Wall clock time and date at job start Tue Mar 31 2020 18:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47579 * 2 1 4 4 N 1.46494 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00172 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99687 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00280 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.47166 * 300.00159 * 7 5 4 9 9 C 1.53007 * 109.46825 * 60.00272 * 7 5 4 10 10 N 1.46497 * 109.47000 * 179.97438 * 7 5 4 11 11 C 1.34779 * 119.99961 * 155.00248 * 10 7 5 12 12 O 1.21277 * 119.99636 * 0.02562 * 11 10 7 13 13 C 1.50696 * 120.00211 * 180.02562 * 11 10 7 14 14 C 1.50702 * 109.47354 * 180.02562 * 13 11 10 15 15 C 1.38303 * 119.92825 * 269.72656 * 14 13 11 16 16 C 1.38092 * 120.06969 * 179.72136 * 15 14 13 17 17 C 1.38878 * 119.92976 * 0.56719 * 16 15 14 18 18 O 1.35755 * 120.07407 * 179.67927 * 17 16 15 19 19 C 1.34828 * 117.00336 * 174.49020 * 18 17 16 20 20 H 1.07993 * 119.99801 * 5.05765 * 19 18 17 21 21 C 1.38649 * 119.99598 * 185.05883 * 19 18 17 22 22 N 1.31559 * 120.00446 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99730 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47021 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46936 * 120.00084 * 23 21 19 26 26 H 1.48497 * 109.47119 * 239.99961 * 23 21 19 27 27 C 1.38883 * 119.86178 * 359.70761 * 17 16 15 28 28 C 1.38097 * 119.92838 * 359.97438 * 27 17 16 29 29 H 1.09005 * 109.47536 * 300.00406 * 1 2 3 30 30 H 1.09006 * 109.47141 * 59.99666 * 1 2 3 31 31 H 1.08996 * 109.47536 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47044 * 239.99600 * 2 1 3 33 33 H 1.09002 * 109.46646 * 120.00323 * 2 1 3 34 34 H 1.09001 * 109.46802 * 60.00006 * 3 2 1 35 35 H 1.08998 * 109.46850 * 300.00328 * 3 2 1 36 36 H 0.97004 * 120.00299 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.46863 * 180.02562 * 9 7 5 38 38 H 1.09004 * 109.46779 * 299.99723 * 9 7 5 39 39 H 1.08998 * 109.47086 * 59.99544 * 9 7 5 40 40 H 0.97005 * 120.00236 * 335.00055 * 10 7 5 41 41 H 1.09008 * 109.47012 * 299.99799 * 13 11 10 42 42 H 1.08997 * 109.47715 * 59.99652 * 13 11 10 43 43 H 1.08001 * 119.96172 * 359.97438 * 15 14 13 44 44 H 1.08002 * 120.03623 * 180.26808 * 16 15 14 45 45 H 0.97002 * 119.99855 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.03191 * 179.97438 * 27 17 16 47 47 H 1.08005 * 119.96475 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6095 0.0012 6 8 3.5726 3.6599 0.0008 7 6 5.6860 2.6095 0.0025 8 1 6.0486 2.0956 0.8926 9 6 6.1969 1.8883 -1.2465 10 7 6.1743 3.9906 0.0023 11 6 7.3960 4.2735 0.4965 12 8 8.0911 3.3846 0.9408 13 6 7.8981 5.6944 0.4969 14 6 9.2795 5.7388 1.0977 15 6 9.4342 5.9334 2.4582 16 6 10.6984 5.9689 3.0127 17 6 11.8155 5.8207 2.2010 18 8 13.0599 5.8617 2.7421 19 6 14.0945 5.5977 1.9187 20 1 13.9201 5.4476 0.8636 21 6 15.3821 5.5189 2.4268 22 7 15.5945 5.7023 3.7121 23 14 16.8154 5.1525 1.2862 24 1 16.3141 4.9893 -0.1020 25 1 17.7850 6.2763 1.3329 26 1 17.4866 3.9012 1.7210 27 6 11.6570 5.6312 0.8343 28 6 10.3898 5.5901 0.2868 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9900 0.6023 0.0013 37 1 7.2869 1.8879 -1.2454 38 1 5.8335 0.8606 -1.2468 39 1 5.8343 2.4022 -2.1367 40 1 5.6185 4.7016 -0.3534 41 1 7.9355 6.0668 -0.5269 42 1 7.2251 6.3175 1.0858 43 1 8.5653 6.0536 3.0882 44 1 10.8185 6.1166 4.0758 45 1 16.4954 5.6468 4.0676 46 1 12.5238 5.5161 0.2004 47 1 10.2658 5.4423 -0.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647613009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:32 Heat of formation + Delta-G solvation = -89.504540 kcal Electronic energy + Delta-G solvation = -27327.466596 eV Core-core repulsion = 23282.557565 eV Total energy + Delta-G solvation = -4044.909031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64418 -39.47878 -38.68030 -36.57418 -36.28641 -35.01464 -33.25191 -32.44750 -31.67484 -30.36622 -30.07204 -26.91939 -26.63244 -25.16030 -24.22001 -22.22604 -21.90618 -21.25374 -20.45608 -20.09903 -18.03176 -17.91209 -17.05288 -16.84793 -16.38961 -16.24038 -15.68694 -15.38581 -14.96138 -14.55287 -14.33202 -14.28250 -14.15580 -13.66633 -13.52763 -13.49950 -13.36362 -13.15673 -12.81780 -12.70191 -12.63421 -12.60215 -12.38565 -12.00475 -11.75682 -11.71871 -11.46301 -11.43300 -11.22989 -10.81288 -10.70101 -10.54564 -10.37944 -10.24418 -9.73050 -9.58906 -9.26615 -9.22495 -8.77474 -8.08433 -7.10175 -6.39750 -3.98178 2.16524 2.27329 2.31807 2.54987 2.79967 3.14953 3.17149 3.22819 3.28612 4.01267 4.16639 4.29157 4.39650 4.60042 4.65981 4.71525 4.81453 5.03375 5.04687 5.07170 5.14386 5.18178 5.22323 5.33237 5.37082 5.39508 5.44594 5.52655 5.54545 5.63426 5.74624 5.79480 5.81874 5.91739 5.92307 6.26172 6.28221 6.48579 6.77006 6.96436 6.98124 7.11786 7.30525 7.43654 7.47461 7.51678 7.70960 7.90570 8.05828 8.31935 9.06194 9.77374 10.78553 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.001748 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.734609 B =16013.941913 C =16328.396247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.728 5.728 5 C 0.513 3.487 6 O -0.535 6.535 7 C 0.126 3.874 8 H 0.114 0.886 9 C -0.159 4.159 10 N -0.724 5.724 11 C 0.514 3.486 12 O -0.520 6.520 13 C -0.078 4.078 14 C -0.169 4.169 15 C -0.059 4.059 16 C -0.191 4.191 17 C 0.156 3.844 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.232 4.232 28 C -0.056 4.056 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.408 0.592 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.886 -9.538 -10.626 30.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.006 4.006 4 N -0.381 5.381 5 C 0.298 3.702 6 O -0.411 6.411 7 C 0.017 3.983 8 H 0.132 0.868 9 C -0.218 4.218 10 N -0.380 5.380 11 C 0.301 3.699 12 O -0.394 6.394 13 C -0.118 4.118 14 C -0.171 4.171 15 C -0.078 4.078 16 C -0.211 4.211 17 C 0.103 3.897 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.252 4.252 28 C -0.074 4.074 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.244 0.756 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.078 0.922 46 H 0.144 0.856 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -26.525 -9.363 -9.902 29.821 hybrid contribution 0.602 -0.395 -0.774 1.057 sum -25.923 -9.759 -10.676 29.686 Atomic orbital electron populations 1.21679 0.94405 1.02301 1.02409 1.21747 0.97140 0.95661 1.02924 1.21444 0.79137 0.97385 1.02650 1.45957 1.07559 1.08693 1.75885 1.20749 0.89983 0.83879 0.75555 1.90707 1.70086 1.31219 1.49098 1.20681 0.89728 0.86109 1.01807 0.86821 1.22145 1.03553 0.99717 0.96368 1.45890 1.18616 1.08217 1.65303 1.21102 0.80180 0.92201 0.76419 1.90740 1.55670 1.48420 1.44607 1.20393 0.96072 0.92507 1.02854 1.18636 0.92195 1.12298 0.93938 1.20411 0.95716 0.97958 0.93701 1.20153 0.90463 1.11234 0.99201 1.19384 0.86608 0.92198 0.91521 1.83977 1.10349 1.76173 1.37801 1.21375 0.84170 1.49788 0.91295 0.89041 1.25280 0.97865 0.96761 0.96657 1.70054 1.22086 1.45897 1.11847 0.85652 0.80125 0.78306 0.79360 1.19125 1.20197 1.20180 1.21104 0.97452 1.11351 0.95267 1.20502 0.91910 0.97073 0.97959 0.92271 0.92315 0.92065 0.91179 0.91133 0.91313 0.91310 0.76196 0.90297 0.91378 0.91840 0.75614 0.88856 0.88770 0.87363 0.86562 0.92150 0.85602 0.87821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.15 0.37 -0.13 16 2 C -0.14 -0.48 6.05 -26.73 -0.16 -0.64 16 3 C 0.12 0.67 5.67 -4.05 -0.02 0.65 16 4 N -0.73 -4.53 5.45 -60.30 -0.33 -4.86 16 5 C 0.51 4.78 7.22 -10.98 -0.08 4.70 16 6 O -0.53 -6.72 15.84 5.55 0.09 -6.63 16 7 C 0.13 1.19 2.99 -69.08 -0.21 0.99 16 8 H 0.11 1.17 7.58 -51.93 -0.39 0.78 16 9 C -0.16 -1.24 9.38 37.16 0.35 -0.89 16 10 N -0.72 -7.92 4.95 -54.93 -0.27 -8.19 16 11 C 0.51 7.21 7.79 -10.99 -0.09 7.13 16 12 O -0.52 -9.51 15.70 5.56 0.09 -9.42 16 13 C -0.08 -1.02 5.83 -29.04 -0.17 -1.19 16 14 C -0.17 -3.02 4.38 -104.58 -0.46 -3.48 16 15 C -0.06 -1.13 9.69 -39.61 -0.38 -1.51 16 16 C -0.19 -4.26 9.99 -39.40 -0.39 -4.66 16 17 C 0.16 3.95 6.65 -39.11 -0.26 3.69 16 18 O -0.18 -5.29 9.76 0.04 0.00 -5.29 16 19 C -0.39 -11.19 9.49 30.88 0.29 -10.90 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -25.83 13.67 55.48 0.76 -25.07 16 23 Si 0.94 20.97 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.23 -5.29 9.17 -39.39 -0.36 -5.65 16 28 C -0.06 -1.08 9.69 -39.61 -0.38 -1.46 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.40 1.52 7.89 -40.82 -0.32 1.20 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.35 7.57 -51.93 -0.39 -0.04 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.41 3.95 7.79 -40.82 -0.32 3.63 16 41 H 0.09 0.99 8.08 -51.92 -0.42 0.57 16 42 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 44 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 45 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.13 2.85 5.64 -52.49 -0.30 2.56 16 47 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 399.22 15.07 6.02 6.02 Total: -1.00 -36.16 399.22 -7.77 -43.93 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.04 Total: 5.96 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.05 Total: -12.38 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.16 Total: -38.12 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.18 Total: -21.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.16 -7.77 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647613009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.578 kcal (2) G-P(sol) polarization free energy of solvation -36.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds