189 -5.6688 2.5715 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1393 36 1 3.1300 -0.7216 -1.2490 37 1 2.6266 -2.2367 3.0833 38 1 2.0411 -4.6498 1.7382 39 1 0.5870 -4.1365 2.6274 40 1 3.8828 -5.5951 2.8718 41 1 4.8476 -6.4780 4.9579 42 1 3.7720 -5.9846 7.1174 43 1 1.7327 -4.6069 7.1908 44 1 0.2772 -3.0886 6.1190 45 1 0.4921 -2.6767 4.4007 46 1 -0.6261 -5.2653 4.5626 47 1 -5.4758 -2.4017 4.6409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645690441.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:12 Heat of formation + Delta-G solvation = -127.751800 kcal Electronic energy + Delta-G solvation = -29253.578665 eV Core-core repulsion = 25207.011108 eV Total energy + Delta-G solvation = -4046.567557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88695 -40.81600 -39.16717 -38.41199 -36.16793 -35.47772 -34.95555 -34.50013 -32.28111 -32.10174 -28.87315 -28.40179 -28.31183 -27.55295 -26.27116 -23.50211 -23.00160 -22.01994 -21.62540 -21.07813 -19.41353 -19.28634 -17.78060 -17.52617 -17.45715 -17.16677 -16.68030 -16.44839 -16.07621 -16.03089 -15.68982 -15.41536 -15.31288 -14.93266 -14.48099 -14.39920 -14.17792 -13.93785 -13.67086 -13.44688 -13.35908 -13.30355 -13.11778 -13.06549 -12.93506 -12.88217 -12.71165 -12.65373 -12.50949 -12.36215 -12.09183 -11.94312 -11.87082 -11.41960 -11.19414 -10.94067 -10.32735 -10.08248 -9.82500 -9.63348 -9.51056 -8.30909 -6.87904 0.15962 0.40303 1.25990 1.37167 1.41281 1.52586 1.74086 2.22936 2.45052 2.70835 3.17772 3.36715 3.54752 3.59424 3.72982 3.76764 3.77670 3.91344 3.92226 4.13103 4.34285 4.40077 4.43901 4.56462 4.59312 4.63629 4.71730 4.73166 4.75983 4.81376 4.82618 4.85757 5.00007 5.03020 5.11294 5.18486 5.26061 5.29021 5.33964 5.49282 5.55409 5.57147 5.67124 5.84359 6.03378 6.16605 6.22943 6.33995 6.84285 7.29445 7.49806 8.46084 8.64786 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.006962 B = 0.004500 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4020.928818 B = 6220.073431 C = 9315.734707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.175 4.175 5 O -0.369 6.369 6 C 0.644 3.356 7 O -0.593 6.593 8 N -0.694 5.694 9 C 0.181 3.819 10 C -0.101 4.101 11 C -0.094 4.094 12 C -0.112 4.112 13 C -0.104 4.104 14 C -0.115 4.115 15 C -0.085 4.085 16 C 0.173 3.827 17 N -0.746 5.746 18 C 0.539 3.461 19 O -0.632 6.632 20 C -0.574 4.574 21 H 0.086 0.914 22 C 0.029 3.971 23 N -0.821 5.821 24 Si 0.996 3.004 25 H -0.251 1.251 26 H -0.273 1.273 27 H -0.257 1.257 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.413 0.587 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.148 0.852 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.124 0.876 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.392 0.608 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.401 -2.006 -5.821 21.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.088 3.912 3 C -0.190 4.190 4 C -0.232 4.232 5 O -0.284 6.284 6 C 0.397 3.603 7 O -0.484 6.484 8 N -0.354 5.354 9 C 0.059 3.941 10 C -0.102 4.102 11 C -0.113 4.113 12 C -0.130 4.130 13 C -0.122 4.122 14 C -0.134 4.134 15 C -0.086 4.086 16 C 0.049 3.951 17 N -0.400 5.400 18 C 0.344 3.656 19 O -0.519 6.519 20 C -0.610 4.610 21 H 0.104 0.896 22 C -0.186 4.186 23 N -0.451 5.451 24 Si 0.815 3.185 25 H -0.175 1.175 26 H -0.197 1.197 27 H -0.181 1.181 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.249 0.751 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.170 0.830 43 H 0.142 0.858 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.226 0.774 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.838 -1.170 -6.070 20.779 hybrid contribution -0.977 -0.234 0.242 1.033 sum 18.861 -1.403 -5.828 19.791 Atomic orbital electron populations 1.22500 0.95314 1.03160 1.03123 1.22440 0.93594 0.93237 0.81902 1.21880 1.02768 0.90194 1.04181 1.22440 1.01954 1.02005 0.96819 1.86294 1.71462 1.22904 1.47747 1.18294 0.78575 0.80931 0.82496 1.90897 1.41715 1.71141 1.44652 1.44696 1.55117 1.12454 1.23128 1.20117 0.99152 0.79052 0.95807 1.19548 0.97355 1.01049 0.92255 1.21312 0.93648 0.95982 1.00317 1.21546 1.00657 0.99292 0.91459 1.21526 0.94381 0.96553 0.99695 1.21236 0.96992 0.97965 0.97183 1.19751 0.95419 0.99124 0.94281 1.19763 0.83835 0.92745 0.98745 1.45806 1.05461 1.12648 1.76088 1.18598 0.82940 0.87102 0.76980 1.90550 1.85937 1.19291 1.56151 1.21389 0.91451 0.97628 1.50551 0.89614 1.26972 1.03486 0.96200 0.91921 1.70189 1.24307 1.14435 1.36152 0.85098 0.75171 0.78224 0.79968 1.17467 1.19724 1.18121 0.93450 0.88544 0.92887 0.90272 0.87655 0.91951 0.92246 0.88867 0.91012 0.75106 0.89330 0.93034 0.83474 0.82357 0.82975 0.85794 0.94264 0.94370 0.77439 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 8.37 71.98 0.60 -4.98 16 2 C 0.12 3.25 1.13 -10.79 -0.01 3.24 16 3 C -0.13 -2.41 8.85 71.98 0.64 -1.77 16 4 C -0.18 -4.04 8.37 71.98 0.60 -3.44 16 5 O -0.37 -11.53 9.94 -55.49 -0.55 -12.08 16 6 C 0.64 22.57 8.06 129.79 1.05 23.62 16 7 O -0.59 -24.08 11.88 19.82 0.24 -23.85 16 8 N -0.69 -21.09 4.91 -594.61 -2.92 -24.00 16 9 C 0.18 5.45 4.99 85.63 0.43 5.88 16 10 C -0.10 -2.57 5.25 -19.87 -0.10 -2.68 16 11 C -0.09 -1.73 9.67 22.27 0.22 -1.51 16 12 C -0.11 -1.68 10.05 22.27 0.22 -1.46 16 13 C -0.10 -1.79 10.05 22.27 0.22 -1.56 16 14 C -0.12 -2.79 9.67 22.27 0.22 -2.57 16 15 C -0.08 -2.49 5.25 -19.87 -0.10 -2.60 16 16 C 0.17 7.06 4.99 85.63 0.43 7.49 16 17 N -0.75 -35.17 4.90 -471.15 -2.31 -37.47 16 18 C 0.54 32.66 7.75 86.36 0.67 33.33 16 19 O -0.63 -44.07 15.02 -4.31 -0.06 -44.13 16 20 C -0.57 -33.88 9.54 24.83 0.24 -33.64 16 21 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 22 C 0.03 1.70 5.50 85.30 0.47 2.16 16 23 N -0.82 -52.07 11.83 21.84 0.26 -51.81 16 24 Si 1.00 42.55 29.56 68.60 2.03 44.58 16 25 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 30 H 0.05 2.02 5.88 -2.39 -0.01 2.01 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.41 10.83 8.57 -92.71 -0.79 10.04 16 38 H 0.09 2.39 8.00 -2.39 -0.02 2.37 16 39 H 0.05 2.01 6.87 -2.39 -0.02 1.99 16 40 H 0.15 2.02 8.04 -2.91 -0.02 2.00 16 41 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 43 H 0.12 2.98 8.04 -2.91 -0.02 2.96 16 44 H 0.04 1.70 8.00 -2.39 -0.02 1.68 16 45 H 0.04 1.71 6.86 -2.38 -0.02 1.69 16 46 H 0.39 16.45 8.44 -92.71 -0.78 15.67 16 47 H 0.27 15.77 8.29 -92.71 -0.77 15.00 16 Total: -1.00 -85.37 390.67 1.88 -83.49 By element: Atomic # 1 Polarization: 46.36 SS G_CDS: -0.58 Total: 45.79 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.78 Total: 19.50 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.97 Total: -113.29 kcal Atomic # 8 Polarization: -79.68 SS G_CDS: -0.38 Total: -80.07 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -85.37 1.88 -83.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645690441.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.264 kcal (2) G-P(sol) polarization free energy of solvation -85.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds