Wall clock time and date at job start Tue Mar 31 2020 18:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47579 * 2 1 4 4 N 1.46494 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00172 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99687 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00280 * 179.97438 * 5 4 3 8 8 H 1.08994 * 109.47166 * 300.00159 * 7 5 4 9 9 C 1.53007 * 109.46825 * 60.00272 * 7 5 4 10 10 N 1.46497 * 109.47000 * 179.97438 * 7 5 4 11 11 C 1.34779 * 119.99961 * 155.00248 * 10 7 5 12 12 O 1.21277 * 119.99636 * 0.02562 * 11 10 7 13 13 C 1.50696 * 120.00211 * 180.02562 * 11 10 7 14 14 C 1.50702 * 109.47354 * 180.02562 * 13 11 10 15 15 C 1.38303 * 119.92825 * 269.72656 * 14 13 11 16 16 C 1.38092 * 120.06969 * 179.72136 * 15 14 13 17 17 C 1.38878 * 119.92976 * 0.56719 * 16 15 14 18 18 O 1.35755 * 120.07407 * 179.67927 * 17 16 15 19 19 C 1.34828 * 117.00336 * 174.49020 * 18 17 16 20 20 H 1.07993 * 119.99801 * 5.05765 * 19 18 17 21 21 C 1.38649 * 119.99598 * 185.05883 * 19 18 17 22 22 N 1.31559 * 120.00446 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99730 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47021 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46936 * 120.00084 * 23 21 19 26 26 H 1.48497 * 109.47119 * 239.99961 * 23 21 19 27 27 C 1.38883 * 119.86178 * 359.70761 * 17 16 15 28 28 C 1.38097 * 119.92838 * 359.97438 * 27 17 16 29 29 H 1.09005 * 109.47536 * 300.00406 * 1 2 3 30 30 H 1.09006 * 109.47141 * 59.99666 * 1 2 3 31 31 H 1.08996 * 109.47536 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47044 * 239.99600 * 2 1 3 33 33 H 1.09002 * 109.46646 * 120.00323 * 2 1 3 34 34 H 1.09001 * 109.46802 * 60.00006 * 3 2 1 35 35 H 1.08998 * 109.46850 * 300.00328 * 3 2 1 36 36 H 0.97004 * 120.00299 * 359.97438 * 4 3 2 37 37 H 1.08998 * 109.46863 * 180.02562 * 9 7 5 38 38 H 1.09004 * 109.46779 * 299.99723 * 9 7 5 39 39 H 1.08998 * 109.47086 * 59.99544 * 9 7 5 40 40 H 0.97005 * 120.00236 * 335.00055 * 10 7 5 41 41 H 1.09008 * 109.47012 * 299.99799 * 13 11 10 42 42 H 1.08997 * 109.47715 * 59.99652 * 13 11 10 43 43 H 1.08001 * 119.96172 * 359.97438 * 15 14 13 44 44 H 1.08002 * 120.03623 * 180.26808 * 16 15 14 45 45 H 0.97002 * 119.99855 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.03191 * 179.97438 * 27 17 16 47 47 H 1.08005 * 119.96475 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1790 2.6095 0.0012 6 8 3.5726 3.6599 0.0008 7 6 5.6860 2.6095 0.0025 8 1 6.0486 2.0956 0.8926 9 6 6.1969 1.8883 -1.2465 10 7 6.1743 3.9906 0.0023 11 6 7.3960 4.2735 0.4965 12 8 8.0911 3.3846 0.9408 13 6 7.8981 5.6944 0.4969 14 6 9.2795 5.7388 1.0977 15 6 9.4342 5.9334 2.4582 16 6 10.6984 5.9689 3.0127 17 6 11.8155 5.8207 2.2010 18 8 13.0599 5.8617 2.7421 19 6 14.0945 5.5977 1.9187 20 1 13.9201 5.4476 0.8636 21 6 15.3821 5.5189 2.4268 22 7 15.5945 5.7023 3.7121 23 14 16.8154 5.1525 1.2862 24 1 16.3141 4.9893 -0.1020 25 1 17.7850 6.2763 1.3329 26 1 17.4866 3.9012 1.7210 27 6 11.6570 5.6312 0.8343 28 6 10.3898 5.5901 0.2868 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 3.9900 0.6023 0.0013 37 1 7.2869 1.8879 -1.2454 38 1 5.8335 0.8606 -1.2468 39 1 5.8343 2.4022 -2.1367 40 1 5.6185 4.7016 -0.3534 41 1 7.9355 6.0668 -0.5269 42 1 7.2251 6.3175 1.0858 43 1 8.5653 6.0536 3.0882 44 1 10.8185 6.1166 4.0758 45 1 16.4954 5.6468 4.0676 46 1 12.5238 5.5161 0.2004 47 1 10.2658 5.4423 -0.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647613009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:32 Heat of formation + Delta-G solvation = -115.766051 kcal Electronic energy + Delta-G solvation = -27328.605381 eV Core-core repulsion = 23282.557565 eV Total energy + Delta-G solvation = -4046.047816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51704 -40.83271 -40.11907 -38.22590 -36.91150 -35.96567 -34.39263 -33.80821 -32.99435 -31.77683 -31.35791 -28.17123 -27.39763 -26.99966 -25.02305 -23.62139 -22.68640 -22.52053 -21.35174 -21.22308 -19.83723 -18.99581 -18.67956 -17.86129 -17.17817 -16.87414 -16.61687 -16.54275 -16.28055 -15.97442 -15.73093 -15.53362 -15.50138 -15.02235 -14.93900 -14.57418 -14.38943 -14.17908 -13.91309 -13.77982 -13.58850 -13.37003 -13.32249 -12.97335 -12.93072 -12.82697 -12.59891 -12.47638 -12.27162 -12.23325 -12.09001 -12.03858 -11.75325 -11.16401 -11.04769 -10.93993 -10.74815 -10.23652 -10.13018 -9.75097 -8.89277 -8.46457 -6.14640 0.62812 0.67628 1.34735 1.43244 1.43322 1.53619 1.66723 1.85244 2.18322 2.41801 2.86176 3.18471 3.53310 3.54939 3.86160 3.91579 3.99841 4.05457 4.07297 4.11978 4.19517 4.23972 4.35108 4.49739 4.60171 4.63732 4.67074 4.72497 4.75027 4.79636 4.81695 4.86207 5.10074 5.16013 5.16367 5.17946 5.24785 5.28910 5.31789 5.37915 5.45076 5.57735 5.72785 5.79368 6.03992 6.23651 6.39338 6.55330 6.98200 7.06655 7.29406 7.79645 8.77246 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026541 B = 0.001748 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.734609 B =16013.941913 C =16328.396247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.117 3.883 4 N -0.713 5.713 5 C 0.516 3.484 6 O -0.570 6.570 7 C 0.124 3.876 8 H 0.106 0.894 9 C -0.153 4.153 10 N -0.711 5.711 11 C 0.518 3.482 12 O -0.571 6.571 13 C -0.078 4.078 14 C -0.145 4.145 15 C -0.058 4.058 16 C -0.206 4.206 17 C 0.112 3.888 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.024 4.024 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.266 1.266 26 H -0.269 1.269 27 C -0.243 4.243 28 C -0.058 4.058 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.417 0.583 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.416 0.584 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.144 0.856 44 H 0.111 0.889 45 H 0.272 0.728 46 H 0.118 0.882 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.651 -10.494 -13.310 34.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.365 5.365 5 C 0.301 3.699 6 O -0.449 6.449 7 C 0.015 3.985 8 H 0.124 0.876 9 C -0.211 4.211 10 N -0.366 5.366 11 C 0.306 3.694 12 O -0.449 6.449 13 C -0.118 4.118 14 C -0.146 4.146 15 C -0.076 4.076 16 C -0.225 4.225 17 C 0.062 3.938 18 O -0.141 6.141 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.221 4.221 22 N -0.560 5.560 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.191 1.191 26 H -0.194 1.194 27 C -0.262 4.262 28 C -0.076 4.076 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.162 0.838 44 H 0.130 0.870 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -29.391 -10.344 -12.628 33.619 hybrid contribution 1.016 -0.125 -0.001 1.024 sum -28.374 -10.469 -12.629 32.775 Atomic orbital electron populations 1.21695 0.94286 1.02740 1.02219 1.21700 0.97137 0.94045 1.03759 1.21502 0.78547 0.98839 1.01778 1.45882 1.07936 1.08512 1.74197 1.20674 0.89746 0.84129 0.75309 1.90696 1.70584 1.32526 1.51122 1.20792 0.89949 0.85338 1.02430 0.87609 1.22101 1.02126 1.01339 0.95555 1.45752 1.17651 1.09319 1.63870 1.21108 0.80566 0.91907 0.75854 1.90747 1.57179 1.49779 1.47160 1.20513 0.93269 0.92745 1.05224 1.19221 0.94531 1.07485 0.93358 1.20864 0.95286 0.96500 0.94982 1.20424 0.91318 1.11629 0.99156 1.19932 0.86175 0.94430 0.93240 1.83938 1.11850 1.79172 1.39185 1.21870 0.84866 1.50317 0.91918 0.88193 1.26612 1.00734 0.96218 0.98554 1.70200 1.23007 1.48521 1.14281 0.84511 0.75720 0.78407 0.77420 1.17498 1.19123 1.19380 1.21228 0.99025 1.11691 0.94263 1.20923 0.90748 0.95862 1.00041 0.92682 0.92367 0.91297 0.90042 0.90546 0.92554 0.91890 0.74560 0.92329 0.88553 0.91180 0.74553 0.85276 0.85567 0.83792 0.87044 0.91869 0.86407 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 71.98 0.71 -0.01 16 2 C -0.13 -0.59 6.05 30.59 0.19 -0.40 16 3 C 0.12 1.12 5.67 86.38 0.49 1.61 16 4 N -0.71 -7.15 5.45 -463.07 -2.52 -9.68 16 5 C 0.52 8.46 7.22 87.66 0.63 9.09 16 6 O -0.57 -13.25 15.84 -3.05 -0.05 -13.29 16 7 C 0.12 2.05 2.99 44.25 0.13 2.19 16 8 H 0.11 1.99 7.58 -2.39 -0.02 1.97 16 9 C -0.15 -1.97 9.38 71.98 0.68 -1.29 16 10 N -0.71 -13.42 4.95 -446.10 -2.21 -15.63 16 11 C 0.52 12.89 7.79 87.66 0.68 13.57 16 12 O -0.57 -19.80 15.70 -3.02 -0.05 -19.85 16 13 C -0.08 -1.68 5.83 29.10 0.17 -1.51 16 14 C -0.14 -4.74 4.38 -19.83 -0.09 -4.82 16 15 C -0.06 -2.11 9.69 22.25 0.22 -1.90 16 16 C -0.21 -9.43 9.99 22.39 0.22 -9.21 16 17 C 0.11 5.94 6.65 22.58 0.15 6.09 16 18 O -0.23 -14.80 9.76 -22.78 -0.22 -15.02 16 19 C -0.41 -25.05 9.49 67.92 0.64 -24.41 16 20 H 0.10 5.59 5.20 -2.91 -0.02 5.57 16 21 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 22 N -0.92 -58.15 13.67 21.61 0.30 -57.86 16 23 Si 1.02 44.16 29.55 68.60 2.03 46.18 16 24 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 C -0.24 -11.24 9.17 22.39 0.21 -11.03 16 28 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 29 H 0.05 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 31 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 32 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.42 1.89 7.89 -92.70 -0.73 1.16 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 0.67 7.57 -2.38 -0.02 0.65 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.42 6.63 7.79 -92.70 -0.72 5.91 16 41 H 0.13 1.97 8.08 -2.38 -0.02 1.96 16 42 H 0.13 2.03 8.08 -2.39 -0.02 2.01 16 43 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 45 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 46 H 0.12 5.52 5.64 -2.91 -0.02 5.50 16 47 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -85.35 399.22 2.53 -82.82 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.46 Total: 27.19 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: 5.72 Total: -24.86 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -4.44 Total: -83.16 kcal Atomic # 8 Polarization: -47.85 SS G_CDS: -0.32 Total: -48.17 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -85.35 2.53 -82.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647613009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.946 kcal (2) G-P(sol) polarization free energy of solvation -85.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds